data_6MHR # _model_server_result.job_id vo_Pim9F-Wlkhn2REyxIeQ _model_server_result.datetime_utc '2024-10-10 23:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mhr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6MHR # _exptl.entry_id 6MHR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MHR _cell.length_a 77.148 _cell.length_b 192.058 _cell.length_c 344.581 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MHR _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,I,L,N,O,R 1 1 C,D,F,H,J,K,M,P,Q,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 4 4 1 FUC NAG C1 O1 . O3 HO3 . sing 4 ? 4 5 1 FUC NAG C1 O1 . O6 HO6 . sing 5 ? 5 2 1 FUC NAG C1 O1 . O3 HO3 . sing 6 ? 5 3 1 NAG NAG C1 O1 . O4 HO4 . sing 7 ? 5 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 G 1 NAG F 201 NAG 4 n G NAG 2 G 2 NAG F 202 NAG 4 n G BMA 3 G 3 BMA F 203 BMA 4 n G FUC 4 G 4 FUC F 205 FUC 4 n G FUC 5 G 5 FUC F 204 FUC 5 n H NAG 1 H 1 NAG C 201 NAG 5 n H FUC 2 H 2 FUC C 203 FUC 5 n H NAG 3 H 3 NAG C 202 NAG 5 n H FUC 4 H 4 FUC C 204 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 D CYS 22 1_555 A SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? disulf ? disulf2 A SG CYS 148 D CYS 148 1_555 A SG CYS 204 D CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 23 E CYS 23 1_555 B SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? disulf ? disulf4 B SG CYS 136 E CYS 136 1_555 B SG CYS 196 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf6 C SG CYS 148 A CYS 148 1_555 C SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 23 B CYS 23 1_555 D SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf8 D SG CYS 136 B CYS 136 1_555 D SG CYS 196 B CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf9 E SG CYS 4 F CYS 28 1_555 E SG CYS 13 F CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 E SG CYS 7 F CYS 31 1_555 E SG CYS 21 F CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf11 E SG CYS 24 F CYS 48 1_555 E SG CYS 38 F CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf12 E SG CYS 41 F CYS 65 1_555 E SG CYS 54 F CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf13 E SG CYS 44 F CYS 68 1_555 E SG CYS 62 F CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf14 E SG CYS 64 F CYS 88 1_555 E SG CYS 78 F CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf15 E SG CYS 70 F CYS 94 1_555 E SG CYS 75 F CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf16 E SG CYS 82 F CYS 106 1_555 E SG CYS 93 F CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf17 E SG CYS 96 F CYS 120 1_555 E SG CYS 109 F CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf18 E SG CYS 115 F CYS 139 1_555 E SG CYS 134 F CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf19 F SG CYS 4 C CYS 28 1_555 F SG CYS 13 C CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf20 F SG CYS 7 C CYS 31 1_555 F SG CYS 21 C CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 F SG CYS 24 C CYS 48 1_555 F SG CYS 38 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf22 F SG CYS 41 C CYS 65 1_555 F SG CYS 54 C CYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf23 F SG CYS 44 C CYS 68 1_555 F SG CYS 62 C CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf24 F SG CYS 64 C CYS 88 1_555 F SG CYS 78 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf25 F SG CYS 70 C CYS 94 1_555 F SG CYS 75 C CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf26 F SG CYS 82 C CYS 106 1_555 F SG CYS 93 C CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf27 F SG CYS 96 C CYS 120 1_555 F SG CYS 109 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf28 F SG CYS 115 C CYS 139 1_555 F SG CYS 134 C CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 E ND2 ASN 125 F ASN 149 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.596 ? covale ? covale2 F ND2 ASN 125 C ASN 149 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale3 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 G O3 NAG . G NAG 1 1_555 G C1 FUC . G FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale5 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale7 H O3 NAG . H NAG 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale9 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MHR _atom_sites.fract_transf_matrix[1][1] 0.012962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 GOL D 1 301 4 GOL GOL . J 7 MLI A 1 301 5 MLI MLI . K 7 MLI B 1 301 3 MLI MLI . L 8 EPE F 1 206 2 EPE EPE . M 8 EPE C 1 205 1 EPE EPE . N 9 HOH D 1 401 5 HOH HOH . N 9 HOH D 2 402 8 HOH HOH . O 9 HOH E 1 301 3 HOH HOH . O 9 HOH E 2 302 6 HOH HOH . O 9 HOH E 3 303 4 HOH HOH . O 9 HOH E 4 304 13 HOH HOH . O 9 HOH E 5 305 15 HOH HOH . P 9 HOH A 1 401 7 HOH HOH . Q 9 HOH B 1 401 2 HOH HOH . Q 9 HOH B 2 402 12 HOH HOH . Q 9 HOH B 3 403 14 HOH HOH . Q 9 HOH B 4 404 1 HOH HOH . R 9 HOH F 1 301 11 HOH HOH . S 9 HOH C 1 301 9 HOH HOH . S 9 HOH C 2 302 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . J 7 10.019 -47.147 -25.276 1 129.92 ? C1 MLI 301 A 1 HETATM 2 C C2 MLI . . . J 7 9.709 -47.731 -26.66 1 128.31 ? C2 MLI 301 A 1 HETATM 3 C C3 MLI . . . J 7 9.937 -48.247 -24.213 1 131.89 ? C3 MLI 301 A 1 HETATM 4 O O6 MLI . . . J 7 8.915 -47.111 -27.43 1 125.81 ? O6 MLI 301 A 1 HETATM 5 O O7 MLI . . . J 7 10.238 -48.823 -27.027 1 110.52 ? O7 MLI 301 A 1 HETATM 6 O O8 MLI . . . J 7 10.998 -48.726 -23.735 1 127.27 ? O8 MLI 301 A 1 HETATM 7 O O9 MLI . . . J 7 8.818 -48.68 -23.813 1 127.13 ? O9 MLI 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 7 #