data_6MI0 # _model_server_result.job_id Ukxhpt5d9mjdtwGQwU7-bg _model_server_result.datetime_utc '2024-12-03 15:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6MI0 # _exptl.entry_id 6MI0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MI0 _cell.length_a 151.861 _cell.length_b 151.861 _cell.length_c 67.246 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 394 A CYS 394 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 C O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 6MI0 _atom_sites.fract_transf_matrix[1][1] 0.006585 _atom_sites.fract_transf_matrix[1][2] 0.003802 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007604 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014871 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 480 HEM HEM . C 3 HOH A 1 601 80 HOH HOH . C 3 HOH A 2 602 73 HOH HOH . C 3 HOH A 3 603 70 HOH HOH . C 3 HOH A 4 604 18 HOH HOH . C 3 HOH A 5 605 43 HOH HOH . C 3 HOH A 6 606 24 HOH HOH . C 3 HOH A 7 607 58 HOH HOH . C 3 HOH A 8 608 10 HOH HOH . C 3 HOH A 9 609 4 HOH HOH . C 3 HOH A 10 610 23 HOH HOH . C 3 HOH A 11 611 6 HOH HOH . C 3 HOH A 12 612 52 HOH HOH . C 3 HOH A 13 613 19 HOH HOH . C 3 HOH A 14 614 16 HOH HOH . C 3 HOH A 15 615 49 HOH HOH . C 3 HOH A 16 616 65 HOH HOH . C 3 HOH A 17 617 76 HOH HOH . C 3 HOH A 18 618 71 HOH HOH . C 3 HOH A 19 619 74 HOH HOH . C 3 HOH A 20 620 15 HOH HOH . C 3 HOH A 21 621 28 HOH HOH . C 3 HOH A 22 622 64 HOH HOH . C 3 HOH A 23 623 62 HOH HOH . C 3 HOH A 24 624 45 HOH HOH . C 3 HOH A 25 625 37 HOH HOH . C 3 HOH A 26 626 47 HOH HOH . C 3 HOH A 27 627 48 HOH HOH . C 3 HOH A 28 628 12 HOH HOH . C 3 HOH A 29 629 5 HOH HOH . C 3 HOH A 30 630 86 HOH HOH . C 3 HOH A 31 631 38 HOH HOH . C 3 HOH A 32 632 35 HOH HOH . C 3 HOH A 33 633 66 HOH HOH . C 3 HOH A 34 634 14 HOH HOH . C 3 HOH A 35 635 53 HOH HOH . C 3 HOH A 36 636 32 HOH HOH . C 3 HOH A 37 637 79 HOH HOH . C 3 HOH A 38 638 22 HOH HOH . C 3 HOH A 39 639 9 HOH HOH . C 3 HOH A 40 640 11 HOH HOH . C 3 HOH A 41 641 51 HOH HOH . C 3 HOH A 42 642 7 HOH HOH . C 3 HOH A 43 643 30 HOH HOH . C 3 HOH A 44 644 17 HOH HOH . C 3 HOH A 45 645 3 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 68 HOH HOH . C 3 HOH A 48 648 67 HOH HOH . C 3 HOH A 49 649 60 HOH HOH . C 3 HOH A 50 650 75 HOH HOH . C 3 HOH A 51 651 50 HOH HOH . C 3 HOH A 52 652 31 HOH HOH . C 3 HOH A 53 653 41 HOH HOH . C 3 HOH A 54 654 26 HOH HOH . C 3 HOH A 55 655 25 HOH HOH . C 3 HOH A 56 656 42 HOH HOH . C 3 HOH A 57 657 20 HOH HOH . C 3 HOH A 58 658 21 HOH HOH . C 3 HOH A 59 659 83 HOH HOH . C 3 HOH A 60 660 56 HOH HOH . C 3 HOH A 61 661 77 HOH HOH . C 3 HOH A 62 662 84 HOH HOH . C 3 HOH A 63 663 57 HOH HOH . C 3 HOH A 64 664 13 HOH HOH . C 3 HOH A 65 665 34 HOH HOH . C 3 HOH A 66 666 81 HOH HOH . C 3 HOH A 67 667 27 HOH HOH . C 3 HOH A 68 668 78 HOH HOH . C 3 HOH A 69 669 29 HOH HOH . C 3 HOH A 70 670 82 HOH HOH . C 3 HOH A 71 671 61 HOH HOH . C 3 HOH A 72 672 59 HOH HOH . C 3 HOH A 73 673 85 HOH HOH . C 3 HOH A 74 674 54 HOH HOH . C 3 HOH A 75 675 2 HOH HOH . C 3 HOH A 76 676 36 HOH HOH . C 3 HOH A 77 677 44 HOH HOH . C 3 HOH A 78 678 55 HOH HOH . C 3 HOH A 79 679 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -54.577 -23.636 3.464 1 77.16 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -54.847 -20.013 6.632 1 64.04 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -57.064 -22.976 9.822 1 69.01 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -56.857 -26.558 6.575 1 63.57 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -54.469 -22.414 4.068 1 74.48 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -53.895 -21.285 3.448 1 78.22 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -53.981 -20.257 4.329 1 72.48 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -54.585 -20.752 5.504 1 65.24 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -53.49 -18.851 4.088 1 68.38 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -53.345 -21.21 2.04 1 75.6 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -51.83 -21.423 2.003 1 81.07 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -51.315 -21.214 0.599 1 76.97 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -52.001 -20.602 -0.249 1 68.04 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -50.189 -21.657 0.279 1 86.96 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -55.486 -20.549 7.756 1 71.79 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -55.737 -19.751 8.898 1 75.75 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -56.35 -20.535 9.821 1 71.11 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -56.473 -21.88 9.193 1 63.03 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -55.377 -18.298 9.074 1 78.43 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -56.782 -20.062 11.152 1 66.46 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -57.433 -20.851 11.995 1 74.6 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -57.204 -24.217 9.214 1 63.31 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -57.827 -25.344 9.779 1 58.55 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -57.772 -26.366 8.842 1 65.07 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -57.1 -25.84 7.711 1 59.8 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -58.442 -25.413 11.152 1 59.43 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -58.252 -27.762 8.955 1 67.99 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -58.714 -28.263 10.099 1 73.67 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -56.209 -26.006 5.477 1 71.47 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -55.949 -26.806 4.277 1 70.98 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -55.316 -25.994 3.414 1 70.93 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -55.192 -24.703 4.092 1 70.98 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -56.329 -28.248 4.056 1 75.31 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -54.829 -26.334 2.028 1 75.1 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -55.782 -25.746 0.985 1 75.31 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -55.226 -25.944 -0.405 1 82.95 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -55.954 -26.392 -1.321 1 77.79 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -54.035 -25.642 -0.651 1 100.35 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -54.888 -22.077 5.331 1 75.03 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -55.937 -21.799 7.961 1 70.54 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -56.771 -24.537 7.962 1 58.6 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -55.737 -24.761 5.316 1 72.94 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -55.813 -23.353 6.544 1 68.92 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #