data_6MI7
#
_model_server_result.job_id            kmhNbSf4yAJl7ff0-yMkOg 
_model_server_result.datetime_utc      '2025-03-09 01:51:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mi7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    6MI7 
#
_exptl.entry_id    6MI7 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MI7 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MI7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 235 n n 
C48 H481 PGT sing 236 n n 
C48 H482 PGT sing 237 n n 
C48 H483 PGT sing 238 n n 
C47 C46 PGT sing 239 n n 
C47 H471 PGT sing 240 n n 
C47 H472 PGT sing 241 n n 
C46 C45 PGT sing 242 n n 
C46 H461 PGT sing 243 n n 
C46 H462 PGT sing 244 n n 
C45 C44 PGT sing 245 n n 
C45 H451 PGT sing 246 n n 
C45 H452 PGT sing 247 n n 
C44 C43 PGT sing 248 n n 
C44 H441 PGT sing 249 n n 
C44 H442 PGT sing 250 n n 
C43 C42 PGT sing 251 n n 
C43 H431 PGT sing 252 n n 
C43 H432 PGT sing 253 n n 
C42 C41 PGT sing 254 n n 
C42 H421 PGT sing 255 n n 
C42 H422 PGT sing 256 n n 
C41 C40 PGT sing 257 n n 
C41 H411 PGT sing 258 n n 
C41 H412 PGT sing 259 n n 
C40 C39 PGT sing 260 n n 
C40 H401 PGT sing 261 n n 
C40 H402 PGT sing 262 n n 
C39 C38 PGT sing 263 n n 
C39 H391 PGT sing 264 n n 
C39 H392 PGT sing 265 n n 
C38 C37 PGT sing 266 n n 
C38 H381 PGT sing 267 n n 
C38 H382 PGT sing 268 n n 
C37 C36 PGT sing 269 n n 
C37 H371 PGT sing 270 n n 
C37 H372 PGT sing 271 n n 
C36 C35 PGT sing 272 n n 
C36 H361 PGT sing 273 n n 
C36 H362 PGT sing 274 n n 
C35 C34 PGT sing 275 n n 
C35 H351 PGT sing 276 n n 
C35 H352 PGT sing 277 n n 
C34 C33 PGT sing 278 n n 
C34 H341 PGT sing 279 n n 
C34 H342 PGT sing 280 n n 
C33 C32 PGT sing 281 n n 
C33 H331 PGT sing 282 n n 
C33 H332 PGT sing 283 n n 
C32 C31 PGT sing 284 n n 
C32 H321 PGT sing 285 n n 
C32 H322 PGT sing 286 n n 
C31 O31 PGT doub 287 n n 
C31 O2 PGT sing 288 n n 
O2 C2 PGT sing 289 n n 
C2 C1 PGT sing 290 n n 
C2 C3 PGT sing 291 n n 
C2 H2 PGT sing 292 n n 
C1 O3P PGT sing 293 n n 
C1 H11 PGT sing 294 n n 
C1 H12 PGT sing 295 n n 
O3P P PGT sing 296 n n 
P O1P PGT doub 297 n n 
P O2P PGT sing 298 n n 
P O4P PGT sing 299 n n 
O2P HO2P PGT sing 300 n n 
O4P C4 PGT sing 301 n n 
C4 C5 PGT sing 302 n n 
C4 H41 PGT sing 303 n n 
C4 H42 PGT sing 304 n n 
C5 O5 PGT sing 305 n n 
C5 C6 PGT sing 306 n n 
C5 H5 PGT sing 307 n n 
O5 HO5 PGT sing 308 n n 
C6 O6 PGT sing 309 n n 
C6 H61 PGT sing 310 n n 
C6 H62 PGT sing 311 n n 
O6 HO6 PGT sing 312 n n 
C3 O3 PGT sing 313 n n 
C3 H31 PGT sing 314 n n 
C3 H32 PGT sing 315 n n 
O3 C11 PGT sing 316 n n 
C11 O11 PGT doub 317 n n 
C11 C12 PGT sing 318 n n 
C12 C13 PGT sing 319 n n 
C12 H121 PGT sing 320 n n 
C12 H122 PGT sing 321 n n 
C13 C14 PGT sing 322 n n 
C13 H131 PGT sing 323 n n 
C13 H132 PGT sing 324 n n 
C14 C15 PGT sing 325 n n 
C14 H141 PGT sing 326 n n 
C14 H142 PGT sing 327 n n 
C15 C16 PGT sing 328 n n 
C15 H151 PGT sing 329 n n 
C15 H152 PGT sing 330 n n 
C16 C17 PGT sing 331 n n 
C16 H161 PGT sing 332 n n 
C16 H162 PGT sing 333 n n 
C17 C18 PGT sing 334 n n 
C17 H171 PGT sing 335 n n 
C17 H172 PGT sing 336 n n 
C18 C19 PGT sing 337 n n 
C18 H181 PGT sing 338 n n 
C18 H182 PGT sing 339 n n 
C19 C20 PGT sing 340 n n 
C19 H191 PGT sing 341 n n 
C19 H192 PGT sing 342 n n 
C20 C21 PGT sing 343 n n 
C20 H201 PGT sing 344 n n 
C20 H202 PGT sing 345 n n 
C21 C22 PGT sing 346 n n 
C21 H211 PGT sing 347 n n 
C21 H212 PGT sing 348 n n 
C22 C23 PGT sing 349 n n 
C22 H221 PGT sing 350 n n 
C22 H222 PGT sing 351 n n 
C23 C24 PGT sing 352 n n 
C23 H231 PGT sing 353 n n 
C23 H232 PGT sing 354 n n 
C24 C25 PGT sing 355 n n 
C24 H241 PGT sing 356 n n 
C24 H242 PGT sing 357 n n 
C25 C26 PGT sing 358 n n 
C25 H251 PGT sing 359 n n 
C25 H252 PGT sing 360 n n 
C26 H261 PGT sing 361 n n 
C26 H262 PGT sing 362 n n 
C26 H263 PGT sing 363 n n 
#
_atom_sites.entry_id                     6MI7 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        5 
_pdbx_nonpoly_scheme.mon_id           PGT 
_pdbx_nonpoly_scheme.pdb_strand_id    F 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       PGT 
_pdbx_nonpoly_scheme.auth_mon_id      PGT 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . F 5 102.608 114.19 113.747 1 20 ? C48 PGT 401 F 1 
HETATM 2 C C47 PGT . . . F 5 103.456 113.834 112.547 1 20 ? C47 PGT 401 F 1 
HETATM 3 C C46 PGT . . . F 5 103.307 112.365 112.175 1 20 ? C46 PGT 401 F 1 
HETATM 4 C C45 PGT . . . F 5 103.201 112.193 110.666 1 20 ? C45 PGT 401 F 1 
HETATM 5 C C44 PGT . . . F 5 102.869 113.519 109.994 1 20 ? C44 PGT 401 F 1 
HETATM 6 C C43 PGT . . . F 5 102.376 113.32 108.566 1 20 ? C43 PGT 401 F 1 
HETATM 7 C C42 PGT . . . F 5 102.099 114.659 107.892 1 20 ? C42 PGT 401 F 1 
HETATM 8 C C41 PGT . . . F 5 101.771 114.482 106.417 1 20 ? C41 PGT 401 F 1 
HETATM 9 C C40 PGT . . . F 5 102.075 113.066 105.956 1 20 ? C40 PGT 401 F 1 
HETATM 10 C C39 PGT . . . F 5 103.219 113.083 104.957 1 20 ? C39 PGT 401 F 1 
HETATM 11 C C38 PGT . . . F 5 103.004 114.184 103.93 1 20 ? C38 PGT 401 F 1 
HETATM 12 C C37 PGT . . . F 5 104.317 114.574 103.272 1 20 ? C37 PGT 401 F 1 
HETATM 13 C C36 PGT . . . F 5 104.834 113.449 102.394 1 20 ? C36 PGT 401 F 1 
HETATM 14 C C35 PGT . . . F 5 105.261 114.018 101.057 1 20 ? C35 PGT 401 F 1 
HETATM 15 C C34 PGT . . . F 5 104.404 115.224 100.715 1 20 ? C34 PGT 401 F 1 
HETATM 16 C C33 PGT . . . F 5 104.171 115.31 99.214 1 20 ? C33 PGT 401 F 1 
HETATM 17 C C32 PGT . . . F 5 105.049 114.333 98.446 1 20 ? C32 PGT 401 F 1 
HETATM 18 C C31 PGT . . . F 5 104.359 113.952 97.161 1 20 ? C31 PGT 401 F 1 
HETATM 19 O O31 PGT . . . F 5 104.018 112.805 96.945 1 20 ? O31 PGT 401 F 1 
HETATM 20 O O2 PGT . . . F 5 104.085 114.958 96.153 1 20 ? O2 PGT 401 F 1 
HETATM 21 C C2 PGT . . . F 5 102.933 115.757 96.432 1 20 ? C2 PGT 401 F 1 
HETATM 22 C C1 PGT . . . F 5 103.363 117.087 97.037 1 20 ? C1 PGT 401 F 1 
HETATM 23 O O3P PGT . . . F 5 103.939 117.899 96.02 1 20 ? O3P PGT 401 F 1 
HETATM 24 P P PGT . . . F 5 103.089 118.259 94.71 1 20 ? P PGT 401 F 1 
HETATM 25 O O1P PGT . . . F 5 101.759 117.562 94.801 1 20 ? O1P PGT 401 F 1 
HETATM 26 O O2P PGT . . . F 5 103.141 119.754 94.53 1 20 ? O2P PGT 401 F 1 
HETATM 27 O O4P PGT . . . F 5 103.934 117.58 93.525 1 20 ? O4P PGT 401 F 1 
HETATM 28 C C4 PGT . . . F 5 103.943 116.17 93.335 1 20 ? C4 PGT 401 F 1 
HETATM 29 C C5 PGT . . . F 5 102.63 115.753 92.694 1 20 ? C5 PGT 401 F 1 
HETATM 30 O O5 PGT . . . F 5 101.605 115.846 93.685 1 20 ? O5 PGT 401 F 1 
HETATM 31 C C6 PGT . . . F 5 102.737 114.319 92.186 1 20 ? C6 PGT 401 F 1 
HETATM 32 O O6 PGT . . . F 5 101.441 113.709 92.146 1 20 ? O6 PGT 401 F 1 
HETATM 33 C C3 PGT . . . F 5 101.981 115.061 97.398 1 20 ? C3 PGT 401 F 1 
HETATM 34 O O3 PGT . . . F 5 100.991 115.997 97.817 1 20 ? O3 PGT 401 F 1 
HETATM 35 C C11 PGT . . . F 5 101.037 116.557 99.156 1 20 ? C11 PGT 401 F 1 
HETATM 36 O O11 PGT . . . F 5 102.09 116.996 99.576 1 20 ? O11 PGT 401 F 1 
HETATM 37 C C12 PGT . . . F 5 99.797 116.595 100.012 1 20 ? C12 PGT 401 F 1 
HETATM 38 C C13 PGT . . . F 5 99.777 115.368 100.912 1 20 ? C13 PGT 401 F 1 
HETATM 39 C C14 PGT . . . F 5 98.968 115.634 102.174 1 20 ? C14 PGT 401 F 1 
HETATM 40 C C15 PGT . . . F 5 98.114 116.884 102.023 1 20 ? C15 PGT 401 F 1 
HETATM 41 C C16 PGT . . . F 5 97.947 117.592 103.359 1 20 ? C16 PGT 401 F 1 
HETATM 42 C C17 PGT . . . F 5 98.219 116.642 104.515 1 20 ? C17 PGT 401 F 1 
HETATM 43 C C18 PGT . . . F 5 97.003 115.771 104.8 1 20 ? C18 PGT 401 F 1 
HETATM 44 C C19 PGT . . . F 5 97.23 114.923 106.044 1 20 ? C19 PGT 401 F 1 
HETATM 45 C C20 PGT . . . F 5 95.91 114.533 106.697 1 20 ? C20 PGT 401 F 1 
HETATM 46 C C21 PGT . . . F 5 96.016 114.598 108.214 1 20 ? C21 PGT 401 F 1 
HETATM 47 C C22 PGT . . . F 5 97.226 115.421 108.636 1 20 ? C22 PGT 401 F 1 
HETATM 48 C C23 PGT . . . F 5 97.241 115.638 110.143 1 20 ? C23 PGT 401 F 1 
HETATM 49 C C24 PGT . . . F 5 98.481 116.411 110.573 1 20 ? C24 PGT 401 F 1 
HETATM 50 C C25 PGT . . . F 5 99.173 117.044 109.374 1 20 ? C25 PGT 401 F 1 
HETATM 51 C C26 PGT . . . F 5 100.658 116.767 109.395 1 20 ? C26 PGT 401 F 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           51 
#