data_6MG1 # _model_server_result.job_id b2N-82GJ6HrMF2l0wmH-QA _model_server_result.datetime_utc '2024-11-05 00:30:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 6MG1 # _exptl.entry_id 6MG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.9 _cell.angle_gamma 90 _cell.entry_id 6MG1 _cell.length_a 48.11 _cell.length_b 77.405 _cell.length_c 99.825 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DG 7 C DG 7 1_555 C P 5CM 8 C 5CM 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale2 C O3' 5CM 8 C 5CM 8 1_555 C P DG 9 C DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 C O3' DG 9 C DG 9 1_555 C P 5CM 10 C 5CM 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? covale ? covale4 C O3' 5CM 10 C 5CM 10 1_555 C P DA 11 C DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? covale ? covale5 D O3' DG 7 D DG 107 1_555 D P 5CM 8 D 5CM 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale6 D O3' 5CM 8 D 5CM 108 1_555 D P DG 9 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale7 D O3' DG 9 D DG 109 1_555 D P 5CM 10 D 5CM 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale8 D O3' 5CM 10 D 5CM 110 1_555 D P DA 11 D DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? hydrog WATSON-CRICK hydrog1 C N1 DA 2 C DA 2 1_555 D N3 DT 15 D DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N6 DA 2 C DA 2 1_555 D O4 DT 15 D DT 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C N3 DT 3 C DT 3 1_555 D N1 DA 14 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 C O4 DT 3 C DT 3 1_555 D N6 DA 14 D DA 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N1 DA 4 C DA 4 1_555 D N3 DT 13 D DT 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N6 DA 4 C DA 4 1_555 D O4 DT 13 D DT 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 C N3 DT 5 C DT 5 1_555 D N1 DA 12 D DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 C O4 DT 5 C DT 5 1_555 D N6 DA 12 D DA 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 C N3 DT 6 C DT 6 1_555 D N1 DA 11 D DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C O4 DT 6 C DT 6 1_555 D N6 DA 11 D DA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C N1 DG 7 C DG 7 1_555 D N3 5CM 10 D 5CM 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 C N2 DG 7 C DG 7 1_555 D O2 5CM 10 D 5CM 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 C O6 DG 7 C DG 7 1_555 D N4 5CM 10 D 5CM 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 C N3 5CM 8 C 5CM 8 1_555 D N1 DG 9 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 C N4 5CM 8 C 5CM 8 1_555 D O6 DG 9 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 C O2 5CM 8 C 5CM 8 1_555 D N2 DG 9 D DG 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 C N1 DG 9 C DG 9 1_555 D N3 5CM 8 D 5CM 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 C N2 DG 9 C DG 9 1_555 D O2 5CM 8 D 5CM 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 C O6 DG 9 C DG 9 1_555 D N4 5CM 8 D 5CM 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 C N3 5CM 10 C 5CM 10 1_555 D N1 DG 7 D DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 C N4 5CM 10 C 5CM 10 1_555 D O6 DG 7 D DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 C O2 5CM 10 C 5CM 10 1_555 D N2 DG 7 D DG 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 C N1 DA 11 C DA 11 1_555 D N3 DT 6 D DT 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 C N6 DA 11 C DA 11 1_555 D O4 DT 6 D DT 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 C N1 DA 12 C DA 12 1_555 D N3 DT 5 D DT 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 C N6 DA 12 C DA 12 1_555 D O4 DT 5 D DT 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 C N3 DT 13 C DT 13 1_555 D N1 DA 4 D DA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 C O4 DT 13 C DT 13 1_555 D N6 DA 4 D DA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 C N1 DA 14 C DA 14 1_555 D N3 DT 3 D DT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 C N6 DA 14 C DA 14 1_555 D O4 DT 3 D DT 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 C N3 DT 15 C DT 15 1_555 D N1 DA 2 D DA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 C O4 DT 15 C DT 15 1_555 D N6 DA 2 D DA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 222 n n C1 C2 EDO sing 223 n n C1 H11 EDO sing 224 n n C1 H12 EDO sing 225 n n O1 HO1 EDO sing 226 n n C2 O2 EDO sing 227 n n C2 H21 EDO sing 228 n n C2 H22 EDO sing 229 n n O2 HO2 EDO sing 230 n n # _atom_sites.entry_id 6MG1 _atom_sites.fract_transf_matrix[1][1] 0.020786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005145 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01032 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO C 1 101 400 EDO EDO . F 3 EDO C 1 102 403 EDO EDO . G 3 EDO D 1 401 401 EDO EDO . H 3 EDO D 1 402 402 EDO EDO . I 4 GOL D 1 403 500 GOL GOL . J 5 HOH A 1 401 126 HOH HOH . J 5 HOH A 2 402 140 HOH HOH . J 5 HOH A 3 403 116 HOH HOH . J 5 HOH A 4 404 135 HOH HOH . J 5 HOH A 5 405 95 HOH HOH . J 5 HOH A 6 406 104 HOH HOH . J 5 HOH A 7 407 71 HOH HOH . J 5 HOH A 8 408 35 HOH HOH . J 5 HOH A 9 409 49 HOH HOH . J 5 HOH A 10 410 34 HOH HOH . J 5 HOH A 11 411 24 HOH HOH . J 5 HOH A 12 412 9 HOH HOH . J 5 HOH A 13 413 17 HOH HOH . J 5 HOH A 14 414 78 HOH HOH . J 5 HOH A 15 415 5 HOH HOH . J 5 HOH A 16 416 32 HOH HOH . J 5 HOH A 17 417 33 HOH HOH . J 5 HOH A 18 418 82 HOH HOH . J 5 HOH A 19 419 84 HOH HOH . J 5 HOH A 20 420 129 HOH HOH . J 5 HOH A 21 421 123 HOH HOH . J 5 HOH A 22 422 69 HOH HOH . J 5 HOH A 23 423 101 HOH HOH . J 5 HOH A 24 424 93 HOH HOH . J 5 HOH A 25 425 114 HOH HOH . K 5 HOH B 1 401 44 HOH HOH . K 5 HOH B 2 402 119 HOH HOH . K 5 HOH B 3 403 4 HOH HOH . K 5 HOH B 4 404 106 HOH HOH . K 5 HOH B 5 405 90 HOH HOH . K 5 HOH B 6 406 21 HOH HOH . K 5 HOH B 7 407 6 HOH HOH . K 5 HOH B 8 408 80 HOH HOH . K 5 HOH B 9 409 26 HOH HOH . K 5 HOH B 10 410 143 HOH HOH . K 5 HOH B 11 411 52 HOH HOH . K 5 HOH B 12 412 62 HOH HOH . K 5 HOH B 13 413 77 HOH HOH . K 5 HOH B 14 414 63 HOH HOH . K 5 HOH B 15 415 68 HOH HOH . K 5 HOH B 16 416 28 HOH HOH . K 5 HOH B 17 417 142 HOH HOH . K 5 HOH B 18 418 121 HOH HOH . K 5 HOH B 19 419 10 HOH HOH . K 5 HOH B 20 420 122 HOH HOH . K 5 HOH B 21 421 86 HOH HOH . K 5 HOH B 22 422 64 HOH HOH . K 5 HOH B 23 423 139 HOH HOH . K 5 HOH B 24 424 118 HOH HOH . K 5 HOH B 25 425 87 HOH HOH . K 5 HOH B 26 426 132 HOH HOH . K 5 HOH B 27 427 125 HOH HOH . K 5 HOH B 28 428 110 HOH HOH . K 5 HOH B 29 429 120 HOH HOH . L 5 HOH C 1 201 13 HOH HOH . L 5 HOH C 2 202 81 HOH HOH . L 5 HOH C 3 203 20 HOH HOH . L 5 HOH C 4 204 54 HOH HOH . L 5 HOH C 5 205 102 HOH HOH . L 5 HOH C 6 206 12 HOH HOH . L 5 HOH C 7 207 83 HOH HOH . L 5 HOH C 8 208 117 HOH HOH . L 5 HOH C 9 209 61 HOH HOH . L 5 HOH C 10 210 11 HOH HOH . L 5 HOH C 11 211 7 HOH HOH . L 5 HOH C 12 212 56 HOH HOH . L 5 HOH C 13 213 47 HOH HOH . L 5 HOH C 14 214 75 HOH HOH . L 5 HOH C 15 215 55 HOH HOH . L 5 HOH C 16 216 97 HOH HOH . L 5 HOH C 17 217 109 HOH HOH . L 5 HOH C 18 218 88 HOH HOH . L 5 HOH C 19 219 133 HOH HOH . L 5 HOH C 20 220 43 HOH HOH . L 5 HOH C 21 221 25 HOH HOH . L 5 HOH C 22 222 36 HOH HOH . L 5 HOH C 23 223 74 HOH HOH . L 5 HOH C 24 224 40 HOH HOH . L 5 HOH C 25 225 50 HOH HOH . L 5 HOH C 26 226 41 HOH HOH . L 5 HOH C 27 227 37 HOH HOH . L 5 HOH C 28 228 70 HOH HOH . L 5 HOH C 29 229 14 HOH HOH . L 5 HOH C 30 230 111 HOH HOH . L 5 HOH C 31 231 100 HOH HOH . L 5 HOH C 32 232 103 HOH HOH . L 5 HOH C 33 233 130 HOH HOH . L 5 HOH C 34 234 134 HOH HOH . L 5 HOH C 35 235 58 HOH HOH . L 5 HOH C 36 236 127 HOH HOH . L 5 HOH C 37 237 138 HOH HOH . L 5 HOH C 38 238 66 HOH HOH . L 5 HOH C 39 239 94 HOH HOH . L 5 HOH C 40 240 85 HOH HOH . M 5 HOH D 1 501 141 HOH HOH . M 5 HOH D 2 502 99 HOH HOH . M 5 HOH D 3 503 105 HOH HOH . M 5 HOH D 4 504 19 HOH HOH . M 5 HOH D 5 505 67 HOH HOH . M 5 HOH D 6 506 65 HOH HOH . M 5 HOH D 7 507 76 HOH HOH . M 5 HOH D 8 508 48 HOH HOH . M 5 HOH D 9 509 136 HOH HOH . M 5 HOH D 10 510 46 HOH HOH . M 5 HOH D 11 511 16 HOH HOH . M 5 HOH D 12 512 2 HOH HOH . M 5 HOH D 13 513 113 HOH HOH . M 5 HOH D 14 514 92 HOH HOH . M 5 HOH D 15 515 53 HOH HOH . M 5 HOH D 16 516 72 HOH HOH . M 5 HOH D 17 517 59 HOH HOH . M 5 HOH D 18 518 42 HOH HOH . M 5 HOH D 19 519 57 HOH HOH . M 5 HOH D 20 520 98 HOH HOH . M 5 HOH D 21 521 15 HOH HOH . M 5 HOH D 22 522 45 HOH HOH . M 5 HOH D 23 523 60 HOH HOH . M 5 HOH D 24 524 89 HOH HOH . M 5 HOH D 25 525 8 HOH HOH . M 5 HOH D 26 526 112 HOH HOH . M 5 HOH D 27 527 38 HOH HOH . M 5 HOH D 28 528 18 HOH HOH . M 5 HOH D 29 529 51 HOH HOH . M 5 HOH D 30 530 39 HOH HOH . M 5 HOH D 31 531 128 HOH HOH . M 5 HOH D 32 532 73 HOH HOH . M 5 HOH D 33 533 91 HOH HOH . M 5 HOH D 34 534 107 HOH HOH . M 5 HOH D 35 535 137 HOH HOH . M 5 HOH D 36 536 131 HOH HOH . M 5 HOH D 37 537 124 HOH HOH . M 5 HOH D 38 538 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 3 52.781 -0.779 24.926 1 58.16 ? C1 EDO 402 D 1 HETATM 2 O O1 EDO . . . H 3 53.081 -0.934 23.533 1 53.71 ? O1 EDO 402 D 1 HETATM 3 C C2 EDO . . . H 3 53.617 0.363 25.486 1 56.2 ? C2 EDO 402 D 1 HETATM 4 O O2 EDO . . . H 3 54.997 0.134 25.184 1 56.45 ? O2 EDO 402 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #