data_6MFD
#
_model_server_result.job_id            dLIXdHTD8OXrUjY0l70LAQ 
_model_server_result.datetime_utc      '2025-08-24 18:22:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mfd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":801}' 
#
_entry.id    6MFD 
#
_exptl.entry_id    6MFD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              837.624 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ISOBUTYRYL-COENZYME A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MFD 
_cell.length_a            134.427 
_cell.length_b            145.473 
_cell.length_c            77.246 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MFD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,H 1 1 
B,D,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C25 H42 N7 O17 P3 S' 
_chem_comp.formula_weight    837.624 
_chem_comp.id                CO6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ISOBUTYRYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     IB-CO6 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1A C2A CO6 sing 76 n y 
N1A C6A CO6 doub 77 n y 
C2A N3A CO6 doub 78 n y 
C2A H2 CO6 sing 79 n n 
N3A C4A CO6 sing 80 n y 
C4A C5A CO6 doub 81 n y 
C4A N9A CO6 sing 82 n y 
C5A C6A CO6 sing 83 n y 
C5A N7A CO6 sing 84 n y 
C6A N6A CO6 sing 85 n n 
N6A HN61 CO6 sing 86 n n 
N6A HN62 CO6 sing 87 n n 
N7A C8A CO6 doub 88 n y 
C8A N9A CO6 sing 89 n y 
C8A H8 CO6 sing 90 n n 
N9A C1B CO6 sing 91 n n 
C1B C2B CO6 sing 92 n n 
C1B O4B CO6 sing 93 n n 
C1B H1' CO6 sing 94 n n 
C2B C3B CO6 sing 95 n n 
C2B O2B CO6 sing 96 n n 
C2B H2' CO6 sing 97 n n 
O2B H1 CO6 sing 98 n n 
C3B C4B CO6 sing 99 n n 
C3B O3B CO6 sing 100 n n 
C3B H3' CO6 sing 101 n n 
O3B P3B CO6 sing 102 n n 
P3B O7A CO6 doub 103 n n 
P3B O8A CO6 sing 104 n n 
P3B O9A CO6 sing 105 n n 
O8A HO8 CO6 sing 106 n n 
O9A HO9 CO6 sing 107 n n 
C4B C5B CO6 sing 108 n n 
C4B O4B CO6 sing 109 n n 
C4B H4' CO6 sing 110 n n 
C5B O5B CO6 sing 111 n n 
C5B "H5'1" CO6 sing 112 n n 
C5B "H5'2" CO6 sing 113 n n 
O5B P1A CO6 sing 114 n n 
P1A O1A CO6 doub 115 n n 
P1A O2A CO6 sing 116 n n 
P1A O3A CO6 sing 117 n n 
O2A HO2 CO6 sing 118 n n 
O3A P2A CO6 sing 119 n n 
P2A O4A CO6 doub 120 n n 
P2A O5A CO6 sing 121 n n 
P2A O6A CO6 sing 122 n n 
O5A HO5 CO6 sing 123 n n 
O6A CCP CO6 sing 124 n n 
CBP CAP CO6 sing 125 n n 
CBP CCP CO6 sing 126 n n 
CBP CDP CO6 sing 127 n n 
CBP CEP CO6 sing 128 n n 
CCP H121 CO6 sing 129 n n 
CCP H122 CO6 sing 130 n n 
CDP H131 CO6 sing 131 n n 
CDP H132 CO6 sing 132 n n 
CDP H133 CO6 sing 133 n n 
CEP H141 CO6 sing 134 n n 
CEP H142 CO6 sing 135 n n 
CEP H143 CO6 sing 136 n n 
CAP C9P CO6 sing 137 n n 
CAP OAP CO6 sing 138 n n 
CAP H10 CO6 sing 139 n n 
OAP H3 CO6 sing 140 n n 
C9P O9P CO6 doub 141 n n 
C9P N8P CO6 sing 142 n n 
N8P C7P CO6 sing 143 n n 
N8P HN8 CO6 sing 144 n n 
C7P C6P CO6 sing 145 n n 
C7P H71 CO6 sing 146 n n 
C7P H72 CO6 sing 147 n n 
C6P C5P CO6 sing 148 n n 
C6P H61 CO6 sing 149 n n 
C6P H62 CO6 sing 150 n n 
C5P N4P CO6 sing 151 n n 
C5P O5P CO6 doub 152 n n 
N4P C3P CO6 sing 153 n n 
N4P HN4 CO6 sing 154 n n 
C3P C2P CO6 sing 155 n n 
C3P H31 CO6 sing 156 n n 
C3P H32 CO6 sing 157 n n 
C2P S1P CO6 sing 158 n n 
C2P H21 CO6 sing 159 n n 
C2P H22 CO6 sing 160 n n 
S1P C1 CO6 sing 161 n n 
O1 C1 CO6 doub 162 n n 
C1 C3 CO6 sing 163 n n 
C2 C3 CO6 sing 164 n n 
C2 H11 CO6 sing 165 n n 
C2 H12 CO6 sing 166 n n 
C2 H13 CO6 sing 167 n n 
C3 C4 CO6 sing 168 n n 
C3 H4 CO6 sing 169 n n 
C4 H41 CO6 sing 170 n n 
C4 H42 CO6 sing 171 n n 
C4 H43 CO6 sing 172 n n 
#
_atom_sites.entry_id                     6MFD 
_atom_sites.fract_transf_matrix[1][1]    0.007439 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006874 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO6 B 1 801 700 CO6 CO6 . 
D 2 CO6 A 1 801 700 CO6 CO6 . 
E 3 ACT A 1 802 1 ACT ACT . 
F 4 GOL A 1 803 1 GOL GOL . 
G 4 GOL A 1 804 2 GOL GOL . 
H 5 HOH B 1 901 6 HOH HOH . 
H 5 HOH B 2 902 91 HOH HOH . 
H 5 HOH B 3 903 90 HOH HOH . 
H 5 HOH B 4 904 98 HOH HOH . 
H 5 HOH B 5 905 33 HOH HOH . 
H 5 HOH B 6 906 2 HOH HOH . 
H 5 HOH B 7 907 38 HOH HOH . 
H 5 HOH B 8 908 31 HOH HOH . 
I 5 HOH A 1 901 95 HOH HOH . 
I 5 HOH A 2 902 92 HOH HOH . 
I 5 HOH A 3 903 87 HOH HOH . 
I 5 HOH A 4 904 97 HOH HOH . 
I 5 HOH A 5 905 99 HOH HOH . 
I 5 HOH A 6 906 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1A CO6 . . . D 2 18.206 -32.896 -25.198 1 159.65 ? N1A CO6 801 A 1 
HETATM 2 C C2A CO6 . . . D 2 19.481 -32.702 -24.8 1 145.27 ? C2A CO6 801 A 1 
HETATM 3 N N3A CO6 . . . D 2 20.19 -33.73 -24.261 1 153.32 ? N3A CO6 801 A 1 
HETATM 4 C C4A CO6 . . . D 2 19.634 -34.963 -24.112 1 177.98 ? C4A CO6 801 A 1 
HETATM 5 C C5A CO6 . . . D 2 18.364 -35.152 -24.51 1 181.58 ? C5A CO6 801 A 1 
HETATM 6 C C6A CO6 . . . D 2 17.647 -34.106 -25.057 1 173.24 ? C6A CO6 801 A 1 
HETATM 7 N N6A CO6 . . . D 2 16.275 -33.901 -25.601 1 167.86 ? N6A CO6 801 A 1 
HETATM 8 N N7A CO6 . . . D 2 18.027 -36.444 -24.267 1 176.96 ? N7A CO6 801 A 1 
HETATM 9 C C8A CO6 . . . D 2 19.093 -37.051 -23.719 1 177.36 ? C8A CO6 801 A 1 
HETATM 10 N N9A CO6 . . . D 2 20.091 -36.151 -23.615 1 182.46 ? N9A CO6 801 A 1 
HETATM 11 C C1B CO6 . . . D 2 21.275 -36.545 -23.087 1 178.03 ? C1B CO6 801 A 1 
HETATM 12 C C2B CO6 . . . D 2 22.193 -35.397 -22.599 1 163.43 ? C2B CO6 801 A 1 
HETATM 13 O O2B CO6 . . . D 2 23.053 -34.911 -23.717 1 147.89 ? O2B CO6 801 A 1 
HETATM 14 C C3B CO6 . . . D 2 22.935 -35.962 -21.666 1 164.1 ? C3B CO6 801 A 1 
HETATM 15 O O3B CO6 . . . D 2 24.103 -36.591 -22.281 1 163.93 ? O3B CO6 801 A 1 
HETATM 16 P P3B CO6 . . . D 2 25.055 -37.682 -21.393 1 161.39 ? P3B CO6 801 A 1 
HETATM 17 O O7A CO6 . . . D 2 25.049 -37.297 -19.924 1 191.86 ? O7A CO6 801 A 1 
HETATM 18 O O8A CO6 . . . D 2 24.509 -39.087 -21.551 1 127.14 ? O8A CO6 801 A 1 
HETATM 19 O O9A CO6 . . . D 2 26.473 -37.639 -21.906 1 132.18 ? O9A CO6 801 A 1 
HETATM 20 C C4B CO6 . . . D 2 21.988 -37.083 -20.959 1 169.86 ? C4B CO6 801 A 1 
HETATM 21 O O4B CO6 . . . D 2 21.006 -37.366 -21.792 1 177.5 ? O4B CO6 801 A 1 
HETATM 22 C C5B CO6 . . . D 2 21.448 -36.58 -19.643 1 168.89 ? C5B CO6 801 A 1 
HETATM 23 O O5B CO6 . . . D 2 20.656 -35.403 -19.816 1 152.12 ? O5B CO6 801 A 1 
HETATM 24 P P1A CO6 . . . D 2 20.696 -34.227 -18.649 1 100.76 ? P1A CO6 801 A 1 
HETATM 25 O O1A CO6 . . . D 2 20.182 -34.784 -17.35 1 83.27 ? O1A CO6 801 A 1 
HETATM 26 O O2A CO6 . . . D 2 19.823 -33.086 -19.069 1 82.72 ? O2A CO6 801 A 1 
HETATM 27 O O3A CO6 . . . D 2 22.254 -33.687 -18.443 1 61.68 ? O3A CO6 801 A 1 
HETATM 28 P P2A CO6 . . . D 2 23.255 -34.179 -17.232 1 81.23 ? P2A CO6 801 A 1 
HETATM 29 O O4A CO6 . . . D 2 22.585 -33.945 -15.906 1 80.61 ? O4A CO6 801 A 1 
HETATM 30 O O5A CO6 . . . D 2 23.557 -35.639 -17.385 1 101.6 ? O5A CO6 801 A 1 
HETATM 31 O O6A CO6 . . . D 2 24.664 -33.33 -17.296 1 74.42 ? O6A CO6 801 A 1 
HETATM 32 C CBP CO6 . . . D 2 26.834 -33.051 -18.399 1 70.58 ? CBP CO6 801 A 1 
HETATM 33 C CCP CO6 . . . D 2 25.278 -33.115 -18.563 1 55.89 ? CCP CO6 801 A 1 
HETATM 34 C CDP CO6 . . . D 2 27.465 -33.017 -19.774 1 64.12 ? CDP CO6 801 A 1 
HETATM 35 C CEP CO6 . . . D 2 27.2 -31.783 -17.647 1 79.04 ? CEP CO6 801 A 1 
HETATM 36 C CAP CO6 . . . D 2 27.317 -34.274 -17.601 1 68.1 ? CAP CO6 801 A 1 
HETATM 37 O OAP CO6 . . . D 2 26.799 -35.42 -18.155 1 92.52 ? OAP CO6 801 A 1 
HETATM 38 C C9P CO6 . . . D 2 28.859 -34.369 -17.561 1 83.16 ? C9P CO6 801 A 1 
HETATM 39 O O9P CO6 . . . D 2 29.434 -33.892 -16.653 1 73.39 ? O9P CO6 801 A 1 
HETATM 40 N N8P CO6 . . . D 2 29.587 -35.065 -18.634 1 124.99 ? N8P CO6 801 A 1 
HETATM 41 C C7P CO6 . . . D 2 31.07 -35.222 -18.674 1 129.19 ? C7P CO6 801 A 1 
HETATM 42 C C6P CO6 . . . D 2 31.815 -33.899 -18.515 1 119.45 ? C6P CO6 801 A 1 
HETATM 43 C C5P CO6 . . . D 2 31.625 -32.995 -19.752 1 110.37 ? C5P CO6 801 A 1 
HETATM 44 O O5P CO6 . . . D 2 32.259 -33.19 -20.739 1 108.5 ? O5P CO6 801 A 1 
HETATM 45 N N4P CO6 . . . D 2 30.67 -31.892 -19.699 1 99.17 ? N4P CO6 801 A 1 
HETATM 46 C C3P CO6 . . . D 2 30.489 -31.017 -20.868 1 101.58 ? C3P CO6 801 A 1 
HETATM 47 C C2P CO6 . . . D 2 31.27 -29.695 -20.606 1 99.67 ? C2P CO6 801 A 1 
HETATM 48 S S1P CO6 . . . D 2 30.937 -28.47 -21.966 1 111.12 ? S1P CO6 801 A 1 
HETATM 49 O O1 CO6 . . . D 2 32.085 -26.129 -22.406 1 79.64 ? O1 CO6 801 A 1 
HETATM 50 C C1 CO6 . . . D 2 32.296 -27.22 -22.007 1 108.89 ? C1 CO6 801 A 1 
HETATM 51 C C2 CO6 . . . D 2 34.304 -28.73 -22.41 1 93.02 ? C2 CO6 801 A 1 
HETATM 52 C C3 CO6 . . . D 2 33.726 -27.604 -21.516 1 99.92 ? C3 CO6 801 A 1 
HETATM 53 C C4 CO6 . . . D 2 34.662 -26.342 -21.59 1 75.98 ? C4 CO6 801 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           53 
#