data_6MFD # _model_server_result.job_id Q_qCSQLoyATwGZam64TZbg _model_server_result.datetime_utc '2024-11-16 22:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":804}' # _entry.id 6MFD # _exptl.entry_id 6MFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MFD _cell.length_a 134.427 _cell.length_b 145.473 _cell.length_c 77.246 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,H 1 1 B,D,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 232 n n C1 C2 GOL sing 233 n n C1 H11 GOL sing 234 n n C1 H12 GOL sing 235 n n O1 HO1 GOL sing 236 n n C2 O2 GOL sing 237 n n C2 C3 GOL sing 238 n n C2 H2 GOL sing 239 n n O2 HO2 GOL sing 240 n n C3 O3 GOL sing 241 n n C3 H31 GOL sing 242 n n C3 H32 GOL sing 243 n n O3 HO3 GOL sing 244 n n # _atom_sites.entry_id 6MFD _atom_sites.fract_transf_matrix[1][1] 0.007439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO6 B 1 801 700 CO6 CO6 . D 2 CO6 A 1 801 700 CO6 CO6 . E 3 ACT A 1 802 1 ACT ACT . F 4 GOL A 1 803 1 GOL GOL . G 4 GOL A 1 804 2 GOL GOL . H 5 HOH B 1 901 6 HOH HOH . H 5 HOH B 2 902 91 HOH HOH . H 5 HOH B 3 903 90 HOH HOH . H 5 HOH B 4 904 98 HOH HOH . H 5 HOH B 5 905 33 HOH HOH . H 5 HOH B 6 906 2 HOH HOH . H 5 HOH B 7 907 38 HOH HOH . H 5 HOH B 8 908 31 HOH HOH . I 5 HOH A 1 901 95 HOH HOH . I 5 HOH A 2 902 92 HOH HOH . I 5 HOH A 3 903 87 HOH HOH . I 5 HOH A 4 904 97 HOH HOH . I 5 HOH A 5 905 99 HOH HOH . I 5 HOH A 6 906 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 36.913 -27.458 -16.966 1 86.35 ? C1 GOL 804 A 1 HETATM 2 O O1 GOL . . . G 4 35.908 -28.094 -17.696 1 59.11 ? O1 GOL 804 A 1 HETATM 3 C C2 GOL . . . G 4 38.158 -28.376 -17.01 1 85.75 ? C2 GOL 804 A 1 HETATM 4 O O2 GOL . . . G 4 37.907 -29.56 -17.686 1 101.33 ? O2 GOL 804 A 1 HETATM 5 C C3 GOL . . . G 4 39.256 -27.534 -17.697 1 82.81 ? C3 GOL 804 A 1 HETATM 6 O O3 GOL . . . G 4 40.468 -28.178 -17.452 1 83.46 ? O3 GOL 804 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #