data_6MDD # _model_server_result.job_id MV5BTpfL_VvSvcvweg3knw _model_server_result.datetime_utc '2024-11-04 22:26:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6MDD # _exptl.entry_id 6MDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.96 _cell.angle_gamma 90 _cell.entry_id 6MDD _cell.length_a 46.419 _cell.length_b 214.8 _cell.length_c 56.092 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 289 n n P O2 PO4 sing 290 n n P O3 PO4 sing 291 n n P O4 PO4 sing 292 n n # _atom_sites.entry_id 6MDD _atom_sites.fract_transf_matrix[1][1] 0.021543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JE7 A 1 601 1 JE7 LI1 . D 3 PO4 A 1 602 1 PO4 PO4 . E 2 JE7 B 1 601 2 JE7 LI1 . F 3 PO4 B 1 602 2 PO4 PO4 . G 4 HOH A 1 701 18 HOH HOH . G 4 HOH A 2 702 155 HOH HOH . G 4 HOH A 3 703 163 HOH HOH . G 4 HOH A 4 704 59 HOH HOH . G 4 HOH A 5 705 243 HOH HOH . G 4 HOH A 6 706 97 HOH HOH . G 4 HOH A 7 707 211 HOH HOH . G 4 HOH A 8 708 47 HOH HOH . G 4 HOH A 9 709 185 HOH HOH . G 4 HOH A 10 710 103 HOH HOH . G 4 HOH A 11 711 15 HOH HOH . G 4 HOH A 12 712 206 HOH HOH . G 4 HOH A 13 713 99 HOH HOH . G 4 HOH A 14 714 164 HOH HOH . G 4 HOH A 15 715 219 HOH HOH . G 4 HOH A 16 716 137 HOH HOH . G 4 HOH A 17 717 62 HOH HOH . G 4 HOH A 18 718 48 HOH HOH . G 4 HOH A 19 719 55 HOH HOH . G 4 HOH A 20 720 170 HOH HOH . G 4 HOH A 21 721 199 HOH HOH . G 4 HOH A 22 722 66 HOH HOH . G 4 HOH A 23 723 115 HOH HOH . G 4 HOH A 24 724 54 HOH HOH . G 4 HOH A 25 725 95 HOH HOH . G 4 HOH A 26 726 22 HOH HOH . G 4 HOH A 27 727 4 HOH HOH . G 4 HOH A 28 728 195 HOH HOH . G 4 HOH A 29 729 126 HOH HOH . G 4 HOH A 30 730 174 HOH HOH . G 4 HOH A 31 731 133 HOH HOH . G 4 HOH A 32 732 108 HOH HOH . G 4 HOH A 33 733 139 HOH HOH . G 4 HOH A 34 734 45 HOH HOH . G 4 HOH A 35 735 42 HOH HOH . G 4 HOH A 36 736 217 HOH HOH . G 4 HOH A 37 737 102 HOH HOH . G 4 HOH A 38 738 52 HOH HOH . G 4 HOH A 39 739 160 HOH HOH . G 4 HOH A 40 740 114 HOH HOH . G 4 HOH A 41 741 180 HOH HOH . G 4 HOH A 42 742 162 HOH HOH . G 4 HOH A 43 743 161 HOH HOH . G 4 HOH A 44 744 215 HOH HOH . G 4 HOH A 45 745 34 HOH HOH . G 4 HOH A 46 746 130 HOH HOH . G 4 HOH A 47 747 77 HOH HOH . G 4 HOH A 48 748 178 HOH HOH . G 4 HOH A 49 749 240 HOH HOH . G 4 HOH A 50 750 24 HOH HOH . G 4 HOH A 51 751 40 HOH HOH . G 4 HOH A 52 752 190 HOH HOH . G 4 HOH A 53 753 224 HOH HOH . G 4 HOH A 54 754 36 HOH HOH . G 4 HOH A 55 755 32 HOH HOH . G 4 HOH A 56 756 41 HOH HOH . G 4 HOH A 57 757 232 HOH HOH . G 4 HOH A 58 758 110 HOH HOH . G 4 HOH A 59 759 29 HOH HOH . G 4 HOH A 60 760 7 HOH HOH . G 4 HOH A 61 761 169 HOH HOH . G 4 HOH A 62 762 20 HOH HOH . G 4 HOH A 63 763 80 HOH HOH . G 4 HOH A 64 764 70 HOH HOH . G 4 HOH A 65 765 27 HOH HOH . G 4 HOH A 66 766 16 HOH HOH . G 4 HOH A 67 767 117 HOH HOH . G 4 HOH A 68 768 35 HOH HOH . G 4 HOH A 69 769 109 HOH HOH . G 4 HOH A 70 770 239 HOH HOH . G 4 HOH A 71 771 127 HOH HOH . G 4 HOH A 72 772 154 HOH HOH . G 4 HOH A 73 773 221 HOH HOH . G 4 HOH A 74 774 85 HOH HOH . G 4 HOH A 75 775 49 HOH HOH . G 4 HOH A 76 776 231 HOH HOH . G 4 HOH A 77 777 64 HOH HOH . G 4 HOH A 78 778 210 HOH HOH . G 4 HOH A 79 779 13 HOH HOH . G 4 HOH A 80 780 5 HOH HOH . G 4 HOH A 81 781 247 HOH HOH . G 4 HOH A 82 782 43 HOH HOH . G 4 HOH A 83 783 216 HOH HOH . G 4 HOH A 84 784 21 HOH HOH . G 4 HOH A 85 785 105 HOH HOH . G 4 HOH A 86 786 2 HOH HOH . G 4 HOH A 87 787 140 HOH HOH . G 4 HOH A 88 788 11 HOH HOH . G 4 HOH A 89 789 148 HOH HOH . G 4 HOH A 90 790 208 HOH HOH . G 4 HOH A 91 791 86 HOH HOH . G 4 HOH A 92 792 230 HOH HOH . G 4 HOH A 93 793 176 HOH HOH . G 4 HOH A 94 794 71 HOH HOH . G 4 HOH A 95 795 50 HOH HOH . G 4 HOH A 96 796 244 HOH HOH . G 4 HOH A 97 797 150 HOH HOH . G 4 HOH A 98 798 67 HOH HOH . G 4 HOH A 99 799 135 HOH HOH . G 4 HOH A 100 800 8 HOH HOH . G 4 HOH A 101 801 98 HOH HOH . G 4 HOH A 102 802 92 HOH HOH . G 4 HOH A 103 803 63 HOH HOH . G 4 HOH A 104 804 249 HOH HOH . G 4 HOH A 105 805 238 HOH HOH . G 4 HOH A 106 806 37 HOH HOH . G 4 HOH A 107 807 198 HOH HOH . G 4 HOH A 108 808 51 HOH HOH . G 4 HOH A 109 809 132 HOH HOH . G 4 HOH A 110 810 141 HOH HOH . G 4 HOH A 111 811 207 HOH HOH . G 4 HOH A 112 812 91 HOH HOH . G 4 HOH A 113 813 6 HOH HOH . G 4 HOH A 114 814 118 HOH HOH . G 4 HOH A 115 815 56 HOH HOH . G 4 HOH A 116 816 17 HOH HOH . G 4 HOH A 117 817 10 HOH HOH . G 4 HOH A 118 818 229 HOH HOH . G 4 HOH A 119 819 248 HOH HOH . G 4 HOH A 120 820 237 HOH HOH . G 4 HOH A 121 821 136 HOH HOH . G 4 HOH A 122 822 120 HOH HOH . G 4 HOH A 123 823 194 HOH HOH . G 4 HOH A 124 824 245 HOH HOH . G 4 HOH A 125 825 72 HOH HOH . G 4 HOH A 126 826 196 HOH HOH . G 4 HOH A 127 827 94 HOH HOH . G 4 HOH A 128 828 228 HOH HOH . G 4 HOH A 129 829 212 HOH HOH . G 4 HOH A 130 830 246 HOH HOH . G 4 HOH A 131 831 151 HOH HOH . H 4 HOH B 1 701 122 HOH HOH . H 4 HOH B 2 702 171 HOH HOH . H 4 HOH B 3 703 19 HOH HOH . H 4 HOH B 4 704 14 HOH HOH . H 4 HOH B 5 705 172 HOH HOH . H 4 HOH B 6 706 25 HOH HOH . H 4 HOH B 7 707 156 HOH HOH . H 4 HOH B 8 708 39 HOH HOH . H 4 HOH B 9 709 75 HOH HOH . H 4 HOH B 10 710 193 HOH HOH . H 4 HOH B 11 711 181 HOH HOH . H 4 HOH B 12 712 79 HOH HOH . H 4 HOH B 13 713 131 HOH HOH . H 4 HOH B 14 714 179 HOH HOH . H 4 HOH B 15 715 166 HOH HOH . H 4 HOH B 16 716 142 HOH HOH . H 4 HOH B 17 717 251 HOH HOH . H 4 HOH B 18 718 121 HOH HOH . H 4 HOH B 19 719 30 HOH HOH . H 4 HOH B 20 720 61 HOH HOH . H 4 HOH B 21 721 146 HOH HOH . H 4 HOH B 22 722 149 HOH HOH . H 4 HOH B 23 723 165 HOH HOH . H 4 HOH B 24 724 235 HOH HOH . H 4 HOH B 25 725 218 HOH HOH . H 4 HOH B 26 726 186 HOH HOH . H 4 HOH B 27 727 33 HOH HOH . H 4 HOH B 28 728 144 HOH HOH . H 4 HOH B 29 729 113 HOH HOH . H 4 HOH B 30 730 1 HOH HOH . H 4 HOH B 31 731 123 HOH HOH . H 4 HOH B 32 732 204 HOH HOH . H 4 HOH B 33 733 168 HOH HOH . H 4 HOH B 34 734 167 HOH HOH . H 4 HOH B 35 735 26 HOH HOH . H 4 HOH B 36 736 12 HOH HOH . H 4 HOH B 37 737 81 HOH HOH . H 4 HOH B 38 738 46 HOH HOH . H 4 HOH B 39 739 128 HOH HOH . H 4 HOH B 40 740 53 HOH HOH . H 4 HOH B 41 741 60 HOH HOH . H 4 HOH B 42 742 189 HOH HOH . H 4 HOH B 43 743 209 HOH HOH . H 4 HOH B 44 744 184 HOH HOH . H 4 HOH B 45 745 101 HOH HOH . H 4 HOH B 46 746 96 HOH HOH . H 4 HOH B 47 747 3 HOH HOH . H 4 HOH B 48 748 233 HOH HOH . H 4 HOH B 49 749 38 HOH HOH . H 4 HOH B 50 750 227 HOH HOH . H 4 HOH B 51 751 44 HOH HOH . H 4 HOH B 52 752 177 HOH HOH . H 4 HOH B 53 753 252 HOH HOH . H 4 HOH B 54 754 82 HOH HOH . H 4 HOH B 55 755 89 HOH HOH . H 4 HOH B 56 756 214 HOH HOH . H 4 HOH B 57 757 203 HOH HOH . H 4 HOH B 58 758 23 HOH HOH . H 4 HOH B 59 759 213 HOH HOH . H 4 HOH B 60 760 183 HOH HOH . H 4 HOH B 61 761 106 HOH HOH . H 4 HOH B 62 762 191 HOH HOH . H 4 HOH B 63 763 187 HOH HOH . H 4 HOH B 64 764 182 HOH HOH . H 4 HOH B 65 765 201 HOH HOH . H 4 HOH B 66 766 134 HOH HOH . H 4 HOH B 67 767 76 HOH HOH . H 4 HOH B 68 768 129 HOH HOH . H 4 HOH B 69 769 202 HOH HOH . H 4 HOH B 70 770 158 HOH HOH . H 4 HOH B 71 771 58 HOH HOH . H 4 HOH B 72 772 57 HOH HOH . H 4 HOH B 73 773 124 HOH HOH . H 4 HOH B 74 774 173 HOH HOH . H 4 HOH B 75 775 119 HOH HOH . H 4 HOH B 76 776 68 HOH HOH . H 4 HOH B 77 777 28 HOH HOH . H 4 HOH B 78 778 234 HOH HOH . H 4 HOH B 79 779 107 HOH HOH . H 4 HOH B 80 780 83 HOH HOH . H 4 HOH B 81 781 197 HOH HOH . H 4 HOH B 82 782 205 HOH HOH . H 4 HOH B 83 783 226 HOH HOH . H 4 HOH B 84 784 138 HOH HOH . H 4 HOH B 85 785 87 HOH HOH . H 4 HOH B 86 786 112 HOH HOH . H 4 HOH B 87 787 78 HOH HOH . H 4 HOH B 88 788 88 HOH HOH . H 4 HOH B 89 789 111 HOH HOH . H 4 HOH B 90 790 90 HOH HOH . H 4 HOH B 91 791 188 HOH HOH . H 4 HOH B 92 792 104 HOH HOH . H 4 HOH B 93 793 84 HOH HOH . H 4 HOH B 94 794 159 HOH HOH . H 4 HOH B 95 795 200 HOH HOH . H 4 HOH B 96 796 9 HOH HOH . H 4 HOH B 97 797 31 HOH HOH . H 4 HOH B 98 798 143 HOH HOH . H 4 HOH B 99 799 157 HOH HOH . H 4 HOH B 100 800 225 HOH HOH . H 4 HOH B 101 801 147 HOH HOH . H 4 HOH B 102 802 65 HOH HOH . H 4 HOH B 103 803 145 HOH HOH . H 4 HOH B 104 804 93 HOH HOH . H 4 HOH B 105 805 69 HOH HOH . H 4 HOH B 106 806 116 HOH HOH . H 4 HOH B 107 807 100 HOH HOH . H 4 HOH B 108 808 74 HOH HOH . H 4 HOH B 109 809 223 HOH HOH . H 4 HOH B 110 810 125 HOH HOH . H 4 HOH B 111 811 241 HOH HOH . H 4 HOH B 112 812 175 HOH HOH . H 4 HOH B 113 813 73 HOH HOH . H 4 HOH B 114 814 152 HOH HOH . H 4 HOH B 115 815 242 HOH HOH . H 4 HOH B 116 816 222 HOH HOH . H 4 HOH B 117 817 153 HOH HOH . H 4 HOH B 118 818 236 HOH HOH . H 4 HOH B 119 819 192 HOH HOH . H 4 HOH B 120 820 250 HOH HOH . H 4 HOH B 121 821 220 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 3 -1.253 -17.957 38.895 1 42.37 ? P PO4 602 B 1 HETATM 2 O O1 PO4 . . . F 3 -0.888 -18.973 37.718 1 42.51 ? O1 PO4 602 B 1 HETATM 3 O O2 PO4 . . . F 3 -2.834 -17.718 38.906 1 46.73 ? O2 PO4 602 B 1 HETATM 4 O O3 PO4 . . . F 3 -0.52 -16.652 38.584 1 45.07 ? O3 PO4 602 B 1 HETATM 5 O O4 PO4 . . . F 3 -0.818 -18.496 40.336 1 41.56 ? O4 PO4 602 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #