data_6MGI # _model_server_result.job_id EsZRsyhCzPXGvofEBzffVQ _model_server_result.datetime_utc '2024-11-29 14:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1005}' # _entry.id 6MGI # _exptl.entry_id 6MGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MGI _cell.length_a 152.087 _cell.length_b 170.679 _cell.length_c 244.622 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 L N N ? 4 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6MGI _atom_sites.fract_transf_matrix[1][1] 0.006575 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004088 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLY A 1 1001 649 GLY GLY . D 3 G6P A 1 1002 2 G6P G6P . E 4 EDO A 1 1003 2 EDO EDO . F 4 EDO A 1 1004 3 EDO EDO . G 4 EDO A 1 1005 7 EDO EDO . H 4 EDO A 1 1006 8 EDO EDO . I 5 PGA A 1 1007 1 PGA PGA . J 2 GLY B 1 1001 650 GLY GLY . K 3 G6P B 1 1002 1 G6P G6P . L 4 EDO B 1 1003 5 EDO EDO . M 4 EDO B 1 1004 6 EDO EDO . N 6 GOL B 1 1005 1 GOL GOL . O 6 GOL B 1 1006 3 GOL GOL . P 5 PGA B 1 1007 2 PGA PGA . Q 7 HOH A 1 1101 50 HOH HOH . Q 7 HOH A 2 1102 28 HOH HOH . Q 7 HOH A 3 1103 59 HOH HOH . Q 7 HOH A 4 1104 10 HOH HOH . Q 7 HOH A 5 1105 33 HOH HOH . Q 7 HOH A 6 1106 23 HOH HOH . Q 7 HOH A 7 1107 58 HOH HOH . Q 7 HOH A 8 1108 45 HOH HOH . Q 7 HOH A 9 1109 20 HOH HOH . Q 7 HOH A 10 1110 34 HOH HOH . Q 7 HOH A 11 1111 35 HOH HOH . Q 7 HOH A 12 1112 21 HOH HOH . Q 7 HOH A 13 1113 51 HOH HOH . R 7 HOH B 1 1101 13 HOH HOH . R 7 HOH B 2 1102 32 HOH HOH . R 7 HOH B 3 1103 57 HOH HOH . R 7 HOH B 4 1104 22 HOH HOH . R 7 HOH B 5 1105 26 HOH HOH . R 7 HOH B 6 1106 11 HOH HOH . R 7 HOH B 7 1107 5 HOH HOH . R 7 HOH B 8 1108 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 47.982 -5.689 -35.918 1 50.82 ? C1 EDO 1005 A 1 HETATM 2 O O1 EDO . . . G 4 48.221 -5.291 -34.565 1 50.82 ? O1 EDO 1005 A 1 HETATM 3 C C2 EDO . . . G 4 47.409 -7.098 -35.93 1 50.82 ? C2 EDO 1005 A 1 HETATM 4 O O2 EDO . . . G 4 46.991 -7.42 -37.258 1 50.82 ? O2 EDO 1005 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 4 #