data_6MHD # _model_server_result.job_id qPykYtNBlxfzIBTRovTKtQ _model_server_result.datetime_utc '2024-11-24 00:06:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mhd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6MHD # _exptl.entry_id 6MHD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.079 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 114.73 _cell.angle_gamma 90 _cell.entry_id 6MHD _cell.length_a 60.159 _cell.length_b 71.06 _cell.length_c 60.443 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MHD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 35 A CYS 32 1_555 C C2 JRD . A JRD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale2 B SG CYS 35 B CYS 32 1_555 F C2 JRD . B JRD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? # _chem_comp.formula 'C3 H6 O' _chem_comp.formula_weight 58.079 _chem_comp.id ACN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACN doub 1 n n C C1 ACN sing 2 n n C C2 ACN sing 3 n n C1 H11 ACN sing 4 n n C1 H12 ACN sing 5 n n C1 H13 ACN sing 6 n n C2 H21 ACN sing 7 n n C2 H22 ACN sing 8 n n C2 H23 ACN sing 9 n n # _atom_sites.entry_id 6MHD _atom_sites.fract_transf_matrix[1][1] 0.016623 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014073 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JRD A 1 401 401 JRD 044 . D 3 MES A 1 402 1 MES MES . E 4 ACN A 1 403 1 ACN ACN . F 2 JRD B 1 301 402 JRD 044 . G 3 MES B 1 302 2 MES MES . H 4 ACN B 1 303 4 ACN ACN . I 5 HOH A 1 501 167 HOH HOH . I 5 HOH A 2 502 3 HOH HOH . I 5 HOH A 3 503 14 HOH HOH . I 5 HOH A 4 504 39 HOH HOH . I 5 HOH A 5 505 62 HOH HOH . I 5 HOH A 6 506 125 HOH HOH . I 5 HOH A 7 507 25 HOH HOH . I 5 HOH A 8 508 154 HOH HOH . I 5 HOH A 9 509 18 HOH HOH . I 5 HOH A 10 510 101 HOH HOH . I 5 HOH A 11 511 91 HOH HOH . I 5 HOH A 12 512 121 HOH HOH . I 5 HOH A 13 513 170 HOH HOH . I 5 HOH A 14 514 1 HOH HOH . I 5 HOH A 15 515 2 HOH HOH . I 5 HOH A 16 516 6 HOH HOH . I 5 HOH A 17 517 28 HOH HOH . I 5 HOH A 18 518 30 HOH HOH . I 5 HOH A 19 519 48 HOH HOH . I 5 HOH A 20 520 129 HOH HOH . I 5 HOH A 21 521 16 HOH HOH . I 5 HOH A 22 522 66 HOH HOH . I 5 HOH A 23 523 112 HOH HOH . I 5 HOH A 24 524 157 HOH HOH . I 5 HOH A 25 525 150 HOH HOH . I 5 HOH A 26 526 43 HOH HOH . I 5 HOH A 27 527 103 HOH HOH . I 5 HOH A 28 528 140 HOH HOH . I 5 HOH A 29 529 106 HOH HOH . I 5 HOH A 30 530 19 HOH HOH . I 5 HOH A 31 531 85 HOH HOH . I 5 HOH A 32 532 169 HOH HOH . I 5 HOH A 33 533 119 HOH HOH . I 5 HOH A 34 534 59 HOH HOH . I 5 HOH A 35 535 73 HOH HOH . I 5 HOH A 36 536 35 HOH HOH . I 5 HOH A 37 537 79 HOH HOH . I 5 HOH A 38 538 122 HOH HOH . I 5 HOH A 39 539 26 HOH HOH . I 5 HOH A 40 540 90 HOH HOH . I 5 HOH A 41 541 50 HOH HOH . I 5 HOH A 42 542 165 HOH HOH . I 5 HOH A 43 543 64 HOH HOH . I 5 HOH A 44 544 143 HOH HOH . I 5 HOH A 45 545 38 HOH HOH . I 5 HOH A 46 546 178 HOH HOH . I 5 HOH A 47 547 159 HOH HOH . I 5 HOH A 48 548 41 HOH HOH . I 5 HOH A 49 549 128 HOH HOH . I 5 HOH A 50 550 52 HOH HOH . I 5 HOH A 51 551 171 HOH HOH . I 5 HOH A 52 552 131 HOH HOH . I 5 HOH A 53 553 9 HOH HOH . I 5 HOH A 54 554 7 HOH HOH . I 5 HOH A 55 555 40 HOH HOH . I 5 HOH A 56 556 33 HOH HOH . I 5 HOH A 57 557 42 HOH HOH . I 5 HOH A 58 558 57 HOH HOH . I 5 HOH A 59 559 4 HOH HOH . I 5 HOH A 60 560 20 HOH HOH . I 5 HOH A 61 561 47 HOH HOH . I 5 HOH A 62 562 176 HOH HOH . I 5 HOH A 63 563 49 HOH HOH . I 5 HOH A 64 564 108 HOH HOH . I 5 HOH A 65 565 76 HOH HOH . I 5 HOH A 66 566 58 HOH HOH . I 5 HOH A 67 567 61 HOH HOH . I 5 HOH A 68 568 138 HOH HOH . I 5 HOH A 69 569 113 HOH HOH . I 5 HOH A 70 570 177 HOH HOH . I 5 HOH A 71 571 142 HOH HOH . I 5 HOH A 72 572 32 HOH HOH . I 5 HOH A 73 573 46 HOH HOH . I 5 HOH A 74 574 93 HOH HOH . I 5 HOH A 75 575 89 HOH HOH . I 5 HOH A 76 576 110 HOH HOH . I 5 HOH A 77 577 158 HOH HOH . I 5 HOH A 78 578 15 HOH HOH . I 5 HOH A 79 579 147 HOH HOH . I 5 HOH A 80 580 148 HOH HOH . I 5 HOH A 81 581 172 HOH HOH . I 5 HOH A 82 582 124 HOH HOH . I 5 HOH A 83 583 173 HOH HOH . I 5 HOH A 84 584 74 HOH HOH . I 5 HOH A 85 585 31 HOH HOH . I 5 HOH A 86 586 136 HOH HOH . I 5 HOH A 87 587 141 HOH HOH . I 5 HOH A 88 588 153 HOH HOH . I 5 HOH A 89 589 126 HOH HOH . I 5 HOH A 90 590 111 HOH HOH . J 5 HOH B 1 401 163 HOH HOH . J 5 HOH B 2 402 166 HOH HOH . J 5 HOH B 3 403 132 HOH HOH . J 5 HOH B 4 404 87 HOH HOH . J 5 HOH B 5 405 65 HOH HOH . J 5 HOH B 6 406 37 HOH HOH . J 5 HOH B 7 407 12 HOH HOH . J 5 HOH B 8 408 162 HOH HOH . J 5 HOH B 9 409 11 HOH HOH . J 5 HOH B 10 410 17 HOH HOH . J 5 HOH B 11 411 27 HOH HOH . J 5 HOH B 12 412 29 HOH HOH . J 5 HOH B 13 413 130 HOH HOH . J 5 HOH B 14 414 168 HOH HOH . J 5 HOH B 15 415 10 HOH HOH . J 5 HOH B 16 416 105 HOH HOH . J 5 HOH B 17 417 69 HOH HOH . J 5 HOH B 18 418 56 HOH HOH . J 5 HOH B 19 419 94 HOH HOH . J 5 HOH B 20 420 117 HOH HOH . J 5 HOH B 21 421 22 HOH HOH . J 5 HOH B 22 422 116 HOH HOH . J 5 HOH B 23 423 100 HOH HOH . J 5 HOH B 24 424 70 HOH HOH . J 5 HOH B 25 425 23 HOH HOH . J 5 HOH B 26 426 102 HOH HOH . J 5 HOH B 27 427 78 HOH HOH . J 5 HOH B 28 428 36 HOH HOH . J 5 HOH B 29 429 45 HOH HOH . J 5 HOH B 30 430 175 HOH HOH . J 5 HOH B 31 431 144 HOH HOH . J 5 HOH B 32 432 107 HOH HOH . J 5 HOH B 33 433 34 HOH HOH . J 5 HOH B 34 434 21 HOH HOH . J 5 HOH B 35 435 72 HOH HOH . J 5 HOH B 36 436 54 HOH HOH . J 5 HOH B 37 437 160 HOH HOH . J 5 HOH B 38 438 60 HOH HOH . J 5 HOH B 39 439 133 HOH HOH . J 5 HOH B 40 440 51 HOH HOH . J 5 HOH B 41 441 80 HOH HOH . J 5 HOH B 42 442 8 HOH HOH . J 5 HOH B 43 443 13 HOH HOH . J 5 HOH B 44 444 120 HOH HOH . J 5 HOH B 45 445 67 HOH HOH . J 5 HOH B 46 446 53 HOH HOH . J 5 HOH B 47 447 55 HOH HOH . J 5 HOH B 48 448 83 HOH HOH . J 5 HOH B 49 449 75 HOH HOH . J 5 HOH B 50 450 161 HOH HOH . J 5 HOH B 51 451 81 HOH HOH . J 5 HOH B 52 452 164 HOH HOH . J 5 HOH B 53 453 115 HOH HOH . J 5 HOH B 54 454 118 HOH HOH . J 5 HOH B 55 455 63 HOH HOH . J 5 HOH B 56 456 86 HOH HOH . J 5 HOH B 57 457 68 HOH HOH . J 5 HOH B 58 458 109 HOH HOH . J 5 HOH B 59 459 151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACN . . . E 4 21.924 5.635 12.36 1 39.47 ? C ACN 403 A 1 HETATM 2 O O ACN . . . E 4 21.687 4.763 11.536 1 42.21 ? O ACN 403 A 1 HETATM 3 C C1 ACN . . . E 4 22.565 5.32 13.683 1 36.41 ? C1 ACN 403 A 1 HETATM 4 C C2 ACN . . . E 4 21.538 7.052 12.061 1 37.69 ? C2 ACN 403 A 1 HETATM 5 H H11 ACN . . . E 4 22.872 6.211 14.162 1 36.95 ? H11 ACN 403 A 1 HETATM 6 H H12 ACN . . . E 4 23.41 4.701 13.526 1 36.95 ? H12 ACN 403 A 1 HETATM 7 H H13 ACN . . . E 4 21.868 4.815 14.299 1 36.95 ? H13 ACN 403 A 1 HETATM 8 H H21 ACN . . . E 4 20.593 7.061 11.582 1 36.95 ? H21 ACN 403 A 1 HETATM 9 H H22 ACN . . . E 4 22.259 7.491 11.423 1 36.95 ? H22 ACN 403 A 1 HETATM 10 H H23 ACN . . . E 4 21.473 7.604 12.962 1 36.95 ? H23 ACN 403 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #