data_6MH6 # _model_server_result.job_id yhIt7KPtuwnlJHRIfYuVAQ _model_server_result.datetime_utc '2025-09-04 15:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mh6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6MH6 # _exptl.entry_id 6MH6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MH6 _cell.length_a 68.3 _cell.length_b 68.3 _cell.length_c 108.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc1 A O THR 16 A THR 16 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc8 B CA CA . A CA 301 1_555 E O HOH . A HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc9 B CA CA . A CA 301 1_555 E O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc10 B CA CA . A CA 301 1_555 E O HOH . A HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 B CA CA . A CA 301 1_555 E O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc12 C CA CA . A CA 302 1_555 E O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc13 C CA CA . A CA 302 1_555 E O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc14 C CA CA . A CA 302 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc15 C CA CA . A CA 302 1_555 E O HOH . A HOH 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 6MH6 _atom_sites.fract_transf_matrix[1][1] 0.014641 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 299 CA CA . C 2 CA A 1 302 300 CA CA . D 3 NO3 A 1 303 301 NO3 NO3 . E 4 HOH A 1 401 329 HOH HOH . E 4 HOH A 2 402 402 HOH HOH . E 4 HOH A 3 403 405 HOH HOH . E 4 HOH A 4 404 394 HOH HOH . E 4 HOH A 5 405 346 HOH HOH . E 4 HOH A 6 406 309 HOH HOH . E 4 HOH A 7 407 403 HOH HOH . E 4 HOH A 8 408 384 HOH HOH . E 4 HOH A 9 409 393 HOH HOH . E 4 HOH A 10 410 395 HOH HOH . E 4 HOH A 11 411 408 HOH HOH . E 4 HOH A 12 412 376 HOH HOH . E 4 HOH A 13 413 314 HOH HOH . E 4 HOH A 14 414 369 HOH HOH . E 4 HOH A 15 415 320 HOH HOH . E 4 HOH A 16 416 306 HOH HOH . E 4 HOH A 17 417 370 HOH HOH . E 4 HOH A 18 418 345 HOH HOH . E 4 HOH A 19 419 321 HOH HOH . E 4 HOH A 20 420 407 HOH HOH . E 4 HOH A 21 421 434 HOH HOH . E 4 HOH A 22 422 438 HOH HOH . E 4 HOH A 23 423 355 HOH HOH . E 4 HOH A 24 424 363 HOH HOH . E 4 HOH A 25 425 390 HOH HOH . E 4 HOH A 26 426 349 HOH HOH . E 4 HOH A 27 427 360 HOH HOH . E 4 HOH A 28 428 401 HOH HOH . E 4 HOH A 29 429 420 HOH HOH . E 4 HOH A 30 430 348 HOH HOH . E 4 HOH A 31 431 382 HOH HOH . E 4 HOH A 32 432 373 HOH HOH . E 4 HOH A 33 433 399 HOH HOH . E 4 HOH A 34 434 366 HOH HOH . E 4 HOH A 35 435 336 HOH HOH . E 4 HOH A 36 436 337 HOH HOH . E 4 HOH A 37 437 308 HOH HOH . E 4 HOH A 38 438 338 HOH HOH . E 4 HOH A 39 439 400 HOH HOH . E 4 HOH A 40 440 319 HOH HOH . E 4 HOH A 41 441 421 HOH HOH . E 4 HOH A 42 442 316 HOH HOH . E 4 HOH A 43 443 347 HOH HOH . E 4 HOH A 44 444 323 HOH HOH . E 4 HOH A 45 445 339 HOH HOH . E 4 HOH A 46 446 326 HOH HOH . E 4 HOH A 47 447 391 HOH HOH . E 4 HOH A 48 448 368 HOH HOH . E 4 HOH A 49 449 305 HOH HOH . E 4 HOH A 50 450 362 HOH HOH . E 4 HOH A 51 451 406 HOH HOH . E 4 HOH A 52 452 388 HOH HOH . E 4 HOH A 53 453 392 HOH HOH . E 4 HOH A 54 454 428 HOH HOH . E 4 HOH A 55 455 333 HOH HOH . E 4 HOH A 56 456 412 HOH HOH . E 4 HOH A 57 457 436 HOH HOH . E 4 HOH A 58 458 375 HOH HOH . E 4 HOH A 59 459 372 HOH HOH . E 4 HOH A 60 460 310 HOH HOH . E 4 HOH A 61 461 435 HOH HOH . E 4 HOH A 62 462 418 HOH HOH . E 4 HOH A 63 463 302 HOH HOH . E 4 HOH A 64 464 433 HOH HOH . E 4 HOH A 65 465 423 HOH HOH . E 4 HOH A 66 466 383 HOH HOH . E 4 HOH A 67 467 342 HOH HOH . E 4 HOH A 68 468 315 HOH HOH . E 4 HOH A 69 469 307 HOH HOH . E 4 HOH A 70 470 356 HOH HOH . E 4 HOH A 71 471 364 HOH HOH . E 4 HOH A 72 472 371 HOH HOH . E 4 HOH A 73 473 426 HOH HOH . E 4 HOH A 74 474 381 HOH HOH . E 4 HOH A 75 475 304 HOH HOH . E 4 HOH A 76 476 313 HOH HOH . E 4 HOH A 77 477 417 HOH HOH . E 4 HOH A 78 478 303 HOH HOH . E 4 HOH A 79 479 385 HOH HOH . E 4 HOH A 80 480 350 HOH HOH . E 4 HOH A 81 481 378 HOH HOH . E 4 HOH A 82 482 351 HOH HOH . E 4 HOH A 83 483 341 HOH HOH . E 4 HOH A 84 484 398 HOH HOH . E 4 HOH A 85 485 410 HOH HOH . E 4 HOH A 86 486 367 HOH HOH . E 4 HOH A 87 487 340 HOH HOH . E 4 HOH A 88 488 327 HOH HOH . E 4 HOH A 89 489 425 HOH HOH . E 4 HOH A 90 490 427 HOH HOH . E 4 HOH A 91 491 416 HOH HOH . E 4 HOH A 92 492 317 HOH HOH . E 4 HOH A 93 493 374 HOH HOH . E 4 HOH A 94 494 386 HOH HOH . E 4 HOH A 95 495 419 HOH HOH . E 4 HOH A 96 496 335 HOH HOH . E 4 HOH A 97 497 380 HOH HOH . E 4 HOH A 98 498 325 HOH HOH . E 4 HOH A 99 499 432 HOH HOH . E 4 HOH A 100 500 312 HOH HOH . E 4 HOH A 101 501 365 HOH HOH . E 4 HOH A 102 502 389 HOH HOH . E 4 HOH A 103 503 318 HOH HOH . E 4 HOH A 104 504 437 HOH HOH . E 4 HOH A 105 505 352 HOH HOH . E 4 HOH A 106 506 409 HOH HOH . E 4 HOH A 107 507 379 HOH HOH . E 4 HOH A 108 508 343 HOH HOH . E 4 HOH A 109 509 377 HOH HOH . E 4 HOH A 110 510 344 HOH HOH . E 4 HOH A 111 511 431 HOH HOH . E 4 HOH A 112 512 328 HOH HOH . E 4 HOH A 113 513 415 HOH HOH . E 4 HOH A 114 514 387 HOH HOH . E 4 HOH A 115 515 331 HOH HOH . E 4 HOH A 116 516 414 HOH HOH . E 4 HOH A 117 517 411 HOH HOH . E 4 HOH A 118 518 422 HOH HOH . E 4 HOH A 119 519 354 HOH HOH . E 4 HOH A 120 520 332 HOH HOH . E 4 HOH A 121 521 424 HOH HOH . E 4 HOH A 122 522 322 HOH HOH . E 4 HOH A 123 523 359 HOH HOH . E 4 HOH A 124 524 404 HOH HOH . E 4 HOH A 125 525 413 HOH HOH . E 4 HOH A 126 526 396 HOH HOH . E 4 HOH A 127 527 334 HOH HOH . E 4 HOH A 128 528 358 HOH HOH . E 4 HOH A 129 529 430 HOH HOH . E 4 HOH A 130 530 324 HOH HOH . E 4 HOH A 131 531 361 HOH HOH . E 4 HOH A 132 532 330 HOH HOH . E 4 HOH A 133 533 429 HOH HOH . E 4 HOH A 134 534 397 HOH HOH . E 4 HOH A 135 535 311 HOH HOH . E 4 HOH A 136 536 357 HOH HOH . E 4 HOH A 137 537 353 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 17.635 1.279 11.332 1 27.75 ? N NO3 303 A 1 HETATM 2 O O1 NO3 . . . D 3 17.466 0.199 10.754 1 28.07 ? O1 NO3 303 A 1 HETATM 3 O O2 NO3 . . . D 3 17.715 1.422 12.701 1 28.36 ? O2 NO3 303 A 1 HETATM 4 O O3 NO3 . . . D 3 17.779 2.465 10.645 1 29.54 ? O3 NO3 303 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #