data_6MGI # _model_server_result.job_id F3JDmBtSOOIxM7Y2aEPNKw _model_server_result.datetime_utc '2024-11-09 02:09:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 6MGI # _exptl.entry_id 6MGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MGI _cell.length_a 152.087 _cell.length_b 170.679 _cell.length_c 244.622 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6P _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ALPHA-D-GLUCOSE-6-PHOSPHATE;6-O-phosphono-alpha-D-glucose;6-O-phosphono-D-glucose;6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6P sing 92 n n C1 O1 G6P sing 93 n n C1 O5 G6P sing 94 n n C1 H1 G6P sing 95 n n C2 C3 G6P sing 96 n n C2 O2 G6P sing 97 n n C2 H2 G6P sing 98 n n C3 C4 G6P sing 99 n n C3 O3 G6P sing 100 n n C3 H3 G6P sing 101 n n C4 C5 G6P sing 102 n n C4 O4 G6P sing 103 n n C4 H4 G6P sing 104 n n C5 C6 G6P sing 105 n n C5 O5 G6P sing 106 n n C5 H5 G6P sing 107 n n C6 O6 G6P sing 108 n n C6 H61 G6P sing 109 n n C6 H62 G6P sing 110 n n O1 HO1 G6P sing 111 n n O2 HO2 G6P sing 112 n n O3 HO3 G6P sing 113 n n O4 HO4 G6P sing 114 n n O6 P G6P sing 115 n n P O1P G6P sing 116 n n P O2P G6P sing 117 n n P O3P G6P doub 118 n n O1P HO1P G6P sing 119 n n O2P HO2P G6P sing 120 n n # _pdbx_chem_comp_identifier.comp_id G6P _pdbx_chem_comp_identifier.identifier a-D-Glcp6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 6MGI _atom_sites.fract_transf_matrix[1][1] 0.006575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLY A 1 1001 649 GLY GLY . D 3 G6P A 1 1002 2 G6P G6P . E 4 EDO A 1 1003 2 EDO EDO . F 4 EDO A 1 1004 3 EDO EDO . G 4 EDO A 1 1005 7 EDO EDO . H 4 EDO A 1 1006 8 EDO EDO . I 5 PGA A 1 1007 1 PGA PGA . J 2 GLY B 1 1001 650 GLY GLY . K 3 G6P B 1 1002 1 G6P G6P . L 4 EDO B 1 1003 5 EDO EDO . M 4 EDO B 1 1004 6 EDO EDO . N 6 GOL B 1 1005 1 GOL GOL . O 6 GOL B 1 1006 3 GOL GOL . P 5 PGA B 1 1007 2 PGA PGA . Q 7 HOH A 1 1101 50 HOH HOH . Q 7 HOH A 2 1102 28 HOH HOH . Q 7 HOH A 3 1103 59 HOH HOH . Q 7 HOH A 4 1104 10 HOH HOH . Q 7 HOH A 5 1105 33 HOH HOH . Q 7 HOH A 6 1106 23 HOH HOH . Q 7 HOH A 7 1107 58 HOH HOH . Q 7 HOH A 8 1108 45 HOH HOH . Q 7 HOH A 9 1109 20 HOH HOH . Q 7 HOH A 10 1110 34 HOH HOH . Q 7 HOH A 11 1111 35 HOH HOH . Q 7 HOH A 12 1112 21 HOH HOH . Q 7 HOH A 13 1113 51 HOH HOH . R 7 HOH B 1 1101 13 HOH HOH . R 7 HOH B 2 1102 32 HOH HOH . R 7 HOH B 3 1103 57 HOH HOH . R 7 HOH B 4 1104 22 HOH HOH . R 7 HOH B 5 1105 26 HOH HOH . R 7 HOH B 6 1106 11 HOH HOH . R 7 HOH B 7 1107 5 HOH HOH . R 7 HOH B 8 1108 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6P . . . D 3 46.735 -0.1 -28.877 1 46.32 ? C1 G6P 1002 A 1 HETATM 2 C C2 G6P . . . D 3 47.725 -0.912 -28.051 1 44.81 ? C2 G6P 1002 A 1 HETATM 3 C C3 G6P . . . D 3 49.006 -0.125 -27.812 1 41.76 ? C3 G6P 1002 A 1 HETATM 4 C C4 G6P . . . D 3 49.555 0.391 -29.132 1 44.03 ? C4 G6P 1002 A 1 HETATM 5 C C5 G6P . . . D 3 48.488 1.205 -29.846 1 47.36 ? C5 G6P 1002 A 1 HETATM 6 C C6 G6P . . . D 3 49.004 1.714 -31.184 1 50.35 ? C6 G6P 1002 A 1 HETATM 7 O O1 G6P . . . D 3 46.268 1.011 -28.105 1 39.66 ? O1 G6P 1002 A 1 HETATM 8 O O2 G6P . . . D 3 47.13 -1.238 -26.792 1 47.55 ? O2 G6P 1002 A 1 HETATM 9 O O3 G6P . . . D 3 49.979 -0.966 -27.183 1 37.69 ? O3 G6P 1002 A 1 HETATM 10 O O4 G6P . . . D 3 50.705 1.207 -28.894 1 52.82 ? O4 G6P 1002 A 1 HETATM 11 O O5 G6P . . . D 3 47.351 0.375 -30.078 1 48.14 ? O5 G6P 1002 A 1 HETATM 12 O O6 G6P . . . D 3 49.275 0.605 -32.038 1 53.87 ? O6 G6P 1002 A 1 HETATM 13 P P G6P . . . D 3 50.688 0.515 -32.805 1 50.82 ? P G6P 1002 A 1 HETATM 14 O O1P G6P . . . D 3 50.54 -0.693 -33.696 1 51.34 ? O1P G6P 1002 A 1 HETATM 15 O O2P G6P . . . D 3 51.695 0.355 -31.692 1 49.82 ? O2P G6P 1002 A 1 HETATM 16 O O3P G6P . . . D 3 50.791 1.825 -33.547 1 57.24 ? O3P G6P 1002 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #