data_6MHF # _model_server_result.job_id BNMD4_u5hGAsZ7whcc35ew _model_server_result.datetime_utc '2024-11-06 03:15:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 6MHF # _exptl.entry_id 6MHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MHF _cell.length_a 83.78 _cell.length_b 83.78 _cell.length_c 141.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 174 n n C1 C2 GOL sing 175 n n C1 H11 GOL sing 176 n n C1 H12 GOL sing 177 n n O1 HO1 GOL sing 178 n n C2 O2 GOL sing 179 n n C2 C3 GOL sing 180 n n C2 H2 GOL sing 181 n n O2 HO2 GOL sing 182 n n C3 O3 GOL sing 183 n n C3 H31 GOL sing 184 n n C3 H32 GOL sing 185 n n O3 HO3 GOL sing 186 n n # _atom_sites.entry_id 6MHF _atom_sites.fract_transf_matrix[1][1] 0.011936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 401 401 GDP GDP . D 4 GOL A 1 402 249 GOL GOL . E 5 HOH A 1 501 142 HOH HOH . E 5 HOH A 2 502 60 HOH HOH . E 5 HOH A 3 503 91 HOH HOH . E 5 HOH A 4 504 173 HOH HOH . E 5 HOH A 5 505 194 HOH HOH . E 5 HOH A 6 506 165 HOH HOH . E 5 HOH A 7 507 7 HOH HOH . E 5 HOH A 8 508 2 HOH HOH . E 5 HOH A 9 509 18 HOH HOH . E 5 HOH A 10 510 23 HOH HOH . E 5 HOH A 11 511 216 HOH HOH . E 5 HOH A 12 512 267 HOH HOH . E 5 HOH A 13 513 76 HOH HOH . E 5 HOH A 14 514 263 HOH HOH . E 5 HOH A 15 515 137 HOH HOH . E 5 HOH A 16 516 190 HOH HOH . E 5 HOH A 17 517 127 HOH HOH . E 5 HOH A 18 518 105 HOH HOH . E 5 HOH A 19 519 49 HOH HOH . E 5 HOH A 20 520 177 HOH HOH . E 5 HOH A 21 521 61 HOH HOH . E 5 HOH A 22 522 43 HOH HOH . E 5 HOH A 23 523 37 HOH HOH . E 5 HOH A 24 524 51 HOH HOH . E 5 HOH A 25 525 90 HOH HOH . E 5 HOH A 26 526 38 HOH HOH . E 5 HOH A 27 527 78 HOH HOH . E 5 HOH A 28 528 72 HOH HOH . E 5 HOH A 29 529 45 HOH HOH . E 5 HOH A 30 530 65 HOH HOH . E 5 HOH A 31 531 53 HOH HOH . E 5 HOH A 32 532 104 HOH HOH . E 5 HOH A 33 533 201 HOH HOH . E 5 HOH A 34 534 31 HOH HOH . E 5 HOH A 35 535 237 HOH HOH . E 5 HOH A 36 536 63 HOH HOH . E 5 HOH A 37 537 9 HOH HOH . E 5 HOH A 38 538 52 HOH HOH . E 5 HOH A 39 539 123 HOH HOH . E 5 HOH A 40 540 22 HOH HOH . E 5 HOH A 41 541 253 HOH HOH . E 5 HOH A 42 542 174 HOH HOH . E 5 HOH A 43 543 80 HOH HOH . E 5 HOH A 44 544 154 HOH HOH . E 5 HOH A 45 545 139 HOH HOH . E 5 HOH A 46 546 133 HOH HOH . E 5 HOH A 47 547 12 HOH HOH . E 5 HOH A 48 548 103 HOH HOH . E 5 HOH A 49 549 75 HOH HOH . E 5 HOH A 50 550 150 HOH HOH . E 5 HOH A 51 551 57 HOH HOH . E 5 HOH A 52 552 110 HOH HOH . E 5 HOH A 53 553 211 HOH HOH . E 5 HOH A 54 554 128 HOH HOH . E 5 HOH A 55 555 401 HOH HOH . E 5 HOH A 56 556 77 HOH HOH . E 5 HOH A 57 557 94 HOH HOH . E 5 HOH A 58 558 79 HOH HOH . E 5 HOH A 59 559 151 HOH HOH . E 5 HOH A 60 560 189 HOH HOH . E 5 HOH A 61 561 124 HOH HOH . E 5 HOH A 62 562 20 HOH HOH . E 5 HOH A 63 563 21 HOH HOH . E 5 HOH A 64 564 30 HOH HOH . E 5 HOH A 65 565 24 HOH HOH . E 5 HOH A 66 566 213 HOH HOH . E 5 HOH A 67 567 50 HOH HOH . E 5 HOH A 68 568 102 HOH HOH . E 5 HOH A 69 569 218 HOH HOH . E 5 HOH A 70 570 134 HOH HOH . E 5 HOH A 71 571 44 HOH HOH . E 5 HOH A 72 572 132 HOH HOH . E 5 HOH A 73 573 126 HOH HOH . E 5 HOH A 74 574 14 HOH HOH . E 5 HOH A 75 575 71 HOH HOH . E 5 HOH A 76 576 10 HOH HOH . E 5 HOH A 77 577 212 HOH HOH . E 5 HOH A 78 578 243 HOH HOH . E 5 HOH A 79 579 222 HOH HOH . E 5 HOH A 80 580 114 HOH HOH . E 5 HOH A 81 581 156 HOH HOH . E 5 HOH A 82 582 28 HOH HOH . E 5 HOH A 83 583 145 HOH HOH . E 5 HOH A 84 584 55 HOH HOH . E 5 HOH A 85 585 119 HOH HOH . E 5 HOH A 86 586 29 HOH HOH . E 5 HOH A 87 587 111 HOH HOH . E 5 HOH A 88 588 209 HOH HOH . E 5 HOH A 89 589 215 HOH HOH . E 5 HOH A 90 590 240 HOH HOH . E 5 HOH A 91 591 34 HOH HOH . E 5 HOH A 92 592 95 HOH HOH . E 5 HOH A 93 593 187 HOH HOH . E 5 HOH A 94 594 47 HOH HOH . E 5 HOH A 95 595 101 HOH HOH . E 5 HOH A 96 596 227 HOH HOH . E 5 HOH A 97 597 225 HOH HOH . E 5 HOH A 98 598 81 HOH HOH . E 5 HOH A 99 599 42 HOH HOH . E 5 HOH A 100 600 64 HOH HOH . E 5 HOH A 101 601 54 HOH HOH . E 5 HOH A 102 602 166 HOH HOH . E 5 HOH A 103 603 17 HOH HOH . E 5 HOH A 104 604 32 HOH HOH . E 5 HOH A 105 605 116 HOH HOH . E 5 HOH A 106 606 19 HOH HOH . E 5 HOH A 107 607 152 HOH HOH . E 5 HOH A 108 608 158 HOH HOH . E 5 HOH A 109 609 68 HOH HOH . E 5 HOH A 110 610 97 HOH HOH . E 5 HOH A 111 611 141 HOH HOH . E 5 HOH A 112 612 204 HOH HOH . E 5 HOH A 113 613 96 HOH HOH . E 5 HOH A 114 614 87 HOH HOH . E 5 HOH A 115 615 15 HOH HOH . E 5 HOH A 116 616 118 HOH HOH . E 5 HOH A 117 617 167 HOH HOH . E 5 HOH A 118 618 27 HOH HOH . E 5 HOH A 119 619 245 HOH HOH . E 5 HOH A 120 620 182 HOH HOH . E 5 HOH A 121 621 88 HOH HOH . E 5 HOH A 122 622 198 HOH HOH . E 5 HOH A 123 623 130 HOH HOH . E 5 HOH A 124 624 206 HOH HOH . E 5 HOH A 125 625 228 HOH HOH . E 5 HOH A 126 626 84 HOH HOH . E 5 HOH A 127 627 178 HOH HOH . E 5 HOH A 128 628 207 HOH HOH . E 5 HOH A 129 629 41 HOH HOH . E 5 HOH A 130 630 264 HOH HOH . E 5 HOH A 131 631 67 HOH HOH . E 5 HOH A 132 632 39 HOH HOH . E 5 HOH A 133 633 241 HOH HOH . E 5 HOH A 134 634 107 HOH HOH . E 5 HOH A 135 635 117 HOH HOH . E 5 HOH A 136 636 66 HOH HOH . E 5 HOH A 137 637 147 HOH HOH . E 5 HOH A 138 638 93 HOH HOH . E 5 HOH A 139 639 136 HOH HOH . E 5 HOH A 140 640 144 HOH HOH . E 5 HOH A 141 641 26 HOH HOH . E 5 HOH A 142 642 242 HOH HOH . E 5 HOH A 143 643 69 HOH HOH . E 5 HOH A 144 644 210 HOH HOH . E 5 HOH A 145 645 261 HOH HOH . E 5 HOH A 146 646 153 HOH HOH . E 5 HOH A 147 647 140 HOH HOH . E 5 HOH A 148 648 214 HOH HOH . E 5 HOH A 149 649 161 HOH HOH . E 5 HOH A 150 650 186 HOH HOH . E 5 HOH A 151 651 8 HOH HOH . E 5 HOH A 152 652 171 HOH HOH . E 5 HOH A 153 653 262 HOH HOH . E 5 HOH A 154 654 238 HOH HOH . E 5 HOH A 155 655 250 HOH HOH . E 5 HOH A 156 656 200 HOH HOH . E 5 HOH A 157 657 86 HOH HOH . E 5 HOH A 158 658 35 HOH HOH . E 5 HOH A 159 659 159 HOH HOH . E 5 HOH A 160 660 1 HOH HOH . E 5 HOH A 161 661 108 HOH HOH . E 5 HOH A 162 662 121 HOH HOH . E 5 HOH A 163 663 191 HOH HOH . E 5 HOH A 164 664 89 HOH HOH . E 5 HOH A 165 665 125 HOH HOH . E 5 HOH A 166 666 180 HOH HOH . E 5 HOH A 167 667 99 HOH HOH . E 5 HOH A 168 668 25 HOH HOH . E 5 HOH A 169 669 235 HOH HOH . E 5 HOH A 170 670 115 HOH HOH . E 5 HOH A 171 671 74 HOH HOH . E 5 HOH A 172 672 197 HOH HOH . E 5 HOH A 173 673 184 HOH HOH . E 5 HOH A 174 674 70 HOH HOH . E 5 HOH A 175 675 40 HOH HOH . E 5 HOH A 176 676 268 HOH HOH . E 5 HOH A 177 677 192 HOH HOH . E 5 HOH A 178 678 146 HOH HOH . E 5 HOH A 179 679 113 HOH HOH . E 5 HOH A 180 680 162 HOH HOH . E 5 HOH A 181 681 230 HOH HOH . E 5 HOH A 182 682 6 HOH HOH . E 5 HOH A 183 683 62 HOH HOH . E 5 HOH A 184 684 155 HOH HOH . E 5 HOH A 185 685 231 HOH HOH . E 5 HOH A 186 686 205 HOH HOH . E 5 HOH A 187 687 92 HOH HOH . E 5 HOH A 188 688 36 HOH HOH . E 5 HOH A 189 689 224 HOH HOH . E 5 HOH A 190 690 251 HOH HOH . E 5 HOH A 191 691 252 HOH HOH . E 5 HOH A 192 692 106 HOH HOH . E 5 HOH A 193 693 3 HOH HOH . E 5 HOH A 194 694 164 HOH HOH . E 5 HOH A 195 695 163 HOH HOH . E 5 HOH A 196 696 255 HOH HOH . E 5 HOH A 197 697 83 HOH HOH . E 5 HOH A 198 698 265 HOH HOH . E 5 HOH A 199 699 223 HOH HOH . E 5 HOH A 200 700 129 HOH HOH . E 5 HOH A 201 701 100 HOH HOH . E 5 HOH A 202 702 122 HOH HOH . E 5 HOH A 203 703 195 HOH HOH . E 5 HOH A 204 704 172 HOH HOH . E 5 HOH A 205 705 112 HOH HOH . E 5 HOH A 206 706 258 HOH HOH . E 5 HOH A 207 707 5 HOH HOH . E 5 HOH A 208 708 149 HOH HOH . E 5 HOH A 209 709 131 HOH HOH . E 5 HOH A 210 710 259 HOH HOH . E 5 HOH A 211 711 73 HOH HOH . E 5 HOH A 212 712 233 HOH HOH . E 5 HOH A 213 713 254 HOH HOH . E 5 HOH A 214 714 208 HOH HOH . E 5 HOH A 215 715 135 HOH HOH . E 5 HOH A 216 716 217 HOH HOH . E 5 HOH A 217 717 229 HOH HOH . E 5 HOH A 218 718 220 HOH HOH . E 5 HOH A 219 719 226 HOH HOH . E 5 HOH A 220 720 160 HOH HOH . E 5 HOH A 221 721 56 HOH HOH . E 5 HOH A 222 722 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -22.816 -20.104 -13.703 1 30.66 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . D 4 -22.437 -19.544 -14.926 1 29.15 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . D 4 -21.77 -21.192 -13.351 1 44.1 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . D 4 -20.563 -20.994 -14.003 1 33.72 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . D 4 -21.609 -21.111 -11.814 1 46.85 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . D 4 -22.781 -21.628 -11.256 1 52.06 ? O3 GOL 402 A 1 HETATM 7 H H11 GOL . . . D 4 -23.698 -20.507 -13.734 1 36.85 ? H11 GOL 402 A 1 HETATM 8 H H12 GOL . . . D 4 -22.848 -19.449 -12.988 1 36.85 ? H12 GOL 402 A 1 HETATM 9 H HO1 GOL . . . D 4 -22.175 -18.753 -14.759 1 35.04 ? HO1 GOL 402 A 1 HETATM 10 H H2 GOL . . . D 4 -22.089 -22.064 -13.631 1 52.98 ? H2 GOL 402 A 1 HETATM 11 H H31 GOL . . . D 4 -21.438 -20.19 -11.564 1 56.28 ? H31 GOL 402 A 1 HETATM 12 H H32 GOL . . . D 4 -20.812 -21.599 -11.555 1 56.28 ? H32 GOL 402 A 1 HETATM 13 H HO3 GOL . . . D 4 -22.561 -22.331 -10.833 1 62.53 ? HO3 GOL 402 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #