data_6MI6 # _model_server_result.job_id aGjdj_7fmEHWTKNyhqIqVw _model_server_result.datetime_utc '2024-11-16 06:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mi6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6MI6 # _exptl.entry_id 6MI6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 628.553 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.01 _cell.angle_gamma 90 _cell.entry_id 6MI6 _cell.length_a 83.703 _cell.length_b 75.145 _cell.length_c 86.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MI6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G 1 1 B,H 2 1 C,I,J,K 3 1 D,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 85 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 437 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1 _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.307 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H30 N6 O10 P2 S2' _chem_comp.formula_weight 628.553 _chem_comp.id JSJ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-[(S)-hydroxy{[(S)-hydroxy{[(1-hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl]disulfanyl}phosphoryl]oxy}phosphoryl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6MI6 _atom_sites.fract_transf_matrix[1][1] 0.011947 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000002 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01155 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 601 1 SO4 SO4 . F 3 JSJ A 1 602 285 JSJ UNL . G 2 SO4 A 1 603 1 SO4 SO4 . H 3 JSJ B 1 601 285 JSJ UNL . I 2 SO4 C 1 601 1 SO4 SO4 . J 4 ADP C 1 602 285 ADP ADP . K 2 SO4 C 1 603 1 SO4 SO4 . L 4 ADP D 1 601 285 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' JSJ . . . F 3 12.335 19.047 57.871 1 99.98 ? C1' JSJ 602 A 1 HETATM 2 C C10 JSJ . . . F 3 12.172 22.04 65.83 1 180.28 ? C10 JSJ 602 A 1 HETATM 3 C C11 JSJ . . . F 3 13.454 21.257 66.023 1 174.97 ? C11 JSJ 602 A 1 HETATM 4 C C12 JSJ . . . F 3 13.382 20.471 67.102 1 173.84 ? C12 JSJ 602 A 1 HETATM 5 C C13 JSJ . . . F 3 14.419 19.951 67.314 1 169.98 ? C13 JSJ 602 A 1 HETATM 6 C C14 JSJ . . . F 3 12.049 20.613 67.814 1 176.51 ? C14 JSJ 602 A 1 HETATM 7 C C15 JSJ . . . F 3 11.277 19.302 67.852 1 177.84 ? C15 JSJ 602 A 1 HETATM 8 C C16 JSJ . . . F 3 12.25 21.179 69.22 1 174.43 ? C16 JSJ 602 A 1 HETATM 9 C C17 JSJ . . . F 3 12.465 23.534 65.898 1 183.39 ? C17 JSJ 602 A 1 HETATM 10 C C18 JSJ . . . F 3 11.514 21.66 64.509 1 180.11 ? C18 JSJ 602 A 1 HETATM 11 C C2 JSJ . . . F 3 8.124 18.289 56.699 1 87.8 ? C2 JSJ 602 A 1 HETATM 12 C C2' JSJ . . . F 3 11.536 19.763 58.937 1 102.51 ? C2' JSJ 602 A 1 HETATM 13 C C3' JSJ . . . F 3 12.561 20.151 59.964 1 101.72 ? C3' JSJ 602 A 1 HETATM 14 C C4 JSJ . . . F 3 10.317 17.745 57.292 1 89.21 ? C4 JSJ 602 A 1 HETATM 15 C C4' JSJ . . . F 3 13.721 19.189 59.754 1 100.98 ? C4' JSJ 602 A 1 HETATM 16 C C5 JSJ . . . F 3 9.995 16.331 57.173 1 88.72 ? C5 JSJ 602 A 1 HETATM 17 C C5' JSJ . . . F 3 13.689 17.994 60.705 1 109.13 ? C5' JSJ 602 A 1 HETATM 18 C C6 JSJ . . . F 3 8.601 16.007 56.788 1 87.04 ? C6 JSJ 602 A 1 HETATM 19 C C8 JSJ . . . F 3 12.09 16.572 57.748 1 91.19 ? C8 JSJ 602 A 1 HETATM 20 N N1 JSJ . . . F 3 7.747 17.018 56.571 1 89.84 ? N1 JSJ 602 A 1 HETATM 21 N N10 JSJ . . . F 3 11.338 21.587 66.961 1 179.29 ? N10 JSJ 602 A 1 HETATM 22 N N3 JSJ . . . F 3 9.359 18.655 57.043 1 85.83 ? N3 JSJ 602 A 1 HETATM 23 N N6 JSJ . . . F 3 8.165 14.736 56.647 1 84.24 ? N6 JSJ 602 A 1 HETATM 24 N N7 JSJ . . . F 3 11.129 15.664 57.466 1 91.45 ? N7 JSJ 602 A 1 HETATM 25 N N9 JSJ . . . F 3 11.597 17.805 57.629 1 95.38 ? N9 JSJ 602 A 1 HETATM 26 O O1A JSJ . . . F 3 16.703 15.688 61.498 1 113.85 ? O1A JSJ 602 A 1 HETATM 27 O O1B JSJ . . . F 3 13.679 16.552 64.523 1 141 ? O1B JSJ 602 A 1 HETATM 28 O O2' JSJ . . . F 3 10.935 20.935 58.374 1 106.05 ? O2' JSJ 602 A 1 HETATM 29 O O2A JSJ . . . F 3 14.192 15.34 62.09 1 114.84 ? O2A JSJ 602 A 1 HETATM 30 O O2B JSJ . . . F 3 15.631 14.963 64.393 1 148.24 ? O2B JSJ 602 A 1 HETATM 31 O O3' JSJ . . . F 3 12.959 21.49 59.663 1 102.13 ? O3' JSJ 602 A 1 HETATM 32 O O3A JSJ . . . F 3 15.625 17.068 63.224 1 132.79 ? O3A JSJ 602 A 1 HETATM 33 O O4' JSJ . . . F 3 13.603 18.708 58.423 1 93.7 ? O4' JSJ 602 A 1 HETATM 34 O O5' JSJ . . . F 3 14.986 17.394 60.793 1 115.04 ? O5' JSJ 602 A 1 HETATM 35 O O6 JSJ . . . F 3 9.977 22.076 67.221 1 178.41 ? O6 JSJ 602 A 1 HETATM 36 P PA JSJ . . . F 3 15.367 16.254 61.871 1 116.61 ? PA JSJ 602 A 1 HETATM 37 P PB JSJ . . . F 3 15.173 16.377 64.594 1 145.67 ? PB JSJ 602 A 1 HETATM 38 S S1 JSJ . . . F 3 16.082 17.287 65.963 1 156.91 ? S1 JSJ 602 A 1 HETATM 39 S S2 JSJ . . . F 3 15.232 19.166 66.028 1 164.92 ? S2 JSJ 602 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #