data_6ME6 # _model_server_result.job_id 2Ks5N1Oi_SvcR2Uw-2rwNw _model_server_result.datetime_utc '2024-11-22 21:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6me6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2202}' # _entry.id 6ME6 # _exptl.entry_id 6ME6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.72 _cell.angle_gamma 90 _cell.entry_id 6ME6 _cell.length_a 69.5 _cell.length_b 146.18 _cell.length_c 77.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ME6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 113 1_555 A SG CYS 266 A CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 189 B CYS 113 1_555 B SG CYS 266 B CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A SG CYS 313 A CYS 1005 1_555 D ZN ZN . A ZN 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A SG CYS 316 A CYS 1008 1_555 D ZN ZN . A ZN 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? metalc ? metalc3 A SG CYS 346 A CYS 1038 1_555 D ZN ZN . A ZN 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc4 A SG CYS 349 A CYS 1041 1_555 D ZN ZN . A ZN 2202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 280 n n C10 C9 OLC doub 281 n n C10 C11 OLC sing 282 n n C9 C8 OLC sing 283 n n C17 C16 OLC sing 284 z n C11 C12 OLC sing 285 n n C8 C7 OLC sing 286 n n C24 C22 OLC sing 287 n n C24 O25 OLC sing 288 n n C16 C15 OLC sing 289 n n C12 C13 OLC sing 290 n n C7 C6 OLC sing 291 n n C15 C14 OLC sing 292 n n C13 C14 OLC sing 293 n n C6 C5 OLC sing 294 n n C5 C4 OLC sing 295 n n C4 C3 OLC sing 296 n n C3 C2 OLC sing 297 n n C2 C1 OLC sing 298 n n C21 C22 OLC sing 299 n n C21 O20 OLC sing 300 n n C1 O19 OLC doub 301 n n C1 O20 OLC sing 302 n n C22 O23 OLC sing 303 n n C18 H18 OLC sing 304 n n C18 H18A OLC sing 305 n n C18 H18B OLC sing 306 n n C10 H10 OLC sing 307 n n C9 H9 OLC sing 308 n n C17 H17 OLC sing 309 n n C17 H17A OLC sing 310 n n C11 H11 OLC sing 311 n n C11 H11A OLC sing 312 n n C8 H8 OLC sing 313 n n C8 H8A OLC sing 314 n n C24 H24 OLC sing 315 n n C24 H24A OLC sing 316 n n C16 H16 OLC sing 317 n n C16 H16A OLC sing 318 n n C12 H12 OLC sing 319 n n C12 H12A OLC sing 320 n n C7 H7 OLC sing 321 n n C7 H7A OLC sing 322 n n C15 H15 OLC sing 323 n n C15 H15A OLC sing 324 n n C13 H13 OLC sing 325 n n C13 H13A OLC sing 326 n n C6 H6 OLC sing 327 n n C6 H6A OLC sing 328 n n C14 H14 OLC sing 329 n n C14 H14A OLC sing 330 n n C5 H5 OLC sing 331 n n C5 H5A OLC sing 332 n n C4 H4 OLC sing 333 n n C4 H4A OLC sing 334 n n C3 H3 OLC sing 335 n n C3 H3A OLC sing 336 n n C2 H2 OLC sing 337 n n C2 H2A OLC sing 338 n n C21 H21 OLC sing 339 n n C21 H21A OLC sing 340 n n C22 H22 OLC sing 341 n n O25 HO25 OLC sing 342 n n O23 HO23 OLC sing 343 n n # _atom_sites.entry_id 6ME6 _atom_sites.fract_transf_matrix[1][1] 0.014388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005732 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013929 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JEY A 1 2201 1 JEY RES . D 3 ZN A 1 2202 3 ZN ZN . E 2 JEY B 1 2201 2 JEY RES . F 4 OLC B 1 2202 4 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . F 4 15.511 -14.219 132.018 1 138.01 ? C24 OLC 2202 B 1 HETATM 2 C C4 OLC . . . F 4 18.797 -21.536 130.449 1 134.79 ? C4 OLC 2202 B 1 HETATM 3 C C3 OLC . . . F 4 17.883 -20.4 129.991 1 136.61 ? C3 OLC 2202 B 1 HETATM 4 C C2 OLC . . . F 4 17.056 -19.85 131.154 1 138.87 ? C2 OLC 2202 B 1 HETATM 5 C C21 OLC . . . F 4 16.288 -16.554 132.55 1 139.2 ? C21 OLC 2202 B 1 HETATM 6 C C1 OLC . . . F 4 16.661 -18.396 130.942 1 141.3 ? C1 OLC 2202 B 1 HETATM 7 C C22 OLC . . . F 4 16.701 -15.081 132.443 1 138.9 ? C22 OLC 2202 B 1 HETATM 8 O O19 OLC . . . F 4 15.899 -18.1 130.024 1 142.68 ? O19 OLC 2202 B 1 HETATM 9 O O25 OLC . . . F 4 15.777 -12.835 132.294 1 136.84 ? O25 OLC 2202 B 1 HETATM 10 O O23 OLC . . . F 4 17.181 -14.612 133.712 1 138.51 ? O23 OLC 2202 B 1 HETATM 11 O O20 OLC . . . F 4 17.151 -17.405 131.781 1 140.54 ? O20 OLC 2202 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #