data_6ME3 # _model_server_result.job_id FzswYEFp7gp8ZKd9b0sMuw _model_server_result.datetime_utc '2024-11-28 02:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6me3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6ME3 # _exptl.entry_id 6ME3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ME3 _cell.length_a 122.4 _cell.length_b 122.4 _cell.length_c 122.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ME3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 91 A CYS 100 1_555 A SG CYS 168 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A C ASP 212 A ASP 1003 1_555 A N YCM 213 A YCM 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C YCM 213 A YCM 1004 1_555 A N SER 214 A SER 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C19 H20 N2 O2' _chem_comp.formula_weight 308.374 _chem_comp.id JEY _chem_comp.mon_nstd_flag . _chem_comp.name N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-phenylmelatonin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C17 JEY doub 173 n y C16 C15 JEY sing 174 n y C17 C18 JEY sing 175 n y C15 C14 JEY doub 176 n y C18 C19 JEY doub 177 n y O2 C2 JEY doub 178 n n C14 C19 JEY sing 179 n y C19 C6 JEY sing 180 n n C1 C2 JEY sing 181 n n C2 N1 JEY sing 182 n n N1 C3 JEY sing 183 n n C3 C4 JEY sing 184 n n C4 C5 JEY sing 185 n n C6 C5 JEY doub 186 n y C6 N2 JEY sing 187 n y C5 C12 JEY sing 188 n y N2 C7 JEY sing 189 n y C12 C7 JEY doub 190 n y C12 C11 JEY sing 191 n y C7 C8 JEY sing 192 n y C11 C10 JEY doub 193 n y C8 C9 JEY doub 194 n y C10 C9 JEY sing 195 n y C10 O1 JEY sing 196 n n O1 C13 JEY sing 197 n n C4 H1 JEY sing 198 n n C4 H2 JEY sing 199 n n C3 H3 JEY sing 200 n n C3 H4 JEY sing 201 n n C1 H5 JEY sing 202 n n C1 H6 JEY sing 203 n n C1 H7 JEY sing 204 n n N1 H8 JEY sing 205 n n C11 H9 JEY sing 206 n n C13 H10 JEY sing 207 n n C13 H11 JEY sing 208 n n C13 H12 JEY sing 209 n n C14 H13 JEY sing 210 n n C15 H14 JEY sing 211 n n C16 H15 JEY sing 212 n n C17 H16 JEY sing 213 n n C18 H17 JEY sing 214 n n N2 H18 JEY sing 215 n n C8 H19 JEY sing 216 n n C9 H20 JEY sing 217 n n # _atom_sites.entry_id 6ME3 _atom_sites.fract_transf_matrix[1][1] 0.00817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JEY A 1 1201 999 JEY RES . C 3 OLA A 1 1202 1301 OLA OLA . D 4 PEG A 1 1203 1 PEG PEG . E 5 HOH A 1 1301 1302 HOH HOH . E 5 HOH A 2 1302 1304 HOH HOH . E 5 HOH A 3 1303 1303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 JEY . . . B 2 24.434 -22.984 46.304 1 87.45 ? C4 JEY 1201 A 1 HETATM 2 C C3 JEY . . . B 2 24.629 -21.866 47.319 1 87.66 ? C3 JEY 1201 A 1 HETATM 3 C C2 JEY . . . B 2 23.93 -19.514 47.454 1 91.18 ? C2 JEY 1201 A 1 HETATM 4 O O2 JEY . . . B 2 23.671 -19.556 48.663 1 94.96 ? O2 JEY 1201 A 1 HETATM 5 C C1 JEY . . . B 2 23.715 -18.245 46.664 1 88.24 ? C1 JEY 1201 A 1 HETATM 6 O O1 JEY . . . B 2 29.408 -24.424 48.163 1 99.44 ? O1 JEY 1201 A 1 HETATM 7 N N1 JEY . . . B 2 24.372 -20.562 46.736 1 89.15 ? N1 JEY 1201 A 1 HETATM 8 C C10 JEY . . . B 2 28.135 -24.928 48.192 1 99.34 ? C10 JEY 1201 A 1 HETATM 9 C C11 JEY . . . B 2 27.087 -24.27 47.536 1 98.81 ? C11 JEY 1201 A 1 HETATM 10 C C12 JEY . . . B 2 25.785 -24.774 47.551 1 95.53 ? C12 JEY 1201 A 1 HETATM 11 C C13 JEY . . . B 2 29.52 -23.077 47.673 1 97.28 ? C13 JEY 1201 A 1 HETATM 12 C C14 JEY . . . B 2 21.336 -24.076 47.136 1 95.38 ? C14 JEY 1201 A 1 HETATM 13 C C15 JEY . . . B 2 20.007 -24.107 46.67 1 96.82 ? C15 JEY 1201 A 1 HETATM 14 C C16 JEY . . . B 2 19.485 -25.26 46.052 1 96.2 ? C16 JEY 1201 A 1 HETATM 15 C C17 JEY . . . B 2 20.302 -26.391 45.895 1 95.05 ? C17 JEY 1201 A 1 HETATM 16 C C18 JEY . . . B 2 21.64 -26.349 46.335 1 94.48 ? C18 JEY 1201 A 1 HETATM 17 C C19 JEY . . . B 2 22.165 -25.199 46.957 1 93.87 ? C19 JEY 1201 A 1 HETATM 18 N N2 JEY . . . B 2 24.171 -26.252 48.047 1 93.85 ? N2 JEY 1201 A 1 HETATM 19 C C5 JEY . . . B 2 24.577 -24.306 47.013 1 91.71 ? C5 JEY 1201 A 1 HETATM 20 C C6 JEY . . . B 2 23.573 -25.204 47.385 1 92.71 ? C6 JEY 1201 A 1 HETATM 21 C C7 JEY . . . B 2 25.519 -25.968 48.214 1 95.02 ? C7 JEY 1201 A 1 HETATM 22 C C8 JEY . . . B 2 26.564 -26.636 48.866 1 96.72 ? C8 JEY 1201 A 1 HETATM 23 C C9 JEY . . . B 2 27.874 -26.14 48.838 1 98.09 ? C9 JEY 1201 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #