data_6MHM # _model_server_result.job_id ccEAyefVQM9-UWLXK45Dfw _model_server_result.datetime_utc '2024-11-22 02:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":406}' # _entry.id 6MHM # _exptl.entry_id 6MHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 120.73 _cell.angle_gamma 90 _cell.entry_id 6MHM _cell.length_a 153.718 _cell.length_b 68.65 _cell.length_c 98.386 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J,K,L,M,N,O,P,AA,BA 1 1 C,D,G,H,Q,R,S,T,U,V,W,X,Y,Z,CA,DA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 T N N ? 6 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG B 401 NAG 3 n E NAG 2 E 2 NAG B 402 NAG 3 n E NAG 3 E 3 NAG B 403 NAG 4 n F NAG 1 F 1 NAG B 404 NAG 4 n F NAG 2 F 2 NAG B 405 NAG 3 n G NAG 1 G 1 NAG D 401 NAG 3 n G NAG 2 G 2 NAG D 402 NAG 3 n G NAG 3 G 3 NAG D 403 NAG 4 n H NAG 1 H 1 NAG D 405 NAG 4 n H NAG 2 H 2 NAG D 406 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 31 1_555 B SG CYS 198 B CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 246 B CYS 388 1_555 B SG CYS 250 B CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 20 C CYS 31 1_555 D SG CYS 198 D CYS 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 D SG CYS 246 D CYS 388 1_555 D SG CYS 250 D CYS 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B SG CYS 1 B CYS 143 1_555 M C07 JRY . B JRY 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale2 B ND2 ASN 31 B ASN 173 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 B ND2 ASN 117 B ASN 259 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 144 B ASN 286 1_555 L C1 NAG . B NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 D SG CYS 1 D CYS 143 1_555 V C07 JRY . D JRY 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale6 D ND2 ASN 31 D ASN 173 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 D ND2 ASN 117 D ASN 259 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale8 D ND2 ASN 144 D ASN 286 1_555 T C1 NAG . D NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale9 D ND2 ASN 200 D ASN 342 1_555 U C1 NAG . D NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale10 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale11 E O4 NAG . E NAG 2 1_555 E C1 NAG . E NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale12 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale14 G O4 NAG . G NAG 2 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale15 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6MHM _atom_sites.fract_transf_matrix[1][1] 0.006505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003867 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 SO4 A 1 201 413 SO4 SO4 . J 5 SO4 A 1 202 418 SO4 SO4 . K 5 SO4 A 1 203 421 SO4 SO4 . L 6 NAG B 1 406 406 NAG NAG . M 7 JRY B 1 407 1 JRY CAR . N 5 SO4 B 1 408 415 SO4 SO4 . O 5 SO4 B 1 409 416 SO4 SO4 . P 5 SO4 B 1 410 420 SO4 SO4 . Q 5 SO4 C 1 201 411 SO4 SO4 . R 5 SO4 C 1 202 419 SO4 SO4 . S 5 SO4 C 1 203 422 SO4 SO4 . T 6 NAG D 1 404 404 NAG NAG . U 6 NAG D 1 407 407 NAG NAG . V 7 JRY D 1 408 1 JRY CAR . W 5 SO4 D 1 409 410 SO4 SO4 . X 5 SO4 D 1 410 412 SO4 SO4 . Y 5 SO4 D 1 411 414 SO4 SO4 . Z 5 SO4 D 1 412 417 SO4 SO4 . AA 8 HOH A 1 301 47 HOH HOH . AA 8 HOH A 2 302 44 HOH HOH . AA 8 HOH A 3 303 64 HOH HOH . AA 8 HOH A 4 304 28 HOH HOH . AA 8 HOH A 5 305 27 HOH HOH . AA 8 HOH A 6 306 63 HOH HOH . AA 8 HOH A 7 307 51 HOH HOH . AA 8 HOH A 8 308 4 HOH HOH . AA 8 HOH A 9 309 70 HOH HOH . AA 8 HOH A 10 310 68 HOH HOH . AA 8 HOH A 11 311 39 HOH HOH . AA 8 HOH A 12 312 69 HOH HOH . AA 8 HOH A 13 313 15 HOH HOH . BA 8 HOH B 1 501 42 HOH HOH . BA 8 HOH B 2 502 23 HOH HOH . BA 8 HOH B 3 503 67 HOH HOH . BA 8 HOH B 4 504 52 HOH HOH . BA 8 HOH B 5 505 73 HOH HOH . BA 8 HOH B 6 506 75 HOH HOH . BA 8 HOH B 7 507 79 HOH HOH . BA 8 HOH B 8 508 20 HOH HOH . BA 8 HOH B 9 509 46 HOH HOH . BA 8 HOH B 10 510 2 HOH HOH . BA 8 HOH B 11 511 35 HOH HOH . BA 8 HOH B 12 512 38 HOH HOH . BA 8 HOH B 13 513 25 HOH HOH . BA 8 HOH B 14 514 61 HOH HOH . BA 8 HOH B 15 515 53 HOH HOH . BA 8 HOH B 16 516 34 HOH HOH . BA 8 HOH B 17 517 30 HOH HOH . BA 8 HOH B 18 518 54 HOH HOH . BA 8 HOH B 19 519 60 HOH HOH . BA 8 HOH B 20 520 18 HOH HOH . BA 8 HOH B 21 521 72 HOH HOH . BA 8 HOH B 22 522 14 HOH HOH . BA 8 HOH B 23 523 77 HOH HOH . BA 8 HOH B 24 524 50 HOH HOH . BA 8 HOH B 25 525 26 HOH HOH . BA 8 HOH B 26 526 55 HOH HOH . BA 8 HOH B 27 527 13 HOH HOH . BA 8 HOH B 28 528 56 HOH HOH . BA 8 HOH B 29 529 66 HOH HOH . CA 8 HOH C 1 301 5 HOH HOH . CA 8 HOH C 2 302 62 HOH HOH . CA 8 HOH C 3 303 45 HOH HOH . CA 8 HOH C 4 304 41 HOH HOH . CA 8 HOH C 5 305 1 HOH HOH . CA 8 HOH C 6 306 19 HOH HOH . CA 8 HOH C 7 307 36 HOH HOH . CA 8 HOH C 8 308 33 HOH HOH . CA 8 HOH C 9 309 49 HOH HOH . CA 8 HOH C 10 310 76 HOH HOH . CA 8 HOH C 11 311 78 HOH HOH . CA 8 HOH C 12 312 7 HOH HOH . DA 8 HOH D 1 501 71 HOH HOH . DA 8 HOH D 2 502 48 HOH HOH . DA 8 HOH D 3 503 65 HOH HOH . DA 8 HOH D 4 504 57 HOH HOH . DA 8 HOH D 5 505 17 HOH HOH . DA 8 HOH D 6 506 16 HOH HOH . DA 8 HOH D 7 507 40 HOH HOH . DA 8 HOH D 8 508 10 HOH HOH . DA 8 HOH D 9 509 3 HOH HOH . DA 8 HOH D 10 510 58 HOH HOH . DA 8 HOH D 11 511 21 HOH HOH . DA 8 HOH D 12 512 43 HOH HOH . DA 8 HOH D 13 513 11 HOH HOH . DA 8 HOH D 14 514 8 HOH HOH . DA 8 HOH D 15 515 29 HOH HOH . DA 8 HOH D 16 516 22 HOH HOH . DA 8 HOH D 17 517 37 HOH HOH . DA 8 HOH D 18 518 32 HOH HOH . DA 8 HOH D 19 519 9 HOH HOH . DA 8 HOH D 20 520 24 HOH HOH . DA 8 HOH D 21 521 74 HOH HOH . DA 8 HOH D 22 522 12 HOH HOH . DA 8 HOH D 23 523 59 HOH HOH . DA 8 HOH D 24 524 6 HOH HOH . DA 8 HOH D 25 525 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 6 -8.158 0.389 1.907 1 73.73 ? C1 NAG 406 B 1 HETATM 2 C C2 NAG . . . L 6 -7.548 -0.694 1.012 1 81.61 ? C2 NAG 406 B 1 HETATM 3 C C3 NAG . . . L 6 -8.551 -1.141 -0.047 1 79.45 ? C3 NAG 406 B 1 HETATM 4 C C4 NAG . . . L 6 -9.856 -1.572 0.611 1 79.65 ? C4 NAG 406 B 1 HETATM 5 C C5 NAG . . . L 6 -10.378 -0.467 1.527 1 80.87 ? C5 NAG 406 B 1 HETATM 6 C C6 NAG . . . L 6 -11.605 -0.88 2.304 1 75.19 ? C6 NAG 406 B 1 HETATM 7 C C7 NAG . . . L 6 -6.207 0.779 -0.458 1 84.41 ? C7 NAG 406 B 1 HETATM 8 C C8 NAG . . . L 6 -4.828 1.071 -0.973 1 78.55 ? C8 NAG 406 B 1 HETATM 9 N N2 NAG . . . L 6 -6.304 -0.247 0.396 1 80.16 ? N2 NAG 406 B 1 HETATM 10 O O3 NAG . . . L 6 -8.005 -2.218 -0.799 1 84.69 ? O3 NAG 406 B 1 HETATM 11 O O4 NAG . . . L 6 -10.831 -1.859 -0.384 1 79.69 ? O4 NAG 406 B 1 HETATM 12 O O5 NAG . . . L 6 -9.377 -0.105 2.491 1 75.48 ? O5 NAG 406 B 1 HETATM 13 O O6 NAG . . . L 6 -12.175 0.219 3.002 1 70.52 ? O6 NAG 406 B 1 HETATM 14 O O7 NAG . . . L 6 -7.181 1.443 -0.804 1 84.05 ? O7 NAG 406 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #