data_6MI6 # _model_server_result.job_id GHJ-t2ccOPGJ5Q7I_UyjRA _model_server_result.datetime_utc '2024-11-16 06:47:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 6MI6 # _exptl.entry_id 6MI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 6MI6 _cell.length_a 83.703 _cell.length_b 75.145 _cell.length_c 86.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H 2 1 C,I,J,K 3 1 D,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 85 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MI6 _atom_sites.fract_transf_matrix[1][1] 0.011947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 601 1 SO4 SO4 . F 3 JSJ A 1 602 285 JSJ UNL . G 2 SO4 A 1 603 1 SO4 SO4 . H 3 JSJ B 1 601 285 JSJ UNL . I 2 SO4 C 1 601 1 SO4 SO4 . J 4 ADP C 1 602 285 ADP ADP . K 2 SO4 C 1 603 1 SO4 SO4 . L 4 ADP D 1 601 285 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . L 4 62.594 33.11 11.787 1 121.2 ? PB ADP 601 D 1 HETATM 2 O O1B ADP . . . L 4 62.468 34.277 10.84 1 118.19 ? O1B ADP 601 D 1 HETATM 3 O O2B ADP . . . L 4 63.356 31.916 11.291 1 126.97 ? O2B ADP 601 D 1 HETATM 4 O O3B ADP . . . L 4 62.997 33.509 13.188 1 119.37 ? O3B ADP 601 D 1 HETATM 5 P PA ADP . . . L 4 60.891 31.842 13.298 1 121.27 ? PA ADP 601 D 1 HETATM 6 O O1A ADP . . . L 4 62.051 30.927 13.587 1 120.9 ? O1A ADP 601 D 1 HETATM 7 O O2A ADP . . . L 4 60.649 33.08 14.108 1 113.9 ? O2A ADP 601 D 1 HETATM 8 O O3A ADP . . . L 4 61.15 32.435 11.854 1 118.86 ? O3A ADP 601 D 1 HETATM 9 O O5' ADP . . . L 4 59.594 30.902 13.231 1 124.98 ? O5' ADP 601 D 1 HETATM 10 C C5' ADP . . . L 4 59.622 29.688 13.991 1 125.82 ? C5' ADP 601 D 1 HETATM 11 C C4' ADP . . . L 4 58.655 28.684 13.404 1 122.68 ? C4' ADP 601 D 1 HETATM 12 O O4' ADP . . . L 4 57.338 29.232 13.388 1 121.64 ? O4' ADP 601 D 1 HETATM 13 C C3' ADP . . . L 4 59.17 28.537 11.996 1 121.28 ? C3' ADP 601 D 1 HETATM 14 O O3' ADP . . . L 4 59.571 27.185 11.73 1 116.04 ? O3' ADP 601 D 1 HETATM 15 C C2' ADP . . . L 4 58.047 29.025 11.117 1 126.02 ? C2' ADP 601 D 1 HETATM 16 O O2' ADP . . . L 4 57.741 27.977 10.201 1 129.95 ? O2' ADP 601 D 1 HETATM 17 C C1' ADP . . . L 4 56.865 29.313 12.038 1 122.86 ? C1' ADP 601 D 1 HETATM 18 N N9 ADP . . . L 4 56.192 30.622 11.735 1 116.69 ? N9 ADP 601 D 1 HETATM 19 C C8 ADP . . . L 4 55.683 31.44 12.672 1 108.46 ? C8 ADP 601 D 1 HETATM 20 N N7 ADP . . . L 4 55.11 32.531 12.095 1 104.33 ? N7 ADP 601 D 1 HETATM 21 C C5 ADP . . . L 4 55.233 32.44 10.745 1 104.98 ? C5 ADP 601 D 1 HETATM 22 C C6 ADP . . . L 4 54.856 33.225 9.515 1 99.37 ? C6 ADP 601 D 1 HETATM 23 N N6 ADP . . . L 4 54.204 34.404 9.553 1 102.8 ? N6 ADP 601 D 1 HETATM 24 N N1 ADP . . . L 4 55.175 32.762 8.29 1 102.24 ? N1 ADP 601 D 1 HETATM 25 C C2 ADP . . . L 4 55.832 31.607 8.142 1 108.39 ? C2 ADP 601 D 1 HETATM 26 N N3 ADP . . . L 4 56.191 30.844 9.2 1 112.37 ? N3 ADP 601 D 1 HETATM 27 C C4 ADP . . . L 4 55.95 31.175 10.513 1 112.06 ? C4 ADP 601 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #