data_6MF9
#
_model_server_result.job_id            yzyBPvfyzBRReiLM1Y8rcQ 
_model_server_result.datetime_utc      '2024-11-23 17:31:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3000}' 
#
_entry.id    6MF9 
#
_exptl.entry_id    6MF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              521.654 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MF9 
_cell.length_a            41.785 
_cell.length_b            89.869 
_cell.length_c            95.635 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C28 H39 N7 O3' 
_chem_comp.formula_weight    521.654 
_chem_comp.id                R78 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C4 R78 doub 277 n y 
N1 C1 R78 sing 278 n y 
N3 C5 R78 sing 279 n n 
N3 C8 R78 sing 280 n n 
N3 C2 R78 sing 281 n n 
C4 C3 R78 sing 282 n y 
C5 C6 R78 sing 283 n n 
C5 C9 R78 sing 284 n n 
C6 O1 R78 doub 285 n n 
C6 N4 R78 sing 286 n n 
C7 C20 R78 doub 287 n y 
C7 C16 R78 sing 288 n y 
C7 N5 R78 sing 289 n n 
C8 C15 R78 sing 290 n n 
C8 C12 R78 sing 291 n n 
C10 C9 R78 sing 292 n n 
C13 C14 R78 sing 293 n n 
C13 C12 R78 sing 294 n n 
C15 C14 R78 sing 295 n n 
C17 C18 R78 sing 296 n y 
C17 C16 R78 doub 297 n y 
C20 C19 R78 sing 298 n y 
C21 O2 R78 doub 299 n n 
C21 N6 R78 sing 300 n n 
C21 C18 R78 sing 301 n n 
C22 N6 R78 sing 302 n n 
C22 C29 R78 sing 303 n n 
C22 C23 R78 sing 304 n n 
C24 N7 R78 sing 305 n n 
C24 C23 R78 sing 306 n n 
C28 C29 R78 sing 307 n n 
C28 N7 R78 sing 308 n n 
N7 C30 R78 sing 309 n n 
C18 C19 R78 doub 310 n y 
C16 O3 R78 sing 311 n n 
O3 C31 R78 sing 312 n n 
N5 C1 R78 sing 313 n n 
C1 N2 R78 doub 314 n y 
N2 C2 R78 sing 315 n y 
C2 C3 R78 doub 316 n y 
N4 C11 R78 sing 317 n n 
N4 C3 R78 sing 318 n n 
C4 H4 R78 sing 319 n n 
C5 H5 R78 sing 320 n n 
C8 H8 R78 sing 321 n n 
C10 H10 R78 sing 322 n n 
C10 H10A R78 sing 323 n n 
C10 H10B R78 sing 324 n n 
C13 H13 R78 sing 325 n n 
C13 H13A R78 sing 326 n n 
C15 H15 R78 sing 327 n n 
C15 H15A R78 sing 328 n n 
C17 H17 R78 sing 329 n n 
C20 H20 R78 sing 330 n n 
C22 H22 R78 sing 331 n n 
C24 H24 R78 sing 332 n n 
C24 H24A R78 sing 333 n n 
C28 H28 R78 sing 334 n n 
C28 H28A R78 sing 335 n n 
N6 HN6 R78 sing 336 n n 
C29 H29 R78 sing 337 n n 
C29 H29A R78 sing 338 n n 
C30 H30 R78 sing 339 n n 
C30 H30A R78 sing 340 n n 
C30 H30B R78 sing 341 n n 
C23 H23 R78 sing 342 n n 
C23 H23A R78 sing 343 n n 
C31 H31 R78 sing 344 n n 
C31 H31A R78 sing 345 n n 
C31 H31B R78 sing 346 n n 
C19 H19 R78 sing 347 n n 
N5 HN5 R78 sing 348 n n 
C14 H14 R78 sing 349 n n 
C14 H14A R78 sing 350 n n 
C12 H12 R78 sing 351 n n 
C12 H12A R78 sing 352 n n 
C9 H9 R78 sing 353 n n 
C9 H9A R78 sing 354 n n 
C11 H11 R78 sing 355 n n 
C11 H11A R78 sing 356 n n 
C11 H11B R78 sing 357 n n 
#
_atom_sites.entry_id                     6MF9 
_atom_sites.fract_transf_matrix[1][1]    0.023932 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011127 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 R78 A 1 3000 3000 R78 R78 . 
D 2 R78 B 1 3000 3000 R78 R78 . 
E 3 HOH A 1 3101 88 HOH HOH . 
E 3 HOH A 2 3102 78 HOH HOH . 
E 3 HOH A 3 3103 23 HOH HOH . 
E 3 HOH A 4 3104 25 HOH HOH . 
E 3 HOH A 5 3105 96 HOH HOH . 
E 3 HOH A 6 3106 84 HOH HOH . 
E 3 HOH A 7 3107 80 HOH HOH . 
E 3 HOH A 8 3108 19 HOH HOH . 
E 3 HOH A 9 3109 48 HOH HOH . 
E 3 HOH A 10 3110 31 HOH HOH . 
E 3 HOH A 11 3111 16 HOH HOH . 
E 3 HOH A 12 3112 28 HOH HOH . 
E 3 HOH A 13 3113 74 HOH HOH . 
E 3 HOH A 14 3114 45 HOH HOH . 
E 3 HOH A 15 3115 54 HOH HOH . 
E 3 HOH A 16 3116 94 HOH HOH . 
E 3 HOH A 17 3117 9 HOH HOH . 
E 3 HOH A 18 3118 42 HOH HOH . 
E 3 HOH A 19 3119 30 HOH HOH . 
E 3 HOH A 20 3120 53 HOH HOH . 
E 3 HOH A 21 3121 29 HOH HOH . 
E 3 HOH A 22 3122 41 HOH HOH . 
E 3 HOH A 23 3123 24 HOH HOH . 
E 3 HOH A 24 3124 56 HOH HOH . 
E 3 HOH A 25 3125 2 HOH HOH . 
E 3 HOH A 26 3126 3 HOH HOH . 
E 3 HOH A 27 3127 12 HOH HOH . 
E 3 HOH A 28 3128 15 HOH HOH . 
E 3 HOH A 29 3129 87 HOH HOH . 
E 3 HOH A 30 3130 55 HOH HOH . 
E 3 HOH A 31 3131 72 HOH HOH . 
E 3 HOH A 32 3132 49 HOH HOH . 
E 3 HOH A 33 3133 8 HOH HOH . 
E 3 HOH A 34 3134 6 HOH HOH . 
E 3 HOH A 35 3135 14 HOH HOH . 
E 3 HOH A 36 3136 83 HOH HOH . 
E 3 HOH A 37 3137 21 HOH HOH . 
E 3 HOH A 38 3138 17 HOH HOH . 
E 3 HOH A 39 3139 7 HOH HOH . 
E 3 HOH A 40 3140 91 HOH HOH . 
E 3 HOH A 41 3141 81 HOH HOH . 
E 3 HOH A 42 3142 46 HOH HOH . 
E 3 HOH A 43 3143 76 HOH HOH . 
E 3 HOH A 44 3144 95 HOH HOH . 
E 3 HOH A 45 3145 79 HOH HOH . 
E 3 HOH A 46 3146 51 HOH HOH . 
E 3 HOH A 47 3147 27 HOH HOH . 
E 3 HOH A 48 3148 70 HOH HOH . 
E 3 HOH A 49 3149 71 HOH HOH . 
E 3 HOH A 50 3150 57 HOH HOH . 
F 3 HOH B 1 3101 65 HOH HOH . 
F 3 HOH B 2 3102 47 HOH HOH . 
F 3 HOH B 3 3103 5 HOH HOH . 
F 3 HOH B 4 3104 93 HOH HOH . 
F 3 HOH B 5 3105 64 HOH HOH . 
F 3 HOH B 6 3106 34 HOH HOH . 
F 3 HOH B 7 3107 4 HOH HOH . 
F 3 HOH B 8 3108 11 HOH HOH . 
F 3 HOH B 9 3109 50 HOH HOH . 
F 3 HOH B 10 3110 22 HOH HOH . 
F 3 HOH B 11 3111 36 HOH HOH . 
F 3 HOH B 12 3112 68 HOH HOH . 
F 3 HOH B 13 3113 58 HOH HOH . 
F 3 HOH B 14 3114 86 HOH HOH . 
F 3 HOH B 15 3115 52 HOH HOH . 
F 3 HOH B 16 3116 33 HOH HOH . 
F 3 HOH B 17 3117 40 HOH HOH . 
F 3 HOH B 18 3118 10 HOH HOH . 
F 3 HOH B 19 3119 35 HOH HOH . 
F 3 HOH B 20 3120 61 HOH HOH . 
F 3 HOH B 21 3121 32 HOH HOH . 
F 3 HOH B 22 3122 39 HOH HOH . 
F 3 HOH B 23 3123 82 HOH HOH . 
F 3 HOH B 24 3124 18 HOH HOH . 
F 3 HOH B 25 3125 60 HOH HOH . 
F 3 HOH B 26 3126 67 HOH HOH . 
F 3 HOH B 27 3127 85 HOH HOH . 
F 3 HOH B 28 3128 26 HOH HOH . 
F 3 HOH B 29 3129 13 HOH HOH . 
F 3 HOH B 30 3130 59 HOH HOH . 
F 3 HOH B 31 3131 38 HOH HOH . 
F 3 HOH B 32 3132 77 HOH HOH . 
F 3 HOH B 33 3133 43 HOH HOH . 
F 3 HOH B 34 3134 75 HOH HOH . 
F 3 HOH B 35 3135 44 HOH HOH . 
F 3 HOH B 36 3136 20 HOH HOH . 
F 3 HOH B 37 3137 89 HOH HOH . 
F 3 HOH B 38 3138 1 HOH HOH . 
F 3 HOH B 39 3139 92 HOH HOH . 
F 3 HOH B 40 3140 90 HOH HOH . 
F 3 HOH B 41 3141 63 HOH HOH . 
F 3 HOH B 42 3142 62 HOH HOH . 
F 3 HOH B 43 3143 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 R78 . . . C 2 13.527 70.82 34.91 1 38.93 ? N1 R78 3000 A 1 
HETATM 2 N N3 R78 . . . C 2 11.945 69.413 38.403 1 35.43 ? N3 R78 3000 A 1 
HETATM 3 C C4 R78 . . . C 2 12.266 70.351 34.864 1 38.78 ? C4 R78 3000 A 1 
HETATM 4 C C5 R78 . . . C 2 10.608 68.808 38.399 1 34.48 ? C5 R78 3000 A 1 
HETATM 5 C C6 R78 . . . C 2 9.782 68.934 37.161 1 33.57 ? C6 R78 3000 A 1 
HETATM 6 C C7 R78 . . . C 2 16.568 71.395 36.78 1 49.29 ? C7 R78 3000 A 1 
HETATM 7 C C8 R78 . . . C 2 12.448 69.809 39.732 1 40.06 ? C8 R78 3000 A 1 
HETATM 8 C C10 R78 . . . C 2 11.847 66.746 37.662 1 32.2 ? C10 R78 3000 A 1 
HETATM 9 C C13 R78 . . . C 2 14.624 69.569 40.871 1 40.12 ? C13 R78 3000 A 1 
HETATM 10 C C15 R78 . . . C 2 13.005 71.219 39.92 1 40.3 ? C15 R78 3000 A 1 
HETATM 11 C C17 R78 . . . C 2 18.855 72.137 37.449 1 46.58 ? C17 R78 3000 A 1 
HETATM 12 C C20 R78 . . . C 2 16.523 70.717 38.001 1 49.77 ? C20 R78 3000 A 1 
HETATM 13 C C21 R78 . . . C 2 19.901 71.448 39.651 1 54.33 ? C21 R78 3000 A 1 
HETATM 14 C C22 R78 . . . C 2 20.881 70.806 41.825 1 57.23 ? C22 R78 3000 A 1 
HETATM 15 C C24 R78 . . . C 2 21.366 70.578 44.317 1 59.38 ? C24 R78 3000 A 1 
HETATM 16 C C28 R78 . . . C 2 22.78 69.374 42.716 1 59.46 ? C28 R78 3000 A 1 
HETATM 17 O O2 R78 . . . C 2 20.948 71.965 39.295 1 60.1 ? O2 R78 3000 A 1 
HETATM 18 N N6 R78 . . . C 2 19.8 70.872 40.857 1 54.46 ? N6 R78 3000 A 1 
HETATM 19 C C29 R78 . . . C 2 21.747 69.563 41.602 1 59.14 ? C29 R78 3000 A 1 
HETATM 20 N N7 R78 . . . C 2 22.13 69.34 44.05 1 62.71 ? N7 R78 3000 A 1 
HETATM 21 C C30 R78 . . . C 2 23.137 69.141 45.104 1 62.48 ? C30 R78 3000 A 1 
HETATM 22 C C23 R78 . . . C 2 20.294 70.791 43.242 1 58.43 ? C23 R78 3000 A 1 
HETATM 23 C C18 R78 . . . C 2 18.749 71.442 38.654 1 51.77 ? C18 R78 3000 A 1 
HETATM 24 C C16 R78 . . . C 2 17.834 72.158 36.505 1 47.61 ? C16 R78 3000 A 1 
HETATM 25 O O3 R78 . . . C 2 18.119 72.895 35.382 1 55.44 ? O3 R78 3000 A 1 
HETATM 26 C C31 R78 . . . C 2 17.22 73.49 34.434 1 60.68 ? C31 R78 3000 A 1 
HETATM 27 C C19 R78 . . . C 2 17.579 70.733 38.913 1 48.73 ? C19 R78 3000 A 1 
HETATM 28 N N5 R78 . . . C 2 15.514 71.391 35.904 1 42.51 ? N5 R78 3000 A 1 
HETATM 29 C C1 R78 . . . C 2 14.255 70.896 36.044 1 38.94 ? C1 R78 3000 A 1 
HETATM 30 N N2 R78 . . . C 2 13.706 70.438 37.197 1 37.95 ? N2 R78 3000 A 1 
HETATM 31 C C2 R78 . . . C 2 12.439 69.975 37.239 1 34.73 ? C2 R78 3000 A 1 
HETATM 32 C C14 R78 . . . C 2 14.359 71.052 40.605 1 40.99 ? C14 R78 3000 A 1 
HETATM 33 C C12 R78 . . . C 2 13.605 68.829 40.014 1 39.67 ? C12 R78 3000 A 1 
HETATM 34 C C9 R78 . . . C 2 10.871 67.328 38.654 1 32.16 ? C9 R78 3000 A 1 
HETATM 35 O O1 R78 . . . C 2 8.6 68.606 37.237 1 29.8 ? O1 R78 3000 A 1 
HETATM 36 N N4 R78 . . . C 2 10.319 69.404 36.032 1 36.32 ? N4 R78 3000 A 1 
HETATM 37 C C11 R78 . . . C 2 9.486 69.546 34.822 1 36.52 ? C11 R78 3000 A 1 
HETATM 38 C C3 R78 . . . C 2 11.646 69.862 36.006 1 35.71 ? C3 R78 3000 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           38 
#