data_6MDO
#
_model_server_result.job_id            3YGK0IThcORlyPngdx7zKQ 
_model_server_result.datetime_utc      '2024-12-26 14:03:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mdo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":802}' 
#
_entry.id    6MDO 
#
_exptl.entry_id    6MDO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MDO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 R N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     6MDO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ATP A 1 801 9 ATP ATP . 
I 4 ADP A 1 802 12 ADP ADP . 
J 3 ATP B 1 801 1 ATP ATP . 
K 3 ATP B 1 802 3 ATP ATP . 
L 3 ATP C 1 801 2 ATP ATP . 
M 3 ATP C 1 802 4 ATP ATP . 
N 3 ATP D 1 801 5 ATP ATP . 
O 3 ATP D 1 802 6 ATP ATP . 
P 3 ATP E 1 801 7 ATP ATP . 
Q 4 ADP E 1 802 11 ADP ADP . 
R 3 ATP F 1 801 8 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . K 3 114.076 156.057 207.262 1 43.67 ? PG ATP 802 B 1 
HETATM 2 O O1G ATP . . . K 3 114.302 155.974 205.777 1 43.67 ? O1G ATP 802 B 1 
HETATM 3 O O2G ATP . . . K 3 114.496 154.836 208.04 1 43.67 ? O2G ATP 802 B 1 
HETATM 4 O O3G ATP . . . K 3 114.441 157.375 207.89 1 43.67 ? O3G ATP 802 B 1 
HETATM 5 P PB ATP . . . K 3 111.764 157.346 206.803 1 43.67 ? PB ATP 802 B 1 
HETATM 6 O O1B ATP . . . K 3 112.149 157.427 205.355 1 43.67 ? O1B ATP 802 B 1 
HETATM 7 O O2B ATP . . . K 3 111.996 158.513 207.723 1 43.67 ? O2B ATP 802 B 1 
HETATM 8 O O3B ATP . . . K 3 112.486 156.052 207.388 1 43.67 ? O3B ATP 802 B 1 
HETATM 9 P PA ATP . . . K 3 109.534 157.142 205.396 1 43.67 ? PA ATP 802 B 1 
HETATM 10 O O1A ATP . . . K 3 110.052 156.032 204.522 1 43.67 ? O1A ATP 802 B 1 
HETATM 11 O O2A ATP . . . K 3 109.73 158.575 204.984 1 43.67 ? O2A ATP 802 B 1 
HETATM 12 O O3A ATP . . . K 3 110.219 156.973 206.824 1 43.67 ? O3A ATP 802 B 1 
HETATM 13 O O5' ATP . . . K 3 107.982 156.85 205.66 1 43.67 ? O5' ATP 802 B 1 
HETATM 14 C C5' ATP . . . K 3 107.156 156.68 204.521 1 43.67 ? C5' ATP 802 B 1 
HETATM 15 C C4' ATP . . . K 3 105.812 156.056 204.846 1 43.67 ? C4' ATP 802 B 1 
HETATM 16 O O4' ATP . . . K 3 105.23 156.736 205.945 1 43.67 ? O4' ATP 802 B 1 
HETATM 17 C C3' ATP . . . K 3 104.861 156.197 203.672 1 43.67 ? C3' ATP 802 B 1 
HETATM 18 O O3' ATP . . . K 3 104.01 155.067 203.495 1 43.67 ? O3' ATP 802 B 1 
HETATM 19 C C2' ATP . . . K 3 104.053 157.406 204.05 1 43.67 ? C2' ATP 802 B 1 
HETATM 20 O O2' ATP . . . K 3 102.752 157.428 203.469 1 43.67 ? O2' ATP 802 B 1 
HETATM 21 C C1' ATP . . . K 3 103.983 157.275 205.542 1 43.67 ? C1' ATP 802 B 1 
HETATM 22 N N9 ATP . . . K 3 103.819 158.57 206.184 1 43.67 ? N9 ATP 802 B 1 
HETATM 23 C C8 ATP . . . K 3 104.741 159.523 206.208 1 43.67 ? C8 ATP 802 B 1 
HETATM 24 N N7 ATP . . . K 3 104.32 160.607 206.887 1 43.67 ? N7 ATP 802 B 1 
HETATM 25 C C5 ATP . . . K 3 103.093 160.304 207.309 1 43.67 ? C5 ATP 802 B 1 
HETATM 26 C C6 ATP . . . K 3 102.07 160.984 208.092 1 43.67 ? C6 ATP 802 B 1 
HETATM 27 N N6 ATP . . . K 3 102.346 162.225 208.525 1 43.67 ? N6 ATP 802 B 1 
HETATM 28 N N1 ATP . . . K 3 100.913 160.326 208.323 1 43.67 ? N1 ATP 802 B 1 
HETATM 29 C C2 ATP . . . K 3 100.7 159.073 207.862 1 43.67 ? C2 ATP 802 B 1 
HETATM 30 N N3 ATP . . . K 3 101.596 158.402 207.139 1 43.67 ? N3 ATP 802 B 1 
HETATM 31 C C4 ATP . . . K 3 102.773 158.96 206.851 1 43.67 ? C4 ATP 802 B 1 
HETATM 32 H "H5'1" ATP . . . K 3 107.682 156.065 203.794 1 43.67 ? "H5'1" ATP 802 B 1 
HETATM 33 H "H5'2" ATP . . . K 3 106.983 157.653 204.082 1 43.67 ? "H5'2" ATP 802 B 1 
HETATM 34 H H4' ATP . . . K 3 105.944 154.998 205.091 1 43.67 ? H4' ATP 802 B 1 
HETATM 35 H H3' ATP . . . K 3 105.424 156.412 202.76 1 43.67 ? H3' ATP 802 B 1 
HETATM 36 H HO3' ATP . . . K 3 103.628 155.127 202.609 1 43.67 ? HO3' ATP 802 B 1 
HETATM 37 H H2' ATP . . . K 3 104.623 158.293 203.775 1 43.67 ? H2' ATP 802 B 1 
HETATM 38 H HO2' ATP . . . K 3 102.805 157.215 202.527 1 43.67 ? HO2' ATP 802 B 1 
HETATM 39 H H1' ATP . . . K 3 103.151 156.619 205.795 1 43.67 ? H1' ATP 802 B 1 
HETATM 40 H H8 ATP . . . K 3 105.687 159.405 205.723 1 43.67 ? H8 ATP 802 B 1 
HETATM 41 H HN61 ATP . . . K 3 103.243 162.621 208.294 1 43.67 ? HN61 ATP 802 B 1 
HETATM 42 H HN62 ATP . . . K 3 101.682 162.745 209.068 1 43.67 ? HN62 ATP 802 B 1 
HETATM 43 H H2 ATP . . . K 3 99.761 158.583 208.067 1 43.67 ? H2 ATP 802 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    76 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#