data_6MDP
#
_model_server_result.job_id            oaIv8-IVTfM1sxs0SqRv8Q 
_model_server_result.datetime_utc      '2024-12-26 20:27:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mdp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":801}' 
#
_entry.id    6MDP 
#
_exptl.entry_id    6MDP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MDP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MDP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 R N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     6MDP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 ADP A 1 801 1 ADP ADP . 
I 4 ATP A 1 802 3 ATP ATP . 
J 4 ATP B 1 801 2 ATP ATP . 
K 4 ATP B 1 802 4 ATP ATP . 
L 4 ATP C 1 801 5 ATP ATP . 
M 4 ATP C 1 802 6 ATP ATP . 
N 4 ATP D 1 801 7 ATP ATP . 
O 4 ATP D 1 802 8 ATP ATP . 
P 4 ATP E 1 801 9 ATP ATP . 
Q 3 ADP E 1 802 11 ADP ADP . 
R 4 ATP F 1 801 10 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . R 4 127.952 128.08 208.12 1 66.57 ? PG ATP 801 F 1 
HETATM 2 O O1G ATP . . . R 4 128.4 128.167 206.687 1 66.57 ? O1G ATP 801 F 1 
HETATM 3 O O2G ATP . . . R 4 126.867 129.087 208.408 1 66.57 ? O2G ATP 801 F 1 
HETATM 4 O O3G ATP . . . R 4 129.038 127.953 209.16 1 66.57 ? O3G ATP 801 F 1 
HETATM 5 P PB ATP . . . R 4 125.86 126.583 207.248 1 66.57 ? PB ATP 801 F 1 
HETATM 6 O O1B ATP . . . R 4 126.265 126.85 205.822 1 66.57 ? O1B ATP 801 F 1 
HETATM 7 O O2B ATP . . . R 4 124.784 127.422 207.891 1 66.57 ? O2B ATP 801 F 1 
HETATM 8 O O3B ATP . . . R 4 127.151 126.695 208.186 1 66.57 ? O3B ATP 801 F 1 
HETATM 9 P PA ATP . . . R 4 124.19 124.664 206.361 1 66.57 ? PA ATP 801 F 1 
HETATM 10 O O1A ATP . . . R 4 124.621 124.909 204.938 1 66.57 ? O1A ATP 801 F 1 
HETATM 11 O O2A ATP . . . R 4 122.982 125.337 206.943 1 66.57 ? O2A ATP 801 F 1 
HETATM 12 O O3A ATP . . . R 4 125.381 125.058 207.355 1 66.57 ? O3A ATP 801 F 1 
HETATM 13 O O5' ATP . . . R 4 124.027 123.071 206.6 1 66.57 ? O5' ATP 801 F 1 
HETATM 14 C C5' ATP . . . R 4 123.121 122.314 205.79 1 66.57 ? C5' ATP 801 F 1 
HETATM 15 C C4' ATP . . . R 4 123.104 120.813 206.109 1 66.57 ? C4' ATP 801 F 1 
HETATM 16 O O4' ATP . . . R 4 122.415 120.462 207.325 1 66.57 ? O4' ATP 801 F 1 
HETATM 17 C C3' ATP . . . R 4 122.387 120.056 205.005 1 66.57 ? C3' ATP 801 F 1 
HETATM 18 O O3' ATP . . . R 4 123.355 119.219 204.368 1 66.57 ? O3' ATP 801 F 1 
HETATM 19 C C2' ATP . . . R 4 121.274 119.256 205.659 1 66.57 ? C2' ATP 801 F 1 
HETATM 20 O O2' ATP . . . R 4 121.161 117.902 205.206 1 66.57 ? O2' ATP 801 F 1 
HETATM 21 C C1' ATP . . . R 4 121.545 119.321 207.154 1 66.57 ? C1' ATP 801 F 1 
HETATM 22 N N9 ATP . . . R 4 120.329 119.427 208.017 1 66.57 ? N9 ATP 801 F 1 
HETATM 23 C C8 ATP . . . R 4 120.164 118.62 209.079 1 66.57 ? C8 ATP 801 F 1 
HETATM 24 N N7 ATP . . . R 4 118.993 118.856 209.713 1 66.57 ? N7 ATP 801 F 1 
HETATM 25 C C5 ATP . . . R 4 118.361 119.82 209.043 1 66.57 ? C5 ATP 801 F 1 
HETATM 26 C C6 ATP . . . R 4 117.077 120.534 209.181 1 66.57 ? C6 ATP 801 F 1 
HETATM 27 N N6 ATP . . . R 4 116.219 120.254 210.188 1 66.57 ? N6 ATP 801 F 1 
HETATM 28 N N1 ATP . . . R 4 116.79 121.476 208.264 1 66.57 ? N1 ATP 801 F 1 
HETATM 29 C C2 ATP . . . R 4 117.627 121.769 207.258 1 66.57 ? C2 ATP 801 F 1 
HETATM 30 N N3 ATP . . . R 4 118.807 121.15 207.086 1 66.57 ? N3 ATP 801 F 1 
HETATM 31 C C4 ATP . . . R 4 119.232 120.185 207.92 1 66.57 ? C4 ATP 801 F 1 
HETATM 32 H "H5'1" ATP . . . R 4 123.418 122.449 204.749 1 66.57 ? "H5'1" ATP 801 F 1 
HETATM 33 H "H5'2" ATP . . . R 4 122.115 122.718 205.898 1 66.57 ? "H5'2" ATP 801 F 1 
HETATM 34 H H4' ATP . . . R 4 124.14 120.454 206.156 1 66.57 ? H4' ATP 801 F 1 
HETATM 35 H H3' ATP . . . R 4 121.946 120.758 204.287 1 66.57 ? H3' ATP 801 F 1 
HETATM 36 H HO3' ATP . . . R 4 122.948 118.716 203.657 1 66.57 ? HO3' ATP 801 F 1 
HETATM 37 H H2' ATP . . . R 4 120.34 119.776 205.426 1 66.57 ? H2' ATP 801 F 1 
HETATM 38 H HO2' ATP . . . R 4 120.953 117.897 204.262 1 66.57 ? HO2' ATP 801 F 1 
HETATM 39 H H1' ATP . . . R 4 122.089 118.409 207.426 1 66.57 ? H1' ATP 801 F 1 
HETATM 40 H H8 ATP . . . R 4 120.893 117.891 209.401 1 66.57 ? H8 ATP 801 F 1 
HETATM 41 H HN61 ATP . . . R 4 115.347 120.757 210.26 1 66.57 ? HN61 ATP 801 F 1 
HETATM 42 H HN62 ATP . . . R 4 116.451 119.543 210.866 1 66.57 ? HN62 ATP 801 F 1 
HETATM 43 H H2 ATP . . . R 4 117.336 122.539 206.555 1 66.57 ? H2 ATP 801 F 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    592 
_model_server_stats.query_time_ms           489 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#