data_6MI8 # _model_server_result.job_id VO4r2LamvFuy9GCf3vbODg _model_server_result.datetime_utc '2025-03-06 08:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6MI8 # _exptl.entry_id 6MI8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 544.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADP ORTHOVANADATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MI8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 149 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 139 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id F _struct_conn.ptnr2_label_atom_id VG _struct_conn.ptnr2_label_comp_id AOV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id AOV _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.763 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N5 O14 P2 V' _chem_comp.formula_weight 544.156 _chem_comp.id AOV _chem_comp.mon_nstd_flag . _chem_comp.name 'ADP ORTHOVANADATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B AOV doub 13 n n PB O2B AOV sing 14 n n PB O3B AOV sing 15 n n PB O3A AOV sing 16 n n O3B VG AOV sing 17 n n PA O1A AOV doub 18 n n PA O2A AOV sing 19 n n PA O3A AOV sing 20 n n PA O5' AOV sing 21 n n O5' C5' AOV sing 22 n n C5' C4' AOV sing 23 n n C4' O4' AOV sing 24 n n C4' C3' AOV sing 25 n n O4' C1' AOV sing 26 n n C3' O3' AOV sing 27 n n C3' C2' AOV sing 28 n n C2' O2' AOV sing 29 n n C2' C1' AOV sing 30 n n C1' N9 AOV sing 31 n n N9 C8 AOV sing 32 n y N9 C4 AOV sing 33 n y C8 N7 AOV doub 34 n y N7 C5 AOV sing 35 n y C5 C6 AOV sing 36 n y C5 C4 AOV doub 37 n y C6 N6 AOV sing 38 n n C6 N1 AOV doub 39 n y N1 C2 AOV sing 40 n y C2 N3 AOV doub 41 n y N3 C4 AOV sing 42 n y VG O1G AOV doub 43 n n VG O2G AOV sing 44 n n VG O3G AOV sing 45 n n VG O4G AOV sing 46 n n O2B H2B AOV sing 47 n n O2A H2A AOV sing 48 n n C5' "H5'1" AOV sing 49 n n C5' "H5'2" AOV sing 50 n n C4' H4' AOV sing 51 n n C3' H3' AOV sing 52 n n C1' H1' AOV sing 53 n n O3' HA AOV sing 54 n n C2' H2' AOV sing 55 n n O2' HB AOV sing 56 n n C8 H8 AOV sing 57 n n N6 H61N AOV sing 58 n n N6 H62N AOV sing 59 n n C2 H2 AOV sing 60 n n O2G H2G1 AOV sing 61 n n O3G H3G1 AOV sing 62 n n O4G H4G1 AOV sing 63 n n # _atom_sites.entry_id 6MI8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 AOV A 1 301 2 AOV AOV . F 4 AOV B 1 301 1 AOV AOV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB AOV . . . E 4 89.556 103.326 55.399 1 65.34 ? PB AOV 301 A 1 HETATM 2 O O1B AOV . . . E 4 89.754 102.235 54.38 1 65.34 ? O1B AOV 301 A 1 HETATM 3 O O2B AOV . . . E 4 90.102 102.919 56.741 1 65.34 ? O2B AOV 301 A 1 HETATM 4 O O3B AOV . . . E 4 90.258 104.742 54.922 1 65.34 ? O3B AOV 301 A 1 HETATM 5 P PA AOV . . . E 4 87.351 104.209 56.999 1 65.34 ? PA AOV 301 A 1 HETATM 6 O O1A AOV . . . E 4 85.905 104.563 56.848 1 65.34 ? O1A AOV 301 A 1 HETATM 7 O O2A AOV . . . E 4 87.524 103.214 58.11 1 65.34 ? O2A AOV 301 A 1 HETATM 8 O O3A AOV . . . E 4 87.944 103.586 55.596 1 65.34 ? O3A AOV 301 A 1 HETATM 9 O O5' AOV . . . E 4 88.112 105.61 57.402 1 65.34 ? O5' AOV 301 A 1 HETATM 10 C C5' AOV . . . E 4 87.664 106.235 58.584 1 65.34 ? C5' AOV 301 A 1 HETATM 11 C C4' AOV . . . E 4 86.796 107.411 58.223 1 65.34 ? C4' AOV 301 A 1 HETATM 12 O O4' AOV . . . E 4 85.808 107.44 59.033 1 65.34 ? O4' AOV 301 A 1 HETATM 13 C C3' AOV . . . E 4 87.642 108.838 58.395 1 65.34 ? C3' AOV 301 A 1 HETATM 14 O O3' AOV . . . E 4 87.153 109.815 57.437 1 65.34 ? O3' AOV 301 A 1 HETATM 15 C C2' AOV . . . E 4 87.401 109.245 59.565 1 65.34 ? C2' AOV 301 A 1 HETATM 16 O O2' AOV . . . E 4 87.381 110.743 59.563 1 65.34 ? O2' AOV 301 A 1 HETATM 17 C C1' AOV . . . E 4 85.958 108.729 59.884 1 65.34 ? C1' AOV 301 A 1 HETATM 18 N N9 AOV . . . E 4 85.791 108.542 61.186 1 65.34 ? N9 AOV 301 A 1 HETATM 19 C C8 AOV . . . E 4 86.202 109.387 62.116 1 65.34 ? C8 AOV 301 A 1 HETATM 20 N N7 AOV . . . E 4 85.879 108.946 63.32 1 65.34 ? N7 AOV 301 A 1 HETATM 21 C C5 AOV . . . E 4 85.231 107.784 63.182 1 65.34 ? C5 AOV 301 A 1 HETATM 22 C C6 AOV . . . E 4 84.651 106.859 64.06 1 65.34 ? C6 AOV 301 A 1 HETATM 23 N N6 AOV . . . E 4 84.698 107.1 65.497 1 65.34 ? N6 AOV 301 A 1 HETATM 24 N N1 AOV . . . E 4 84.062 105.77 63.594 1 65.34 ? N1 AOV 301 A 1 HETATM 25 C C2 AOV . . . E 4 84.018 105.544 62.29 1 65.34 ? C2 AOV 301 A 1 HETATM 26 N N3 AOV . . . E 4 84.555 106.401 61.44 1 65.34 ? N3 AOV 301 A 1 HETATM 27 C C4 AOV . . . E 4 85.171 107.528 61.831 1 65.34 ? C4 AOV 301 A 1 HETATM 28 V VG AOV . . . E 4 92.047 104.483 53.838 1 65.34 ? VG AOV 301 A 1 HETATM 29 O O1G AOV . . . E 4 92.416 102.856 55.114 1 65.34 ? O1G AOV 301 A 1 HETATM 30 O O2G AOV . . . E 4 94.091 104.794 54.218 1 65.34 ? O2G AOV 301 A 1 HETATM 31 O O3G AOV . . . E 4 92.073 106.57 54.072 1 65.34 ? O3G AOV 301 A 1 HETATM 32 O O4G AOV . . . E 4 91.71 103.907 51.849 1 65.34 ? O4G AOV 301 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #