data_6MGQ # _model_server_result.job_id 35ae-_Z4LZlmGtBLpBttEA _model_server_result.datetime_utc '2024-12-23 06:51:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mgq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1001}' # _entry.id 6MGQ # _exptl.entry_id 6MGQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.12 _cell.angle_gamma 90 _cell.entry_id 6MGQ _cell.length_a 56.14 _cell.length_b 234.7 _cell.length_c 132.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MGQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,H,M,N,S 1 1 B,E,I,J,O,P,T 2 1 C,F,K,L,Q,R,U 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 M N N ? 6 O N N ? 6 Q N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG G 1 NAG 3 n G NAG 2 G 2 NAG G 2 NAG 3 n G BMA 3 G 3 BMA G 3 BMA 3 n G MAN 4 G 4 MAN G 4 MAN 4 n H NAG 1 H 1 NAG H 1 NAG 4 n H NAG 2 H 2 NAG H 2 NAG 5 n I NAG 1 I 1 NAG I 1 NAG 5 n I NAG 2 I 2 NAG I 2 NAG 5 n I BMA 3 I 3 BMA I 3 BMA 5 n J NAG 1 J 1 NAG J 1 NAG 5 n J NAG 2 J 2 NAG J 2 NAG 5 n J BMA 3 J 3 BMA J 3 BMA 4 n K NAG 1 K 1 NAG K 1 NAG 4 n K NAG 2 K 2 NAG K 2 NAG 4 n L NAG 1 L 1 NAG L 1 NAG 4 n L NAG 2 L 2 NAG L 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 372 A CYS 404 1_555 A SG CYS 411 A CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 A SG CYS 704 A CYS 736 1_555 A SG CYS 711 A CYS 743 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 372 B CYS 404 1_555 B SG CYS 411 B CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 704 B CYS 736 1_555 B SG CYS 711 B CYS 743 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 372 C CYS 404 1_555 C SG CYS 411 C CYS 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 C SG CYS 704 C CYS 736 1_555 C SG CYS 711 C CYS 743 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 38 A ASN 70 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 122 A ASN 154 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 B ND2 ASN 38 B ASN 70 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 B ND2 ASN 122 B ASN 154 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C ND2 ASN 38 C ASN 70 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 C ND2 ASN 122 C ASN 154 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D P11 2X0 1 D 2X0 1 1_555 D C6 7GA 2 D 7GA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 sing covale ? covale8 D C 7GA 2 D 7GA 2 1_555 D N THR 3 D THR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale9 E P11 2X0 1 E 2X0 1 1_555 E C6 7GA 2 E 7GA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 sing covale ? covale10 E C 7GA 2 E 7GA 2 1_555 E N THR 3 E THR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale11 F P11 2X0 1 F 2X0 1 1_555 F C6 7GA 2 F 7GA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 sing covale ? covale12 F C 7GA 2 F 7GA 2 1_555 F N THR 3 F THR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale15 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale18 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale20 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale21 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale22 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 A NE2 HIS 321 A HIS 353 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc2 A NE2 HIS 325 A HIS 357 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc3 A OE1 GLU 344 A GLU 376 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc4 A OE2 GLU 344 A GLU 376 1_555 M ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc5 M ZN ZN . A ZN 1001 1_555 D O12 2X0 1 D 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 M ZN ZN . A ZN 1001 1_555 D O13 2X0 1 D 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc7 B NE2 HIS 321 B HIS 353 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc8 B NE2 HIS 325 B HIS 357 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc9 B OE1 GLU 344 B GLU 376 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc10 B OE2 GLU 344 B GLU 376 1_555 O ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc11 O ZN ZN . B ZN 1001 1_555 E O12 2X0 1 E 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc12 O ZN ZN . B ZN 1001 1_555 E O13 2X0 1 E 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc13 C NE2 HIS 321 C HIS 353 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc14 C NE2 HIS 325 C HIS 357 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc15 C OE1 GLU 344 C GLU 376 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc16 C OE2 GLU 344 C GLU 376 1_555 Q ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc17 Q ZN ZN . C ZN 1001 1_555 F O12 2X0 1 F 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc18 Q ZN ZN . C ZN 1001 1_555 F O13 2X0 1 F 2X0 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MGQ _atom_sites.fract_transf_matrix[1][1] 0.017813 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000971 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 6 ZN A 1 1001 1001 ZN ZN . N 7 UNX A 1 1002 1200 UNX UNX . O 6 ZN B 1 1001 1001 ZN ZN . P 7 UNX B 1 1002 1200 UNX UNX . Q 6 ZN C 1 1001 1001 ZN ZN . R 7 UNX C 1 1002 1200 UNX UNX . S 8 HOH A 1 1101 1101 HOH HOH . S 8 HOH A 2 1102 1102 HOH HOH . S 8 HOH A 3 1103 1103 HOH HOH . S 8 HOH A 4 1104 1104 HOH HOH . S 8 HOH A 5 1105 1105 HOH HOH . S 8 HOH A 6 1106 1106 HOH HOH . S 8 HOH A 7 1107 1107 HOH HOH . S 8 HOH A 8 1108 1108 HOH HOH . S 8 HOH A 9 1109 1109 HOH HOH . S 8 HOH A 10 1110 1110 HOH HOH . S 8 HOH A 11 1111 1111 HOH HOH . S 8 HOH A 12 1112 1112 HOH HOH . S 8 HOH A 13 1113 1113 HOH HOH . S 8 HOH A 14 1114 1115 HOH HOH . T 8 HOH B 1 1101 1101 HOH HOH . T 8 HOH B 2 1102 1102 HOH HOH . T 8 HOH B 3 1103 1103 HOH HOH . T 8 HOH B 4 1104 1104 HOH HOH . T 8 HOH B 5 1105 1105 HOH HOH . T 8 HOH B 6 1106 1106 HOH HOH . T 8 HOH B 7 1107 1107 HOH HOH . T 8 HOH B 8 1108 1108 HOH HOH . T 8 HOH B 9 1109 1109 HOH HOH . T 8 HOH B 10 1110 1110 HOH HOH . T 8 HOH B 11 1111 1112 HOH HOH . T 8 HOH B 12 1112 1113 HOH HOH . T 8 HOH B 13 1113 1114 HOH HOH . T 8 HOH B 14 1114 1115 HOH HOH . U 8 HOH C 1 1101 1101 HOH HOH . U 8 HOH C 2 1102 1102 HOH HOH . U 8 HOH C 3 1103 1103 HOH HOH . U 8 HOH C 4 1104 1104 HOH HOH . U 8 HOH C 5 1105 1105 HOH HOH . U 8 HOH C 6 1106 1106 HOH HOH . U 8 HOH C 7 1107 1108 HOH HOH . U 8 HOH C 8 1108 1109 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 6 _atom_site.Cartn_x 58.968 _atom_site.Cartn_y 56.691 _atom_site.Cartn_z 24.201 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #