data_6MDN
#
_model_server_result.job_id            g-bIipaIaaGn_EMaCqCvOA 
_model_server_result.datetime_utc      '2024-12-26 21:37:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mdn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":802}' 
#
_entry.id    6MDN 
#
_exptl.entry_id    6MDN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MDN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MDN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 M N N 
? 7 U N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6MDN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 6 ATP A 1 801 9 ATP ATP . 
M 7 ADP A 1 802 11 ADP ADP . 
N 6 ATP B 1 801 1 ATP ATP . 
O 6 ATP B 1 802 3 ATP ATP . 
P 6 ATP C 1 801 2 ATP ATP . 
Q 6 ATP C 1 802 4 ATP ATP . 
R 6 ATP D 1 801 5 ATP ATP . 
S 6 ATP D 1 802 6 ATP ATP . 
T 6 ATP E 1 801 7 ATP ATP . 
U 7 ADP E 1 802 10 ADP ADP . 
V 6 ATP F 1 801 8 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . M 7 114.039 137.595 172.913 1 75.46 ? PB ADP 802 A 1 
HETATM 2 O O1B ADP . . . M 7 114.462 138.784 172.097 1 75.46 ? O1B ADP 802 A 1 
HETATM 3 O O2B ADP . . . M 7 112.559 137.45 173.08 1 75.46 ? O2B ADP 802 A 1 
HETATM 4 O O3B ADP . . . M 7 114.859 137.343 174.149 1 75.46 ? O3B ADP 802 A 1 
HETATM 5 P PA ADP . . . M 7 113.424 136.235 170.697 1 75.46 ? PA ADP 802 A 1 
HETATM 6 O O1A ADP . . . M 7 114.214 135.657 169.554 1 75.46 ? O1A ADP 802 A 1 
HETATM 7 O O2A ADP . . . M 7 112.671 137.518 170.503 1 75.46 ? O2A ADP 802 A 1 
HETATM 8 O O3A ADP . . . M 7 114.354 136.343 171.986 1 75.46 ? O3A ADP 802 A 1 
HETATM 9 O O5' ADP . . . M 7 112.347 135.154 171.136 1 75.46 ? O5' ADP 802 A 1 
HETATM 10 C C5' ADP . . . M 7 111.006 135.564 171.285 1 75.46 ? C5' ADP 802 A 1 
HETATM 11 C C4' ADP . . . M 7 110.214 134.285 171.361 1 75.46 ? C4' ADP 802 A 1 
HETATM 12 O O4' ADP . . . M 7 108.848 134.516 171.705 1 75.46 ? O4' ADP 802 A 1 
HETATM 13 C C3' ADP . . . M 7 110.223 133.615 170.026 1 75.46 ? C3' ADP 802 A 1 
HETATM 14 O O3' ADP . . . M 7 111.187 132.567 170.025 1 75.46 ? O3' ADP 802 A 1 
HETATM 15 C C2' ADP . . . M 7 108.828 133.106 169.915 1 75.46 ? C2' ADP 802 A 1 
HETATM 16 O O2' ADP . . . M 7 108.879 131.715 169.665 1 75.46 ? O2' ADP 802 A 1 
HETATM 17 C C1' ADP . . . M 7 108.102 133.419 171.206 1 75.46 ? C1' ADP 802 A 1 
HETATM 18 N N9 ADP . . . M 7 106.692 133.802 171.04 1 75.46 ? N9 ADP 802 A 1 
HETATM 19 C C8 ADP . . . M 7 105.879 133.604 170.004 1 75.46 ? C8 ADP 802 A 1 
HETATM 20 N N7 ADP . . . M 7 104.668 134.159 170.213 1 75.46 ? N7 ADP 802 A 1 
HETATM 21 C C5 ADP . . . M 7 104.699 134.722 171.419 1 75.46 ? C5 ADP 802 A 1 
HETATM 22 C C6 ADP . . . M 7 103.765 135.465 172.271 1 75.46 ? C6 ADP 802 A 1 
HETATM 23 N N6 ADP . . . M 7 102.515 135.739 171.88 1 75.46 ? N6 ADP 802 A 1 
HETATM 24 N N1 ADP . . . M 7 104.201 135.876 173.463 1 75.46 ? N1 ADP 802 A 1 
HETATM 25 C C2 ADP . . . M 7 105.447 135.62 173.875 1 75.46 ? C2 ADP 802 A 1 
HETATM 26 N N3 ADP . . . M 7 106.346 134.945 173.153 1 75.46 ? N3 ADP 802 A 1 
HETATM 27 C C4 ADP . . . M 7 106.038 134.494 171.936 1 75.46 ? C4 ADP 802 A 1 
HETATM 28 H "H5'1" ADP . . . M 7 110.687 136.173 170.445 1 75.46 ? "H5'1" ADP 802 A 1 
HETATM 29 H "H5'2" ADP . . . M 7 110.846 136.138 172.189 1 75.46 ? "H5'2" ADP 802 A 1 
HETATM 30 H H4' ADP . . . M 7 110.694 133.589 172.035 1 75.46 ? H4' ADP 802 A 1 
HETATM 31 H H3' ADP . . . M 7 110.411 134.316 169.21 1 75.46 ? H3' ADP 802 A 1 
HETATM 32 H HO3' ADP . . . M 7 111.263 132.207 169.135 1 75.46 ? HO3' ADP 802 A 1 
HETATM 33 H H2' ADP . . . M 7 108.424 133.651 169.092 1 75.46 ? H2' ADP 802 A 1 
HETATM 34 H HO2' ADP . . . M 7 109.101 131.607 168.735 1 75.46 ? HO2' ADP 802 A 1 
HETATM 35 H H1' ADP . . . M 7 108.165 132.573 171.871 1 75.46 ? H1' ADP 802 A 1 
HETATM 36 H H8 ADP . . . M 7 106.169 133.09 169.105 1 75.46 ? H8 ADP 802 A 1 
HETATM 37 H HN61 ADP . . . M 7 102.2 135.424 170.988 1 75.46 ? HN61 ADP 802 A 1 
HETATM 38 H HN62 ADP . . . M 7 101.9 136.25 172.485 1 75.46 ? HN62 ADP 802 A 1 
HETATM 39 H H2 ADP . . . M 7 105.75 135.976 174.849 1 75.46 ? H2 ADP 802 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    67 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#