data_6MDQ # _model_server_result.job_id 9rMUT0mGgmn7yG5l3ROLWA _model_server_result.datetime_utc '2024-10-20 20:55:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mdq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6MDQ # _exptl.entry_id 6MDQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MDQ _cell.length_a 94.244 _cell.length_b 94.244 _cell.length_c 142.345 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC CA FLC sing 83 n n CAC OA1 FLC doub 84 n n CAC OA2 FLC sing 85 n n CA CB FLC sing 86 n n CA HA1 FLC sing 87 n n CA HA2 FLC sing 88 n n CB CBC FLC sing 89 n n CB CG FLC sing 90 n n CB OHB FLC sing 91 n n CBC OB1 FLC doub 92 n n CBC OB2 FLC sing 93 n n CG CGC FLC sing 94 n n CG HG1 FLC sing 95 n n CG HG2 FLC sing 96 n n CGC OG1 FLC doub 97 n n CGC OG2 FLC sing 98 n n OHB HOB FLC sing 99 n n # _atom_sites.entry_id 6MDQ _atom_sites.fract_transf_matrix[1][1] 0.010611 _atom_sites.fract_transf_matrix[1][2] 0.006126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 601 1 FLC FLC . C 2 FLC A 1 602 2 FLC FLC . D 2 FLC A 1 603 3 FLC FLC . E 3 TES A 1 604 1 TES TES . F 3 TES A 1 605 2 TES TES . G 4 HOH A 1 701 90 HOH HOH . G 4 HOH A 2 702 128 HOH HOH . G 4 HOH A 3 703 7 HOH HOH . G 4 HOH A 4 704 78 HOH HOH . G 4 HOH A 5 705 244 HOH HOH . G 4 HOH A 6 706 116 HOH HOH . G 4 HOH A 7 707 307 HOH HOH . G 4 HOH A 8 708 6 HOH HOH . G 4 HOH A 9 709 73 HOH HOH . G 4 HOH A 10 710 324 HOH HOH . G 4 HOH A 11 711 182 HOH HOH . G 4 HOH A 12 712 5 HOH HOH . G 4 HOH A 13 713 113 HOH HOH . G 4 HOH A 14 714 35 HOH HOH . G 4 HOH A 15 715 58 HOH HOH . G 4 HOH A 16 716 178 HOH HOH . G 4 HOH A 17 717 50 HOH HOH . G 4 HOH A 18 718 210 HOH HOH . G 4 HOH A 19 719 19 HOH HOH . G 4 HOH A 20 720 242 HOH HOH . G 4 HOH A 21 721 393 HOH HOH . G 4 HOH A 22 722 13 HOH HOH . G 4 HOH A 23 723 170 HOH HOH . G 4 HOH A 24 724 88 HOH HOH . G 4 HOH A 25 725 61 HOH HOH . G 4 HOH A 26 726 145 HOH HOH . G 4 HOH A 27 727 86 HOH HOH . G 4 HOH A 28 728 144 HOH HOH . G 4 HOH A 29 729 284 HOH HOH . G 4 HOH A 30 730 1 HOH HOH . G 4 HOH A 31 731 37 HOH HOH . G 4 HOH A 32 732 18 HOH HOH . G 4 HOH A 33 733 416 HOH HOH . G 4 HOH A 34 734 184 HOH HOH . G 4 HOH A 35 735 94 HOH HOH . G 4 HOH A 36 736 33 HOH HOH . G 4 HOH A 37 737 91 HOH HOH . G 4 HOH A 38 738 160 HOH HOH . G 4 HOH A 39 739 206 HOH HOH . G 4 HOH A 40 740 130 HOH HOH . G 4 HOH A 41 741 436 HOH HOH . G 4 HOH A 42 742 360 HOH HOH . G 4 HOH A 43 743 17 HOH HOH . G 4 HOH A 44 744 46 HOH HOH . G 4 HOH A 45 745 211 HOH HOH . G 4 HOH A 46 746 276 HOH HOH . G 4 HOH A 47 747 279 HOH HOH . G 4 HOH A 48 748 72 HOH HOH . G 4 HOH A 49 749 62 HOH HOH . G 4 HOH A 50 750 143 HOH HOH . G 4 HOH A 51 751 125 HOH HOH . G 4 HOH A 52 752 76 HOH HOH . G 4 HOH A 53 753 25 HOH HOH . G 4 HOH A 54 754 99 HOH HOH . G 4 HOH A 55 755 64 HOH HOH . G 4 HOH A 56 756 167 HOH HOH . G 4 HOH A 57 757 16 HOH HOH . G 4 HOH A 58 758 131 HOH HOH . G 4 HOH A 59 759 537 HOH HOH . G 4 HOH A 60 760 484 HOH HOH . G 4 HOH A 61 761 451 HOH HOH . G 4 HOH A 62 762 48 HOH HOH . G 4 HOH A 63 763 14 HOH HOH . G 4 HOH A 64 764 83 HOH HOH . G 4 HOH A 65 765 254 HOH HOH . G 4 HOH A 66 766 142 HOH HOH . G 4 HOH A 67 767 404 HOH HOH . G 4 HOH A 68 768 42 HOH HOH . G 4 HOH A 69 769 225 HOH HOH . G 4 HOH A 70 770 36 HOH HOH . G 4 HOH A 71 771 68 HOH HOH . G 4 HOH A 72 772 66 HOH HOH . G 4 HOH A 73 773 84 HOH HOH . G 4 HOH A 74 774 41 HOH HOH . G 4 HOH A 75 775 207 HOH HOH . G 4 HOH A 76 776 453 HOH HOH . G 4 HOH A 77 777 373 HOH HOH . G 4 HOH A 78 778 101 HOH HOH . G 4 HOH A 79 779 55 HOH HOH . G 4 HOH A 80 780 87 HOH HOH . G 4 HOH A 81 781 402 HOH HOH . G 4 HOH A 82 782 29 HOH HOH . G 4 HOH A 83 783 47 HOH HOH . G 4 HOH A 84 784 174 HOH HOH . G 4 HOH A 85 785 31 HOH HOH . G 4 HOH A 86 786 98 HOH HOH . G 4 HOH A 87 787 199 HOH HOH . G 4 HOH A 88 788 63 HOH HOH . G 4 HOH A 89 789 364 HOH HOH . G 4 HOH A 90 790 149 HOH HOH . G 4 HOH A 91 791 539 HOH HOH . G 4 HOH A 92 792 550 HOH HOH . G 4 HOH A 93 793 150 HOH HOH . G 4 HOH A 94 794 156 HOH HOH . G 4 HOH A 95 795 12 HOH HOH . G 4 HOH A 96 796 54 HOH HOH . G 4 HOH A 97 797 89 HOH HOH . G 4 HOH A 98 798 163 HOH HOH . G 4 HOH A 99 799 437 HOH HOH . G 4 HOH A 100 800 120 HOH HOH . G 4 HOH A 101 801 103 HOH HOH . G 4 HOH A 102 802 22 HOH HOH . G 4 HOH A 103 803 122 HOH HOH . G 4 HOH A 104 804 39 HOH HOH . G 4 HOH A 105 805 8 HOH HOH . G 4 HOH A 106 806 119 HOH HOH . G 4 HOH A 107 807 141 HOH HOH . G 4 HOH A 108 808 114 HOH HOH . G 4 HOH A 109 809 97 HOH HOH . G 4 HOH A 110 810 153 HOH HOH . G 4 HOH A 111 811 82 HOH HOH . G 4 HOH A 112 812 26 HOH HOH . G 4 HOH A 113 813 118 HOH HOH . G 4 HOH A 114 814 269 HOH HOH . G 4 HOH A 115 815 190 HOH HOH . G 4 HOH A 116 816 558 HOH HOH . G 4 HOH A 117 817 15 HOH HOH . G 4 HOH A 118 818 105 HOH HOH . G 4 HOH A 119 819 524 HOH HOH . G 4 HOH A 120 820 102 HOH HOH . G 4 HOH A 121 821 123 HOH HOH . G 4 HOH A 122 822 491 HOH HOH . G 4 HOH A 123 823 40 HOH HOH . G 4 HOH A 124 824 28 HOH HOH . G 4 HOH A 125 825 79 HOH HOH . G 4 HOH A 126 826 498 HOH HOH . G 4 HOH A 127 827 69 HOH HOH . G 4 HOH A 128 828 135 HOH HOH . G 4 HOH A 129 829 65 HOH HOH . G 4 HOH A 130 830 559 HOH HOH . G 4 HOH A 131 831 552 HOH HOH . G 4 HOH A 132 832 23 HOH HOH . G 4 HOH A 133 833 229 HOH HOH . G 4 HOH A 134 834 464 HOH HOH . G 4 HOH A 135 835 109 HOH HOH . G 4 HOH A 136 836 43 HOH HOH . G 4 HOH A 137 837 356 HOH HOH . G 4 HOH A 138 838 38 HOH HOH . G 4 HOH A 139 839 24 HOH HOH . G 4 HOH A 140 840 448 HOH HOH . G 4 HOH A 141 841 71 HOH HOH . G 4 HOH A 142 842 332 HOH HOH . G 4 HOH A 143 843 341 HOH HOH . G 4 HOH A 144 844 9 HOH HOH . G 4 HOH A 145 845 44 HOH HOH . G 4 HOH A 146 846 454 HOH HOH . G 4 HOH A 147 847 578 HOH HOH . G 4 HOH A 148 848 49 HOH HOH . G 4 HOH A 149 849 10 HOH HOH . G 4 HOH A 150 850 21 HOH HOH . G 4 HOH A 151 851 265 HOH HOH . G 4 HOH A 152 852 11 HOH HOH . G 4 HOH A 153 853 115 HOH HOH . G 4 HOH A 154 854 80 HOH HOH . G 4 HOH A 155 855 569 HOH HOH . G 4 HOH A 156 856 161 HOH HOH . G 4 HOH A 157 857 478 HOH HOH . G 4 HOH A 158 858 4 HOH HOH . G 4 HOH A 159 859 474 HOH HOH . G 4 HOH A 160 860 32 HOH HOH . G 4 HOH A 161 861 313 HOH HOH . G 4 HOH A 162 862 556 HOH HOH . G 4 HOH A 163 863 186 HOH HOH . G 4 HOH A 164 864 241 HOH HOH . G 4 HOH A 165 865 514 HOH HOH . G 4 HOH A 166 866 522 HOH HOH . G 4 HOH A 167 867 117 HOH HOH . G 4 HOH A 168 868 349 HOH HOH . G 4 HOH A 169 869 136 HOH HOH . G 4 HOH A 170 870 479 HOH HOH . G 4 HOH A 171 871 208 HOH HOH . G 4 HOH A 172 872 154 HOH HOH . G 4 HOH A 173 873 121 HOH HOH . G 4 HOH A 174 874 536 HOH HOH . G 4 HOH A 175 875 350 HOH HOH . G 4 HOH A 176 876 189 HOH HOH . G 4 HOH A 177 877 312 HOH HOH . G 4 HOH A 178 878 482 HOH HOH . G 4 HOH A 179 879 566 HOH HOH . G 4 HOH A 180 880 518 HOH HOH . G 4 HOH A 181 881 20 HOH HOH . G 4 HOH A 182 882 544 HOH HOH . G 4 HOH A 183 883 249 HOH HOH . G 4 HOH A 184 884 107 HOH HOH . G 4 HOH A 185 885 520 HOH HOH . G 4 HOH A 186 886 34 HOH HOH . G 4 HOH A 187 887 81 HOH HOH . G 4 HOH A 188 888 586 HOH HOH . G 4 HOH A 189 889 70 HOH HOH . G 4 HOH A 190 890 260 HOH HOH . G 4 HOH A 191 891 579 HOH HOH . G 4 HOH A 192 892 507 HOH HOH . G 4 HOH A 193 893 194 HOH HOH . G 4 HOH A 194 894 445 HOH HOH . G 4 HOH A 195 895 494 HOH HOH . G 4 HOH A 196 896 129 HOH HOH . G 4 HOH A 197 897 543 HOH HOH . G 4 HOH A 198 898 492 HOH HOH . G 4 HOH A 199 899 381 HOH HOH . G 4 HOH A 200 900 383 HOH HOH . G 4 HOH A 201 901 110 HOH HOH . G 4 HOH A 202 902 352 HOH HOH . G 4 HOH A 203 903 124 HOH HOH . G 4 HOH A 204 904 486 HOH HOH . G 4 HOH A 205 905 446 HOH HOH . G 4 HOH A 206 906 209 HOH HOH . G 4 HOH A 207 907 108 HOH HOH . G 4 HOH A 208 908 513 HOH HOH . G 4 HOH A 209 909 511 HOH HOH . G 4 HOH A 210 910 164 HOH HOH . G 4 HOH A 211 911 111 HOH HOH . G 4 HOH A 212 912 517 HOH HOH . G 4 HOH A 213 913 555 HOH HOH . G 4 HOH A 214 914 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . C 2 39.123 23.271 58.848 1 105.91 ? CAC FLC 602 A 1 HETATM 2 C CA FLC . . . C 2 40.041 22.793 59.953 1 104.38 ? CA FLC 602 A 1 HETATM 3 C CB FLC . . . C 2 39.673 21.408 60.486 1 97.31 ? CB FLC 602 A 1 HETATM 4 C CBC FLC . . . C 2 39.656 20.398 59.36 1 96.42 ? CBC FLC 602 A 1 HETATM 5 C CG FLC . . . C 2 40.699 20.992 61.539 1 91.72 ? CG FLC 602 A 1 HETATM 6 C CGC FLC . . . C 2 40.293 19.715 62.24 1 99.51 ? CGC FLC 602 A 1 HETATM 7 O OA1 FLC . . . C 2 39.618 23.98 57.945 1 88.32 ? OA1 FLC 602 A 1 HETATM 8 O OA2 FLC . . . C 2 37.91 22.961 58.866 1 73.21 ? OA2 FLC 602 A 1 HETATM 9 O OB1 FLC . . . C 2 40.7 20.228 58.693 1 90.87 ? OB1 FLC 602 A 1 HETATM 10 O OB2 FLC . . . C 2 38.601 19.768 59.13 1 81.87 ? OB2 FLC 602 A 1 HETATM 11 O OG1 FLC . . . C 2 40.742 18.63 61.811 1 102.12 ? OG1 FLC 602 A 1 HETATM 12 O OG2 FLC . . . C 2 39.527 19.794 63.224 1 81.03 ? OG2 FLC 602 A 1 HETATM 13 O OHB FLC . . . C 2 38.376 21.482 61.095 1 74.93 ? OHB FLC 602 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #