data_6MI6 # _model_server_result.job_id URL7Ad3pCghb09RguAz0lg _model_server_result.datetime_utc '2024-11-16 06:58:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 6MI6 # _exptl.entry_id 6MI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.553 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 6MI6 _cell.length_a 83.703 _cell.length_b 75.145 _cell.length_c 86.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H 2 1 C,I,J,K 3 1 D,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 85 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H30 N6 O10 P2 S2' _chem_comp.formula_weight 628.553 _chem_comp.id JSJ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MI6 _atom_sites.fract_transf_matrix[1][1] 0.011947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 601 1 SO4 SO4 . F 3 JSJ A 1 602 285 JSJ UNL . G 2 SO4 A 1 603 1 SO4 SO4 . H 3 JSJ B 1 601 285 JSJ UNL . I 2 SO4 C 1 601 1 SO4 SO4 . J 4 ADP C 1 602 285 ADP ADP . K 2 SO4 C 1 603 1 SO4 SO4 . L 4 ADP D 1 601 285 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' JSJ . . . H 3 12.23 11.374 28.237 1 89.31 ? C1' JSJ 601 B 1 HETATM 2 C C10 JSJ . . . H 3 9.873 7.782 20.374 1 165.1 ? C10 JSJ 601 B 1 HETATM 3 C C11 JSJ . . . H 3 10.544 8.689 21.383 1 168.32 ? C11 JSJ 601 B 1 HETATM 4 C C12 JSJ . . . H 3 11.353 9.587 20.791 1 170.79 ? C12 JSJ 601 B 1 HETATM 5 C C13 JSJ . . . H 3 11.909 10.209 21.63 1 172.22 ? C13 JSJ 601 B 1 HETATM 6 C C14 JSJ . . . H 3 11.371 9.406 19.29 1 170.89 ? C14 JSJ 601 B 1 HETATM 7 C C15 JSJ . . . H 3 10.684 10.599 18.637 1 172.45 ? C15 JSJ 601 B 1 HETATM 8 C C16 JSJ . . . H 3 12.771 9.214 18.717 1 173.53 ? C16 JSJ 601 B 1 HETATM 9 C C17 JSJ . . . H 3 9.921 6.293 20.693 1 162.39 ? C17 JSJ 601 B 1 HETATM 10 C C18 JSJ . . . H 3 8.412 8.182 20.276 1 166.59 ? C18 JSJ 601 B 1 HETATM 11 C C2 JSJ . . . H 3 8.045 12.424 29.552 1 83.79 ? C2 JSJ 601 B 1 HETATM 12 C C2' JSJ . . . H 3 11.224 10.285 27.903 1 94.23 ? C2' JSJ 601 B 1 HETATM 13 C C3' JSJ . . . H 3 11.139 10.314 26.41 1 96.25 ? C3' JSJ 601 B 1 HETATM 14 C C4 JSJ . . . H 3 10.3 12.778 29.044 1 79.39 ? C4 JSJ 601 B 1 HETATM 15 C C4' JSJ . . . H 3 12.488 10.843 25.98 1 93.87 ? C4' JSJ 601 B 1 HETATM 16 C C5 JSJ . . . H 3 10.134 14.183 29.402 1 79.66 ? C5 JSJ 601 B 1 HETATM 17 C C5' JSJ . . . H 3 12.299 11.763 24.795 1 99.46 ? C5' JSJ 601 B 1 HETATM 18 C C6 JSJ . . . H 3 8.796 14.61 29.842 1 81.67 ? C6 JSJ 601 B 1 HETATM 19 C C8 JSJ . . . H 3 12.171 13.815 28.794 1 83.13 ? C8 JSJ 601 B 1 HETATM 20 N N1 JSJ . . . H 3 7.821 13.693 29.894 1 83.06 ? N1 JSJ 601 B 1 HETATM 21 N N10 JSJ . . . H 3 10.481 8.233 19.111 1 166.3 ? N10 JSJ 601 B 1 HETATM 22 N N3 JSJ . . . H 3 9.232 11.969 29.147 1 82.17 ? N3 JSJ 601 B 1 HETATM 23 N N6 JSJ . . . H 3 8.55 15.892 30.185 1 88.64 ? N6 JSJ 601 B 1 HETATM 24 N N7 JSJ . . . H 3 11.322 14.77 29.228 1 82.34 ? N7 JSJ 601 B 1 HETATM 25 N N9 JSJ . . . H 3 11.567 12.626 28.68 1 84.1 ? N9 JSJ 601 B 1 HETATM 26 O O1A JSJ . . . H 3 14.521 13.894 26.123 1 93.13 ? O1A JSJ 601 B 1 HETATM 27 O O1B JSJ . . . H 3 15.662 12.733 22.07 1 164.78 ? O1B JSJ 601 B 1 HETATM 28 O O2' JSJ . . . H 3 11.699 8.989 28.275 1 93.1 ? O2' JSJ 601 B 1 HETATM 29 O O2A JSJ . . . H 3 12.551 14.655 24.557 1 97.2 ? O2A JSJ 601 B 1 HETATM 30 O O2B JSJ . . . H 3 15.212 15.128 21.431 1 157.72 ? O2B JSJ 601 B 1 HETATM 31 O O3' JSJ . . . H 3 10.996 8.972 25.959 1 102.31 ? O3' JSJ 601 B 1 HETATM 32 O O3A JSJ . . . H 3 14.853 14.34 23.688 1 134.1 ? O3A JSJ 601 B 1 HETATM 33 O O4' JSJ . . . H 3 12.98 11.634 27.054 1 84.14 ? O4' JSJ 601 B 1 HETATM 34 O O5' JSJ . . . H 3 13.549 12.341 24.466 1 100.48 ? O5' JSJ 601 B 1 HETATM 35 O O6 JSJ . . . H 3 10.139 7.645 17.813 1 162.81 ? O6 JSJ 601 B 1 HETATM 36 P PA JSJ . . . H 3 13.808 13.878 24.802 1 106.04 ? PA JSJ 601 B 1 HETATM 37 P PB JSJ . . . H 3 14.708 13.902 22.152 1 158.14 ? PB JSJ 601 B 1 HETATM 38 S S1 JSJ . . . H 3 12.898 13.486 21.876 1 165.44 ? S1 JSJ 601 B 1 HETATM 39 S S2 JSJ . . . H 3 12.954 11.519 21.272 1 174.18 ? S2 JSJ 601 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #