data_6MDN
#
_model_server_result.job_id            vxU1_sgazqQ75lSp-jEVmA 
_model_server_result.datetime_utc      '2024-12-26 21:11:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":801}' 
#
_entry.id    6MDN 
#
_exptl.entry_id    6MDN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MDN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 N N N 
? 6 O N N 
? 6 P N N 
? 6 Q N N 
? 6 R N N 
? 6 S N N 
? 6 T N N 
? 6 V N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     6MDN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 6 ATP A 1 801 9 ATP ATP . 
M 7 ADP A 1 802 11 ADP ADP . 
N 6 ATP B 1 801 1 ATP ATP . 
O 6 ATP B 1 802 3 ATP ATP . 
P 6 ATP C 1 801 2 ATP ATP . 
Q 6 ATP C 1 802 4 ATP ATP . 
R 6 ATP D 1 801 5 ATP ATP . 
S 6 ATP D 1 802 6 ATP ATP . 
T 6 ATP E 1 801 7 ATP ATP . 
U 7 ADP E 1 802 10 ADP ADP . 
V 6 ATP F 1 801 8 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . P 6 132.489 178.868 203.847 1 59.21 ? PG ATP 801 C 1 
HETATM 2 O O1G ATP . . . P 6 132.054 177.44 203.718 1 59.21 ? O1G ATP 801 C 1 
HETATM 3 O O2G ATP . . . P 6 131.791 179.671 204.912 1 59.21 ? O2G ATP 801 C 1 
HETATM 4 O O3G ATP . . . P 6 133.967 179.09 203.737 1 59.21 ? O3G ATP 801 C 1 
HETATM 5 P PB ATP . . . P 6 132.649 180.942 202.244 1 59.21 ? PB ATP 801 C 1 
HETATM 6 O O1B ATP . . . P 6 134.039 180.742 201.721 1 59.21 ? O1B ATP 801 C 1 
HETATM 7 O O2B ATP . . . P 6 132.388 181.782 203.462 1 59.21 ? O2B ATP 801 C 1 
HETATM 8 O O3B ATP . . . P 6 131.999 179.523 202.494 1 59.21 ? O3B ATP 801 C 1 
HETATM 9 P PA ATP . . . P 6 132.282 182.834 200.44 1 59.21 ? PA ATP 801 C 1 
HETATM 10 O O1A ATP . . . P 6 132.649 182.656 198.995 1 59.21 ? O1A ATP 801 C 1 
HETATM 11 O O2A ATP . . . P 6 133.258 183.246 201.507 1 59.21 ? O2A ATP 801 C 1 
HETATM 12 O O3A ATP . . . P 6 131.752 181.464 201.04 1 59.21 ? O3A ATP 801 C 1 
HETATM 13 O O5' ATP . . . P 6 130.919 183.64 200.616 1 59.21 ? O5' ATP 801 C 1 
HETATM 14 C C5' ATP . . . P 6 131.125 184.985 200.962 1 59.21 ? C5' ATP 801 C 1 
HETATM 15 C C4' ATP . . . P 6 129.904 185.86 200.881 1 59.21 ? C4' ATP 801 C 1 
HETATM 16 O O4' ATP . . . P 6 130.09 186.932 201.784 1 59.21 ? O4' ATP 801 C 1 
HETATM 17 C C3' ATP . . . P 6 129.649 186.447 199.515 1 59.21 ? C3' ATP 801 C 1 
HETATM 18 O O3' ATP . . . P 6 128.528 185.875 198.854 1 59.21 ? O3' ATP 801 C 1 
HETATM 19 C C2' ATP . . . P 6 129.376 187.9 199.765 1 59.21 ? C2' ATP 801 C 1 
HETATM 20 O O2' ATP . . . P 6 128.111 188.255 199.231 1 59.21 ? O2' ATP 801 C 1 
HETATM 21 C C1' ATP . . . P 6 129.376 188.029 201.26 1 59.21 ? C1' ATP 801 C 1 
HETATM 22 N N9 ATP . . . P 6 130.01 189.301 201.537 1 59.21 ? N9 ATP 801 C 1 
HETATM 23 C C8 ATP . . . P 6 129.517 190.454 201.138 1 59.21 ? C8 ATP 801 C 1 
HETATM 24 N N7 ATP . . . P 6 130.293 191.459 201.553 1 59.21 ? N7 ATP 801 C 1 
HETATM 25 C C5 ATP . . . P 6 131.285 190.919 202.247 1 59.21 ? C5 ATP 801 C 1 
HETATM 26 C C6 ATP . . . P 6 132.463 191.387 202.95 1 59.21 ? C6 ATP 801 C 1 
HETATM 27 N N6 ATP . . . P 6 132.683 192.694 202.987 1 59.21 ? N6 ATP 801 C 1 
HETATM 28 N N1 ATP . . . P 6 133.265 190.524 203.576 1 59.21 ? N1 ATP 801 C 1 
HETATM 29 C C2 ATP . . . P 6 133.011 189.219 203.532 1 59.21 ? C2 ATP 801 C 1 
HETATM 30 N N3 ATP . . . P 6 131.956 188.707 202.89 1 59.21 ? N3 ATP 801 C 1 
HETATM 31 C C4 ATP . . . P 6 131.094 189.497 202.237 1 59.21 ? C4 ATP 801 C 1 
HETATM 32 H "H5'1" ATP . . . P 6 131.98 185.409 200.441 1 59.21 ? "H5'1" ATP 801 C 1 
HETATM 33 H "H5'2" ATP . . . P 6 131.367 184.934 202.005 1 59.21 ? "H5'2" ATP 801 C 1 
HETATM 34 H H4' ATP . . . P 6 129.02 185.291 201.169 1 59.21 ? H4' ATP 801 C 1 
HETATM 35 H H3' ATP . . . P 6 130.56 186.366 198.914 1 59.21 ? H3' ATP 801 C 1 
HETATM 36 H HO3' ATP . . . P 6 128.509 186.207 197.945 1 59.21 ? HO3' ATP 801 C 1 
HETATM 37 H H2' ATP . . . P 6 130.185 188.495 199.337 1 59.21 ? H2' ATP 801 C 1 
HETATM 38 H HO2' ATP . . . P 6 128.257 188.517 198.317 1 59.21 ? HO2' ATP 801 C 1 
HETATM 39 H H1' ATP . . . P 6 128.344 188.044 201.613 1 59.21 ? H1' ATP 801 C 1 
HETATM 40 H H8 ATP . . . P 6 128.636 190.543 200.531 1 59.21 ? H8 ATP 801 C 1 
HETATM 41 H HN61 ATP . . . P 6 132.043 193.287 202.507 1 59.21 ? HN61 ATP 801 C 1 
HETATM 42 H HN62 ATP . . . P 6 133.479 193.063 203.477 1 59.21 ? HN62 ATP 801 C 1 
HETATM 43 H H2 ATP . . . P 6 133.682 188.549 204.041 1 59.21 ? H2 ATP 801 C 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    83 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#