data_6MDO
#
_model_server_result.job_id            gu5nmeZjR4Dp7mPNYH0cuA 
_model_server_result.datetime_utc      '2024-12-26 14:43:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":802}' 
#
_entry.id    6MDO 
#
_exptl.entry_id    6MDO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MDO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 Q N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6MDO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ATP A 1 801 9 ATP ATP . 
I 4 ADP A 1 802 12 ADP ADP . 
J 3 ATP B 1 801 1 ATP ATP . 
K 3 ATP B 1 802 3 ATP ATP . 
L 3 ATP C 1 801 2 ATP ATP . 
M 3 ATP C 1 802 4 ATP ATP . 
N 3 ATP D 1 801 5 ATP ATP . 
O 3 ATP D 1 802 6 ATP ATP . 
P 3 ATP E 1 801 7 ATP ATP . 
Q 4 ADP E 1 802 11 ADP ADP . 
R 3 ATP F 1 801 8 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . I 4 115.246 138.721 172.988 1 65.29 ? PB ADP 802 A 1 
HETATM 2 O O1B ADP . . . I 4 115.677 139.805 172.042 1 65.29 ? O1B ADP 802 A 1 
HETATM 3 O O2B ADP . . . I 4 113.754 138.591 173.157 1 65.29 ? O2B ADP 802 A 1 
HETATM 4 O O3B ADP . . . I 4 116.063 138.643 174.249 1 65.29 ? O3B ADP 802 A 1 
HETATM 5 P PA ADP . . . I 4 114.814 137.018 170.936 1 65.29 ? PA ADP 802 A 1 
HETATM 6 O O1A ADP . . . I 4 115.731 136.379 169.923 1 65.29 ? O1A ADP 802 A 1 
HETATM 7 O O2A ADP . . . I 4 114.035 138.248 170.569 1 65.29 ? O2A ADP 802 A 1 
HETATM 8 O O3A ADP . . . I 4 115.656 137.371 172.244 1 65.29 ? O3A ADP 802 A 1 
HETATM 9 O O5' ADP . . . I 4 113.77 135.903 171.396 1 65.29 ? O5' ADP 802 A 1 
HETATM 10 C C5' ADP . . . I 4 112.39 136.215 171.424 1 65.29 ? C5' ADP 802 A 1 
HETATM 11 C C4' ADP . . . I 4 111.683 134.881 171.569 1 65.29 ? C4' ADP 802 A 1 
HETATM 12 O O4' ADP . . . I 4 110.283 135.033 171.799 1 65.29 ? O4' ADP 802 A 1 
HETATM 13 C C3' ADP . . . I 4 111.796 134.056 170.307 1 65.29 ? C3' ADP 802 A 1 
HETATM 14 O O3' ADP . . . I 4 112.836 133.086 170.424 1 65.29 ? O3' ADP 802 A 1 
HETATM 15 C C2' ADP . . . I 4 110.445 133.41 170.147 1 65.29 ? C2' ADP 802 A 1 
HETATM 16 O O2' ADP . . . I 4 110.552 131.993 170.064 1 65.29 ? O2' ADP 802 A 1 
HETATM 17 C C1' ADP . . . I 4 109.645 133.833 171.367 1 65.29 ? C1' ADP 802 A 1 
HETATM 18 N N9 ADP . . . I 4 108.217 134.095 171.116 1 65.29 ? N9 ADP 802 A 1 
HETATM 19 C C8 ADP . . . I 4 107.464 133.61 170.121 1 65.29 ? C8 ADP 802 A 1 
HETATM 20 N N7 ADP . . . I 4 106.195 134.063 170.211 1 65.29 ? N7 ADP 802 A 1 
HETATM 21 C C5 ADP . . . I 4 106.135 134.837 171.296 1 65.29 ? C5 ADP 802 A 1 
HETATM 22 C C6 ADP . . . I 4 105.102 135.622 171.963 1 65.29 ? C6 ADP 802 A 1 
HETATM 23 N N6 ADP . . . I 4 103.859 135.654 171.482 1 65.29 ? N6 ADP 802 A 1 
HETATM 24 N N1 ADP . . . I 4 105.42 136.294 173.074 1 65.29 ? N1 ADP 802 A 1 
HETATM 25 C C2 ADP . . . I 4 106.659 136.264 173.57 1 65.29 ? C2 ADP 802 A 1 
HETATM 26 N N3 ADP . . . I 4 107.658 135.569 173.006 1 65.29 ? N3 ADP 802 A 1 
HETATM 27 C C4 ADP . . . I 4 107.463 134.859 171.883 1 65.29 ? C4 ADP 802 A 1 
HETATM 28 H "H5'1" ADP . . . I 4 112.094 136.715 170.506 1 65.29 ? "H5'1" ADP 802 A 1 
HETATM 29 H "H5'2" ADP . . . I 4 112.181 136.873 172.266 1 65.29 ? "H5'2" ADP 802 A 1 
HETATM 30 H H4' ADP . . . I 4 112.137 134.315 172.386 1 65.29 ? H4' ADP 802 A 1 
HETATM 31 H H3' ADP . . . I 4 111.977 134.712 169.452 1 65.29 ? H3' ADP 802 A 1 
HETATM 32 H HO3' ADP . . . I 4 112.953 132.645 169.574 1 65.29 ? HO3' ADP 802 A 1 
HETATM 33 H H2' ADP . . . I 4 110.026 133.795 169.228 1 65.29 ? H2' ADP 802 A 1 
HETATM 34 H HO2' ADP . . . I 4 110.849 131.761 169.174 1 65.29 ? HO2' ADP 802 A 1 
HETATM 35 H H1' ADP . . . I 4 109.72 133.057 172.124 1 65.29 ? H1' ADP 802 A 1 
HETATM 36 H H8 ADP . . . I 4 107.833 132.961 169.341 1 65.29 ? H8 ADP 802 A 1 
HETATM 37 H HN61 ADP . . . I 4 103.624 135.142 170.648 1 65.29 ? HN61 ADP 802 A 1 
HETATM 38 H HN62 ADP . . . I 4 103.176 136.187 171.979 1 65.29 ? HN62 ADP 802 A 1 
HETATM 39 H H2 ADP . . . I 4 106.867 136.834 174.464 1 65.29 ? H2 ADP 802 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           39 
#