data_6MFD
#
_model_server_result.job_id            6SBBn2QoizGGWyxjaZGFVA 
_model_server_result.datetime_utc      '2024-11-16 22:35:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":801}' 
#
_entry.id    6MFD 
#
_exptl.entry_id    6MFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOBUTYRYL-COENZYME A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MFD 
_cell.length_a            134.427 
_cell.length_b            145.473 
_cell.length_c            77.246 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,H 1 1 
B,D,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                CO6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOBUTYRYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     IB-CO6 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A CO6 sing 76 n y 
N1A C6A CO6 doub 77 n y 
C2A N3A CO6 doub 78 n y 
C2A H2 CO6 sing 79 n n 
N3A C4A CO6 sing 80 n y 
C4A C5A CO6 doub 81 n y 
C4A N9A CO6 sing 82 n y 
C5A C6A CO6 sing 83 n y 
C5A N7A CO6 sing 84 n y 
C6A N6A CO6 sing 85 n n 
N6A HN61 CO6 sing 86 n n 
N6A HN62 CO6 sing 87 n n 
N7A C8A CO6 doub 88 n y 
C8A N9A CO6 sing 89 n y 
C8A H8 CO6 sing 90 n n 
N9A C1B CO6 sing 91 n n 
C1B C2B CO6 sing 92 n n 
C1B O4B CO6 sing 93 n n 
C1B H1' CO6 sing 94 n n 
C2B C3B CO6 sing 95 n n 
C2B O2B CO6 sing 96 n n 
C2B H2' CO6 sing 97 n n 
O2B H1 CO6 sing 98 n n 
C3B C4B CO6 sing 99 n n 
C3B O3B CO6 sing 100 n n 
C3B H3' CO6 sing 101 n n 
O3B P3B CO6 sing 102 n n 
P3B O7A CO6 doub 103 n n 
P3B O8A CO6 sing 104 n n 
P3B O9A CO6 sing 105 n n 
O8A HO8 CO6 sing 106 n n 
O9A HO9 CO6 sing 107 n n 
C4B C5B CO6 sing 108 n n 
C4B O4B CO6 sing 109 n n 
C4B H4' CO6 sing 110 n n 
C5B O5B CO6 sing 111 n n 
C5B "H5'1" CO6 sing 112 n n 
C5B "H5'2" CO6 sing 113 n n 
O5B P1A CO6 sing 114 n n 
P1A O1A CO6 doub 115 n n 
P1A O2A CO6 sing 116 n n 
P1A O3A CO6 sing 117 n n 
O2A HO2 CO6 sing 118 n n 
O3A P2A CO6 sing 119 n n 
P2A O4A CO6 doub 120 n n 
P2A O5A CO6 sing 121 n n 
P2A O6A CO6 sing 122 n n 
O5A HO5 CO6 sing 123 n n 
O6A CCP CO6 sing 124 n n 
CBP CAP CO6 sing 125 n n 
CBP CCP CO6 sing 126 n n 
CBP CDP CO6 sing 127 n n 
CBP CEP CO6 sing 128 n n 
CCP H121 CO6 sing 129 n n 
CCP H122 CO6 sing 130 n n 
CDP H131 CO6 sing 131 n n 
CDP H132 CO6 sing 132 n n 
CDP H133 CO6 sing 133 n n 
CEP H141 CO6 sing 134 n n 
CEP H142 CO6 sing 135 n n 
CEP H143 CO6 sing 136 n n 
CAP C9P CO6 sing 137 n n 
CAP OAP CO6 sing 138 n n 
CAP H10 CO6 sing 139 n n 
OAP H3 CO6 sing 140 n n 
C9P O9P CO6 doub 141 n n 
C9P N8P CO6 sing 142 n n 
N8P C7P CO6 sing 143 n n 
N8P HN8 CO6 sing 144 n n 
C7P C6P CO6 sing 145 n n 
C7P H71 CO6 sing 146 n n 
C7P H72 CO6 sing 147 n n 
C6P C5P CO6 sing 148 n n 
C6P H61 CO6 sing 149 n n 
C6P H62 CO6 sing 150 n n 
C5P N4P CO6 sing 151 n n 
C5P O5P CO6 doub 152 n n 
N4P C3P CO6 sing 153 n n 
N4P HN4 CO6 sing 154 n n 
C3P C2P CO6 sing 155 n n 
C3P H31 CO6 sing 156 n n 
C3P H32 CO6 sing 157 n n 
C2P S1P CO6 sing 158 n n 
C2P H21 CO6 sing 159 n n 
C2P H22 CO6 sing 160 n n 
S1P C1 CO6 sing 161 n n 
O1 C1 CO6 doub 162 n n 
C1 C3 CO6 sing 163 n n 
C2 C3 CO6 sing 164 n n 
C2 H11 CO6 sing 165 n n 
C2 H12 CO6 sing 166 n n 
C2 H13 CO6 sing 167 n n 
C3 C4 CO6 sing 168 n n 
C3 H4 CO6 sing 169 n n 
C4 H41 CO6 sing 170 n n 
C4 H42 CO6 sing 171 n n 
C4 H43 CO6 sing 172 n n 
#
_atom_sites.entry_id                     6MFD 
_atom_sites.fract_transf_matrix[1][1]    0.007439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO6 B 1 801 700 CO6 CO6 . 
D 2 CO6 A 1 801 700 CO6 CO6 . 
E 3 ACT A 1 802 1 ACT ACT . 
F 4 GOL A 1 803 1 GOL GOL . 
G 4 GOL A 1 804 2 GOL GOL . 
H 5 HOH B 1 901 6 HOH HOH . 
H 5 HOH B 2 902 91 HOH HOH . 
H 5 HOH B 3 903 90 HOH HOH . 
H 5 HOH B 4 904 98 HOH HOH . 
H 5 HOH B 5 905 33 HOH HOH . 
H 5 HOH B 6 906 2 HOH HOH . 
H 5 HOH B 7 907 38 HOH HOH . 
H 5 HOH B 8 908 31 HOH HOH . 
I 5 HOH A 1 901 95 HOH HOH . 
I 5 HOH A 2 902 92 HOH HOH . 
I 5 HOH A 3 903 87 HOH HOH . 
I 5 HOH A 4 904 97 HOH HOH . 
I 5 HOH A 5 905 99 HOH HOH . 
I 5 HOH A 6 906 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A CO6 . . . C 2 13.624 17.034 -31.596 1 202.87 ? N1A CO6 801 B 1 
HETATM 2 C C2A CO6 . . . C 2 14.912 16.852 -31.231 1 190.39 ? C2A CO6 801 B 1 
HETATM 3 N N3A CO6 . . . C 2 15.344 15.615 -30.866 1 201.77 ? N3A CO6 801 B 1 
HETATM 4 C C4A CO6 . . . C 2 14.486 14.564 -30.865 1 207.64 ? C4A CO6 801 B 1 
HETATM 5 C C5A CO6 . . . C 2 13.207 14.735 -31.225 1 208.58 ? C5A CO6 801 B 1 
HETATM 6 C C6A CO6 . . . C 2 12.775 15.995 -31.596 1 202.54 ? C6A CO6 801 B 1 
HETATM 7 N N6A CO6 . . . C 2 11.5 16.62 -32.049 1 190.51 ? N6A CO6 801 B 1 
HETATM 8 N N7A CO6 . . . C 2 12.584 13.528 -31.133 1 213.53 ? N7A CO6 801 B 1 
HETATM 9 C C8A CO6 . . . C 2 13.487 12.618 -30.716 1 207.9 ? C8A CO6 801 B 1 
HETATM 10 N N9A CO6 . . . C 2 14.659 13.259 -30.549 1 202.53 ? N9A CO6 801 B 1 
HETATM 11 C C1B CO6 . . . C 2 15.785 12.647 -30.14 1 186.11 ? C1B CO6 801 B 1 
HETATM 12 C C2B CO6 . . . C 2 15.813 12.397 -28.618 1 166.05 ? C2B CO6 801 B 1 
HETATM 13 O O2B CO6 . . . C 2 16.013 13.668 -27.866 1 151.16 ? O2B CO6 801 B 1 
HETATM 14 C C3B CO6 . . . C 2 16.889 11.643 -28.546 1 176.29 ? C3B CO6 801 B 1 
HETATM 15 O O3B CO6 . . . C 2 18.044 12.528 -28.679 1 175.57 ? O3B CO6 801 B 1 
HETATM 16 P P3B CO6 . . . C 2 19.615 12.005 -28.314 1 162.99 ? P3B CO6 801 B 1 
HETATM 17 O O7A CO6 . . . C 2 19.902 12.243 -26.842 1 135.37 ? O7A CO6 801 B 1 
HETATM 18 O O8A CO6 . . . C 2 20.602 12.793 -29.151 1 151.18 ? O8A CO6 801 B 1 
HETATM 19 O O9A CO6 . . . C 2 19.763 10.537 -28.629 1 184.35 ? O9A CO6 801 B 1 
HETATM 20 C C4B CO6 . . . C 2 16.792 10.66 -29.846 1 171.06 ? C4B CO6 801 B 1 
HETATM 21 O O4B CO6 . . . C 2 15.914 11.196 -30.674 1 182.73 ? O4B CO6 801 B 1 
HETATM 22 C C5B CO6 . . . C 2 16.379 9.265 -29.456 1 152.47 ? C5B CO6 801 B 1 
HETATM 23 O O5B CO6 . . . C 2 15.231 9.284 -28.609 1 130.34 ? O5B CO6 801 B 1 
HETATM 24 P P1A CO6 . . . C 2 15.139 8.18 -27.38 1 121.11 ? P1A CO6 801 B 1 
HETATM 25 O O1A CO6 . . . C 2 13.835 7.438 -27.481 1 84.67 ? O1A CO6 801 B 1 
HETATM 26 O O2A CO6 . . . C 2 15.205 8.891 -26.064 1 183.19 ? O2A CO6 801 B 1 
HETATM 27 O O3A CO6 . . . C 2 16.396 7.1 -27.486 1 95.38 ? O3A CO6 801 B 1 
HETATM 28 P P2A CO6 . . . C 2 17.845 7.224 -26.712 1 134.43 ? P2A CO6 801 B 1 
HETATM 29 O O4A CO6 . . . C 2 18.726 8.188 -27.458 1 141.35 ? O4A CO6 801 B 1 
HETATM 30 O O5A CO6 . . . C 2 18.493 5.874 -26.719 1 145.3 ? O5A CO6 801 B 1 
HETATM 31 O O6A CO6 . . . C 2 17.656 7.737 -25.154 1 139.3 ? O6A CO6 801 B 1 
HETATM 32 C CBP CO6 . . . C 2 19.103 8.847 -23.473 1 122.88 ? CBP CO6 801 B 1 
HETATM 33 C CCP CO6 . . . C 2 18.227 8.988 -24.766 1 136.27 ? CCP CO6 801 B 1 
HETATM 34 C CDP CO6 . . . C 2 19.134 10.179 -22.754 1 120.37 ? CDP CO6 801 B 1 
HETATM 35 C CEP CO6 . . . C 2 18.468 7.828 -22.544 1 100.75 ? CEP CO6 801 B 1 
HETATM 36 C CAP CO6 . . . C 2 20.519 8.372 -23.857 1 161.58 ? CAP CO6 801 B 1 
HETATM 37 O OAP CO6 . . . C 2 20.622 8.32 -25.226 1 180.9 ? OAP CO6 801 B 1 
HETATM 38 C C9P CO6 . . . C 2 21.644 9.281 -23.312 1 189.13 ? C9P CO6 801 B 1 
HETATM 39 O O9P CO6 . . . C 2 21.992 10.227 -23.92 1 187.75 ? O9P CO6 801 B 1 
HETATM 40 N N8P CO6 . . . C 2 22.306 8.955 -22.047 1 205.69 ? N8P CO6 801 B 1 
HETATM 41 C C7P CO6 . . . C 2 23.394 9.828 -21.534 1 176.58 ? C7P CO6 801 B 1 
HETATM 42 C C6P CO6 . . . C 2 23.254 9.954 -20.022 1 173.71 ? C6P CO6 801 B 1 
HETATM 43 C C5P CO6 . . . C 2 22.066 10.891 -19.72 1 171.07 ? C5P CO6 801 B 1 
HETATM 44 O O5P CO6 . . . C 2 22.25 12.061 -19.631 1 170.11 ? O5P CO6 801 B 1 
HETATM 45 N N4P CO6 . . . C 2 20.724 10.336 -19.551 1 180.88 ? N4P CO6 801 B 1 
HETATM 46 C C3P CO6 . . . C 2 19.579 11.218 -19.269 1 173.95 ? C3P CO6 801 B 1 
HETATM 47 C C2P CO6 . . . C 2 19.692 11.784 -17.823 1 176.11 ? C2P CO6 801 B 1 
HETATM 48 S S1P CO6 . . . C 2 19.014 10.53 -16.632 1 178.09 ? S1P CO6 801 B 1 
HETATM 49 O O1 CO6 . . . C 2 16.87 11.91 -15.962 1 145.19 ? O1 CO6 801 B 1 
HETATM 50 C C1 CO6 . . . C 2 17.827 11.386 -15.514 1 154.09 ? C1 CO6 801 B 1 
HETATM 51 C C2 CO6 . . . C 2 16.782 11.02 -13.255 1 160.5 ? C2 CO6 801 B 1 
HETATM 52 C C3 CO6 . . . C 2 18.09 11.412 -13.98 1 165 ? C3 CO6 801 B 1 
HETATM 53 C C4 CO6 . . . C 2 19.215 10.371 -13.624 1 170.27 ? C4 CO6 801 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           53 
#