data_6ME2 # _model_server_result.job_id w6I_va9IBhU6xEKhPjJXIw _model_server_result.datetime_utc '2024-10-11 01:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6me2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6ME2 # _exptl.entry_id 6ME2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 259.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ME2 _cell.length_a 122.3 _cell.length_b 122.3 _cell.length_c 122.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ME2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 91 A CYS 100 1_555 A SG CYS 168 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C ILE 120 A ILE 129 1_555 A N YCM 121 A YCM 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale2 A C YCM 121 A YCM 130 1_555 A N HIS 122 A HIS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C ASP 212 A ASP 1003 1_555 A N YCM 213 A YCM 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C YCM 213 A YCM 1004 1_555 A N SER 214 A SER 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C16 H21 N O2' _chem_comp.formula_weight 259.343 _chem_comp.id JEV _chem_comp.mon_nstd_flag . _chem_comp.name N-{2-[(8S)-1,6,7,8-tetrahydro-2H-indeno[5,4-b]furan-8-yl]ethyl}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Ramelteon # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C3 JEV doub 173 n n C1 C2 JEV sing 174 n n C3 C2 JEV sing 175 n n C3 N1 JEV sing 176 n n C4 N1 JEV sing 177 n n C4 C5 JEV sing 178 n n C5 C6 JEV sing 179 n n C7 C6 JEV sing 180 n n C7 C8 JEV sing 181 n n C6 C16 JEV sing 182 n n C8 C9 JEV sing 183 n n C16 C9 JEV doub 184 n y C16 C13 JEV sing 185 n y C9 C10 JEV sing 186 n y C13 C14 JEV sing 187 n n C13 C12 JEV doub 188 n y C10 C11 JEV doub 189 n y C14 C15 JEV sing 190 n n C12 C11 JEV sing 191 n y C12 O1 JEV sing 192 n n C15 O1 JEV sing 193 n n C4 H1 JEV sing 194 n n C4 H2 JEV sing 195 n n C2 H3 JEV sing 196 n n C2 H4 JEV sing 197 n n C1 H5 JEV sing 198 n n C1 H6 JEV sing 199 n n C1 H7 JEV sing 200 n n C7 H8 JEV sing 201 n n C7 H9 JEV sing 202 n n C8 H10 JEV sing 203 n n C8 H11 JEV sing 204 n n C10 H12 JEV sing 205 n n C11 H13 JEV sing 206 n n C15 H14 JEV sing 207 n n C15 H15 JEV sing 208 n n C14 H16 JEV sing 209 n n C14 H17 JEV sing 210 n n C6 H18 JEV sing 211 n n C5 H19 JEV sing 212 n n C5 H20 JEV sing 213 n n N1 H21 JEV sing 214 n n # _atom_sites.entry_id 6ME2 _atom_sites.fract_transf_matrix[1][1] 0.008177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008177 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008143 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JEV A 1 1201 999 JEV RES . C 3 OLA A 1 1202 1202 OLA OLA . D 3 OLA A 1 1203 1203 OLA OLA . E 4 PEG A 1 1204 1 PEG PEG . F 5 HOH A 1 1301 3 HOH HOH . F 5 HOH A 2 1302 1209 HOH HOH . F 5 HOH A 3 1303 1214 HOH HOH . F 5 HOH A 4 1304 2 HOH HOH . F 5 HOH A 5 1305 1224 HOH HOH . F 5 HOH A 6 1306 1229 HOH HOH . F 5 HOH A 7 1307 1218 HOH HOH . F 5 HOH A 8 1308 1210 HOH HOH . F 5 HOH A 9 1309 1227 HOH HOH . F 5 HOH A 10 1310 1208 HOH HOH . F 5 HOH A 11 1311 1219 HOH HOH . F 5 HOH A 12 1312 1225 HOH HOH . F 5 HOH A 13 1313 1223 HOH HOH . F 5 HOH A 14 1314 1 HOH HOH . F 5 HOH A 15 1315 1215 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JEV . . . B 2 24.378 -21.359 46.386 1 101.37 ? C4 JEV 1201 A 1 HETATM 2 C C3 JEV . . . B 2 23.213 -19.185 46.931 1 106.25 ? C3 JEV 1201 A 1 HETATM 3 C C2 JEV . . . B 2 24.432 -18.756 47.77 1 107.11 ? C2 JEV 1201 A 1 HETATM 4 O O2 JEV . . . B 2 22.235 -18.442 46.847 1 108.01 ? O2 JEV 1201 A 1 HETATM 5 C C1 JEV . . . B 2 24.859 -17.329 47.417 1 107.52 ? C1 JEV 1201 A 1 HETATM 6 O O1 JEV . . . B 2 28.975 -24.447 48.367 1 102.73 ? O1 JEV 1201 A 1 HETATM 7 C C7 JEV . . . B 2 23.186 -24.789 46.842 1 97.63 ? C7 JEV 1201 A 1 HETATM 8 C C8 JEV . . . B 2 23.615 -25.803 47.89 1 97.98 ? C8 JEV 1201 A 1 HETATM 9 C C9 JEV . . . B 2 24.98 -25.623 48.119 1 99.01 ? C9 JEV 1201 A 1 HETATM 10 C C10 JEV . . . B 2 25.845 -26.376 48.911 1 99.3 ? C10 JEV 1201 A 1 HETATM 11 C C11 JEV . . . B 2 27.198 -26.045 48.999 1 100.36 ? C11 JEV 1201 A 1 HETATM 12 C C12 JEV . . . B 2 27.701 -24.922 48.345 1 101.04 ? C12 JEV 1201 A 1 HETATM 13 C C15 JEV . . . B 2 29.08 -23.523 47.263 1 102.93 ? C15 JEV 1201 A 1 HETATM 14 C C14 JEV . . . B 2 27.663 -23.053 47.012 1 101.14 ? C14 JEV 1201 A 1 HETATM 15 C C13 JEV . . . B 2 26.84 -24.163 47.575 1 100.69 ? C13 JEV 1201 A 1 HETATM 16 C C16 JEV . . . B 2 25.476 -24.497 47.454 1 99.94 ? C16 JEV 1201 A 1 HETATM 17 C C6 JEV . . . B 2 24.353 -23.843 46.691 1 99.02 ? C6 JEV 1201 A 1 HETATM 18 C C5 JEV . . . B 2 23.995 -22.496 47.326 1 100.78 ? C5 JEV 1201 A 1 HETATM 19 N N1 JEV . . . B 2 23.258 -20.399 46.327 1 103.29 ? N1 JEV 1201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #