data_6MFH # _model_server_result.job_id kig8ivmh4qRSHK8LknrARg _model_server_result.datetime_utc '2025-02-05 03:58:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mfh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6MFH # _exptl.entry_id 6MFH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MFH _cell.length_a 197.098 _cell.length_b 197.098 _cell.length_c 197.098 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MFH _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 14_555 -y+3/4,-x+3/4,-z+3/4 0 -1 0 -1 0 0 0 0 -1 147.8235 147.8235 147.8235 5 'crystal symmetry operation' 19_555 -x+3/4,-z+3/4,-y+3/4 -1 0 0 0 0 -1 0 -1 0 147.8235 147.8235 147.8235 6 'crystal symmetry operation' 24_555 -z+3/4,-y+3/4,-x+3/4 0 0 -1 0 -1 0 -1 0 0 147.8235 147.8235 147.8235 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 83 n n S1 HS1 DTT sing 84 n n C1 C2 DTT sing 85 n n C1 H11 DTT sing 86 n n C1 H12 DTT sing 87 n n C2 O2 DTT sing 88 n n C2 C3 DTT sing 89 n n C2 H2 DTT sing 90 n n O2 HO2 DTT sing 91 n n C3 O3 DTT sing 92 n n C3 C4 DTT sing 93 n n C3 H3 DTT sing 94 n n O3 HO3 DTT sing 95 n n C4 S4 DTT sing 96 n n C4 H41 DTT sing 97 n n C4 H42 DTT sing 98 n n S4 HS2 DTT sing 99 n n # _atom_sites.entry_id 6MFH _atom_sites.fract_transf_matrix[1][1] 0.005074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DTT A 1 301 1 DTT DTT . C 2 DTT A 1 302 2 DTT DTT . D 2 DTT A 1 303 3 DTT DTT . E 3 PO4 A 1 304 1 PO4 PO4 . F 3 PO4 A 1 305 2 PO4 PO4 . G 4 HOH A 1 401 144 HOH HOH . G 4 HOH A 2 402 72 HOH HOH . G 4 HOH A 3 403 131 HOH HOH . G 4 HOH A 4 404 23 HOH HOH . G 4 HOH A 5 405 172 HOH HOH . G 4 HOH A 6 406 108 HOH HOH . G 4 HOH A 7 407 81 HOH HOH . G 4 HOH A 8 408 113 HOH HOH . G 4 HOH A 9 409 112 HOH HOH . G 4 HOH A 10 410 129 HOH HOH . G 4 HOH A 11 411 231 HOH HOH . G 4 HOH A 12 412 150 HOH HOH . G 4 HOH A 13 413 38 HOH HOH . G 4 HOH A 14 414 163 HOH HOH . G 4 HOH A 15 415 24 HOH HOH . G 4 HOH A 16 416 161 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 68 HOH HOH . G 4 HOH A 19 419 65 HOH HOH . G 4 HOH A 20 420 171 HOH HOH . G 4 HOH A 21 421 42 HOH HOH . G 4 HOH A 22 422 91 HOH HOH . G 4 HOH A 23 423 118 HOH HOH . G 4 HOH A 24 424 50 HOH HOH . G 4 HOH A 25 425 234 HOH HOH . G 4 HOH A 26 426 2 HOH HOH . G 4 HOH A 27 427 120 HOH HOH . G 4 HOH A 28 428 101 HOH HOH . G 4 HOH A 29 429 85 HOH HOH . G 4 HOH A 30 430 1 HOH HOH . G 4 HOH A 31 431 39 HOH HOH . G 4 HOH A 32 432 52 HOH HOH . G 4 HOH A 33 433 5 HOH HOH . G 4 HOH A 34 434 48 HOH HOH . G 4 HOH A 35 435 46 HOH HOH . G 4 HOH A 36 436 20 HOH HOH . G 4 HOH A 37 437 27 HOH HOH . G 4 HOH A 38 438 57 HOH HOH . G 4 HOH A 39 439 4 HOH HOH . G 4 HOH A 40 440 56 HOH HOH . G 4 HOH A 41 441 119 HOH HOH . G 4 HOH A 42 442 11 HOH HOH . G 4 HOH A 43 443 12 HOH HOH . G 4 HOH A 44 444 62 HOH HOH . G 4 HOH A 45 445 111 HOH HOH . G 4 HOH A 46 446 28 HOH HOH . G 4 HOH A 47 447 126 HOH HOH . G 4 HOH A 48 448 173 HOH HOH . G 4 HOH A 49 449 157 HOH HOH . G 4 HOH A 50 450 146 HOH HOH . G 4 HOH A 51 451 188 HOH HOH . G 4 HOH A 52 452 210 HOH HOH . G 4 HOH A 53 453 140 HOH HOH . G 4 HOH A 54 454 10 HOH HOH . G 4 HOH A 55 455 133 HOH HOH . G 4 HOH A 56 456 33 HOH HOH . G 4 HOH A 57 457 6 HOH HOH . G 4 HOH A 58 458 121 HOH HOH . G 4 HOH A 59 459 71 HOH HOH . G 4 HOH A 60 460 15 HOH HOH . G 4 HOH A 61 461 34 HOH HOH . G 4 HOH A 62 462 21 HOH HOH . G 4 HOH A 63 463 49 HOH HOH . G 4 HOH A 64 464 196 HOH HOH . G 4 HOH A 65 465 167 HOH HOH . G 4 HOH A 66 466 18 HOH HOH . G 4 HOH A 67 467 9 HOH HOH . G 4 HOH A 68 468 17 HOH HOH . G 4 HOH A 69 469 122 HOH HOH . G 4 HOH A 70 470 147 HOH HOH . G 4 HOH A 71 471 30 HOH HOH . G 4 HOH A 72 472 67 HOH HOH . G 4 HOH A 73 473 141 HOH HOH . G 4 HOH A 74 474 55 HOH HOH . G 4 HOH A 75 475 26 HOH HOH . G 4 HOH A 76 476 104 HOH HOH . G 4 HOH A 77 477 114 HOH HOH . G 4 HOH A 78 478 51 HOH HOH . G 4 HOH A 79 479 61 HOH HOH . G 4 HOH A 80 480 109 HOH HOH . G 4 HOH A 81 481 73 HOH HOH . G 4 HOH A 82 482 98 HOH HOH . G 4 HOH A 83 483 83 HOH HOH . G 4 HOH A 84 484 168 HOH HOH . G 4 HOH A 85 485 87 HOH HOH . G 4 HOH A 86 486 8 HOH HOH . G 4 HOH A 87 487 78 HOH HOH . G 4 HOH A 88 488 47 HOH HOH . G 4 HOH A 89 489 130 HOH HOH . G 4 HOH A 90 490 54 HOH HOH . G 4 HOH A 91 491 151 HOH HOH . G 4 HOH A 92 492 135 HOH HOH . G 4 HOH A 93 493 3 HOH HOH . G 4 HOH A 94 494 53 HOH HOH . G 4 HOH A 95 495 37 HOH HOH . G 4 HOH A 96 496 16 HOH HOH . G 4 HOH A 97 497 31 HOH HOH . G 4 HOH A 98 498 64 HOH HOH . G 4 HOH A 99 499 7 HOH HOH . G 4 HOH A 100 500 41 HOH HOH . G 4 HOH A 101 501 187 HOH HOH . G 4 HOH A 102 502 156 HOH HOH . G 4 HOH A 103 503 149 HOH HOH . G 4 HOH A 104 504 233 HOH HOH . G 4 HOH A 105 505 88 HOH HOH . G 4 HOH A 106 506 25 HOH HOH . G 4 HOH A 107 507 13 HOH HOH . G 4 HOH A 108 508 106 HOH HOH . G 4 HOH A 109 509 102 HOH HOH . G 4 HOH A 110 510 36 HOH HOH . G 4 HOH A 111 511 70 HOH HOH . G 4 HOH A 112 512 44 HOH HOH . G 4 HOH A 113 513 221 HOH HOH . G 4 HOH A 114 514 128 HOH HOH . G 4 HOH A 115 515 80 HOH HOH . G 4 HOH A 116 516 35 HOH HOH . G 4 HOH A 117 517 19 HOH HOH . G 4 HOH A 118 518 45 HOH HOH . G 4 HOH A 119 519 14 HOH HOH . G 4 HOH A 120 520 189 HOH HOH . G 4 HOH A 121 521 159 HOH HOH . G 4 HOH A 122 522 154 HOH HOH . G 4 HOH A 123 523 29 HOH HOH . G 4 HOH A 124 524 117 HOH HOH . G 4 HOH A 125 525 137 HOH HOH . G 4 HOH A 126 526 107 HOH HOH . G 4 HOH A 127 527 76 HOH HOH . G 4 HOH A 128 528 75 HOH HOH . G 4 HOH A 129 529 204 HOH HOH . G 4 HOH A 130 530 153 HOH HOH . G 4 HOH A 131 531 63 HOH HOH . G 4 HOH A 132 532 138 HOH HOH . G 4 HOH A 133 533 202 HOH HOH . G 4 HOH A 134 534 123 HOH HOH . G 4 HOH A 135 535 40 HOH HOH . G 4 HOH A 136 536 32 HOH HOH . G 4 HOH A 137 537 134 HOH HOH . G 4 HOH A 138 538 239 HOH HOH . G 4 HOH A 139 539 66 HOH HOH . G 4 HOH A 140 540 105 HOH HOH . G 4 HOH A 141 541 193 HOH HOH . G 4 HOH A 142 542 100 HOH HOH . G 4 HOH A 143 543 110 HOH HOH . G 4 HOH A 144 544 177 HOH HOH . G 4 HOH A 145 545 74 HOH HOH . G 4 HOH A 146 546 58 HOH HOH . G 4 HOH A 147 547 225 HOH HOH . G 4 HOH A 148 548 220 HOH HOH . G 4 HOH A 149 549 90 HOH HOH . G 4 HOH A 150 550 245 HOH HOH . G 4 HOH A 151 551 124 HOH HOH . G 4 HOH A 152 552 158 HOH HOH . G 4 HOH A 153 553 115 HOH HOH . G 4 HOH A 154 554 192 HOH HOH . G 4 HOH A 155 555 235 HOH HOH . G 4 HOH A 156 556 218 HOH HOH . G 4 HOH A 157 557 95 HOH HOH . G 4 HOH A 158 558 213 HOH HOH . G 4 HOH A 159 559 99 HOH HOH . G 4 HOH A 160 560 201 HOH HOH . G 4 HOH A 161 561 86 HOH HOH . G 4 HOH A 162 562 232 HOH HOH . G 4 HOH A 163 563 59 HOH HOH . G 4 HOH A 164 564 237 HOH HOH . G 4 HOH A 165 565 165 HOH HOH . G 4 HOH A 166 566 191 HOH HOH . G 4 HOH A 167 567 179 HOH HOH . G 4 HOH A 168 568 190 HOH HOH . G 4 HOH A 169 569 216 HOH HOH . G 4 HOH A 170 570 230 HOH HOH . G 4 HOH A 171 571 226 HOH HOH . G 4 HOH A 172 572 208 HOH HOH . G 4 HOH A 173 573 184 HOH HOH . G 4 HOH A 174 574 200 HOH HOH . G 4 HOH A 175 575 178 HOH HOH . G 4 HOH A 176 576 152 HOH HOH . G 4 HOH A 177 577 142 HOH HOH . G 4 HOH A 178 578 242 HOH HOH . G 4 HOH A 179 579 77 HOH HOH . G 4 HOH A 180 580 43 HOH HOH . G 4 HOH A 181 581 82 HOH HOH . G 4 HOH A 182 582 166 HOH HOH . G 4 HOH A 183 583 195 HOH HOH . G 4 HOH A 184 584 79 HOH HOH . G 4 HOH A 185 585 219 HOH HOH . G 4 HOH A 186 586 125 HOH HOH . G 4 HOH A 187 587 212 HOH HOH . G 4 HOH A 188 588 241 HOH HOH . G 4 HOH A 189 589 143 HOH HOH . G 4 HOH A 190 590 155 HOH HOH . G 4 HOH A 191 591 180 HOH HOH . G 4 HOH A 192 592 96 HOH HOH . G 4 HOH A 193 593 69 HOH HOH . G 4 HOH A 194 594 186 HOH HOH . G 4 HOH A 195 595 185 HOH HOH . G 4 HOH A 196 596 198 HOH HOH . G 4 HOH A 197 597 164 HOH HOH . G 4 HOH A 198 598 206 HOH HOH . G 4 HOH A 199 599 136 HOH HOH . G 4 HOH A 200 600 127 HOH HOH . G 4 HOH A 201 601 183 HOH HOH . G 4 HOH A 202 602 103 HOH HOH . G 4 HOH A 203 603 148 HOH HOH . G 4 HOH A 204 604 199 HOH HOH . G 4 HOH A 205 605 176 HOH HOH . G 4 HOH A 206 606 222 HOH HOH . G 4 HOH A 207 607 217 HOH HOH . G 4 HOH A 208 608 145 HOH HOH . G 4 HOH A 209 609 116 HOH HOH . G 4 HOH A 210 610 205 HOH HOH . G 4 HOH A 211 611 228 HOH HOH . G 4 HOH A 212 612 160 HOH HOH . G 4 HOH A 213 613 214 HOH HOH . G 4 HOH A 214 614 215 HOH HOH . G 4 HOH A 215 615 243 HOH HOH . G 4 HOH A 216 616 182 HOH HOH . G 4 HOH A 217 617 203 HOH HOH . G 4 HOH A 218 618 175 HOH HOH . G 4 HOH A 219 619 170 HOH HOH . G 4 HOH A 220 620 224 HOH HOH . G 4 HOH A 221 621 97 HOH HOH . G 4 HOH A 222 622 94 HOH HOH . G 4 HOH A 223 623 223 HOH HOH . G 4 HOH A 224 624 197 HOH HOH . G 4 HOH A 225 625 236 HOH HOH . G 4 HOH A 226 626 92 HOH HOH . G 4 HOH A 227 627 132 HOH HOH . G 4 HOH A 228 628 229 HOH HOH . G 4 HOH A 229 629 207 HOH HOH . G 4 HOH A 230 630 227 HOH HOH . G 4 HOH A 231 631 238 HOH HOH . G 4 HOH A 232 632 162 HOH HOH . G 4 HOH A 233 633 174 HOH HOH . G 4 HOH A 234 634 211 HOH HOH . G 4 HOH A 235 635 89 HOH HOH . G 4 HOH A 236 636 60 HOH HOH . G 4 HOH A 237 637 84 HOH HOH . G 4 HOH A 238 638 93 HOH HOH . G 4 HOH A 239 639 194 HOH HOH . G 4 HOH A 240 640 209 HOH HOH . G 4 HOH A 241 641 139 HOH HOH . G 4 HOH A 242 642 181 HOH HOH . G 4 HOH A 243 643 244 HOH HOH . G 4 HOH A 244 644 169 HOH HOH . G 4 HOH A 245 645 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 2 59.954 102.565 84.026 0.83 71.56 ? S1 DTT 303 A 1 HETATM 2 C C1 DTT . . . D 2 61.681 102.962 84.44 0.83 65.2 ? C1 DTT 303 A 1 HETATM 3 C C2 DTT . . . D 2 62.353 101.806 85.178 0.83 58.7 ? C2 DTT 303 A 1 HETATM 4 O O2 DTT . . . D 2 61.343 100.816 85.287 0.83 50.7 ? O2 DTT 303 A 1 HETATM 5 C C3 DTT . . . D 2 62.99 102.261 86.492 0.83 69.06 ? C3 DTT 303 A 1 HETATM 6 O O3 DTT . . . D 2 62.996 103.664 86.684 0.83 66.51 ? O3 DTT 303 A 1 HETATM 7 C C4 DTT . . . D 2 62.334 101.599 87.696 0.83 78.75 ? C4 DTT 303 A 1 HETATM 8 S S4 DTT . . . D 2 63.593 100.793 88.716 0.83 84.48 ? S4 DTT 303 A 1 HETATM 9 H HS1 DTT . . . D 2 60.256 101.904 83.399 0.83 85.96 ? HS1 DTT 303 A 1 HETATM 10 H H11 DTT . . . D 2 62.232 103.177 83.525 0.83 78.33 ? H11 DTT 303 A 1 HETATM 11 H H12 DTT . . . D 2 61.707 103.855 85.065 0.83 78.33 ? H12 DTT 303 A 1 HETATM 12 H H2 DTT . . . D 2 63.209 101.386 84.65 0.83 70.53 ? H2 DTT 303 A 1 HETATM 13 H HO2 DTT . . . D 2 60.596 101.168 85.814 0.83 60.93 ? HO2 DTT 303 A 1 HETATM 14 H H3 DTT . . . D 2 64.03 101.947 86.409 0.83 82.96 ? H3 DTT 303 A 1 HETATM 15 H HO3 DTT . . . D 2 62.67 103.871 87.585 0.83 79.91 ? HO3 DTT 303 A 1 HETATM 16 H H41 DTT . . . D 2 61.806 102.348 88.286 0.83 94.59 ? H41 DTT 303 A 1 HETATM 17 H H42 DTT . . . D 2 61.604 100.862 87.36 0.83 94.59 ? H42 DTT 303 A 1 HETATM 18 H HS2 DTT . . . D 2 62.94 100.16 89.023 0.83 101.47 ? HS2 DTT 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #