data_6MIC # _model_server_result.job_id pDA15h5rMzQtWVaFkCkJTA _model_server_result.datetime_utc '2025-02-28 13:12:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6MIC # _exptl.entry_id 6MIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MIC _cell.length_a 63.29 _cell.length_b 63.29 _cell.length_c 236.291 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.645 -54.810748 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 63.29 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 321 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 183 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 421 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.049 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 250 n n C1 H11 MPD sing 251 n n C1 H12 MPD sing 252 n n C1 H13 MPD sing 253 n n C2 O2 MPD sing 254 n n C2 CM MPD sing 255 n n C2 C3 MPD sing 256 n n O2 HO2 MPD sing 257 n n CM HM1 MPD sing 258 n n CM HM2 MPD sing 259 n n CM HM3 MPD sing 260 n n C3 C4 MPD sing 261 n n C3 H31 MPD sing 262 n n C3 H32 MPD sing 263 n n C4 O4 MPD sing 264 n n C4 C5 MPD sing 265 n n C4 H4 MPD sing 266 n n O4 HO4 MPD sing 267 n n C5 H51 MPD sing 268 n n C5 H52 MPD sing 269 n n C5 H53 MPD sing 270 n n # _atom_sites.entry_id 6MIC _atom_sites.fract_transf_matrix[1][1] 0.0158 _atom_sites.fract_transf_matrix[1][2] 0.009122 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 501 501 MPD MPD . C 3 GOL A 1 502 502 GOL GOL . D 3 GOL A 1 503 503 GOL GOL . E 4 HOH A 1 601 140 HOH HOH . E 4 HOH A 2 602 139 HOH HOH . E 4 HOH A 3 603 16 HOH HOH . E 4 HOH A 4 604 106 HOH HOH . E 4 HOH A 5 605 9 HOH HOH . E 4 HOH A 6 606 96 HOH HOH . E 4 HOH A 7 607 136 HOH HOH . E 4 HOH A 8 608 67 HOH HOH . E 4 HOH A 9 609 28 HOH HOH . E 4 HOH A 10 610 15 HOH HOH . E 4 HOH A 11 611 124 HOH HOH . E 4 HOH A 12 612 57 HOH HOH . E 4 HOH A 13 613 4 HOH HOH . E 4 HOH A 14 614 6 HOH HOH . E 4 HOH A 15 615 32 HOH HOH . E 4 HOH A 16 616 3 HOH HOH . E 4 HOH A 17 617 89 HOH HOH . E 4 HOH A 18 618 92 HOH HOH . E 4 HOH A 19 619 54 HOH HOH . E 4 HOH A 20 620 69 HOH HOH . E 4 HOH A 21 621 20 HOH HOH . E 4 HOH A 22 622 41 HOH HOH . E 4 HOH A 23 623 88 HOH HOH . E 4 HOH A 24 624 17 HOH HOH . E 4 HOH A 25 625 66 HOH HOH . E 4 HOH A 26 626 22 HOH HOH . E 4 HOH A 27 627 30 HOH HOH . E 4 HOH A 28 628 21 HOH HOH . E 4 HOH A 29 629 11 HOH HOH . E 4 HOH A 30 630 2 HOH HOH . E 4 HOH A 31 631 18 HOH HOH . E 4 HOH A 32 632 118 HOH HOH . E 4 HOH A 33 633 82 HOH HOH . E 4 HOH A 34 634 27 HOH HOH . E 4 HOH A 35 635 33 HOH HOH . E 4 HOH A 36 636 111 HOH HOH . E 4 HOH A 37 637 10 HOH HOH . E 4 HOH A 38 638 1 HOH HOH . E 4 HOH A 39 639 104 HOH HOH . E 4 HOH A 40 640 75 HOH HOH . E 4 HOH A 41 641 107 HOH HOH . E 4 HOH A 42 642 39 HOH HOH . E 4 HOH A 43 643 13 HOH HOH . E 4 HOH A 44 644 113 HOH HOH . E 4 HOH A 45 645 24 HOH HOH . E 4 HOH A 46 646 90 HOH HOH . E 4 HOH A 47 647 56 HOH HOH . E 4 HOH A 48 648 53 HOH HOH . E 4 HOH A 49 649 23 HOH HOH . E 4 HOH A 50 650 105 HOH HOH . E 4 HOH A 51 651 91 HOH HOH . E 4 HOH A 52 652 50 HOH HOH . E 4 HOH A 53 653 48 HOH HOH . E 4 HOH A 54 654 25 HOH HOH . E 4 HOH A 55 655 64 HOH HOH . E 4 HOH A 56 656 14 HOH HOH . E 4 HOH A 57 657 8 HOH HOH . E 4 HOH A 58 658 108 HOH HOH . E 4 HOH A 59 659 5 HOH HOH . E 4 HOH A 60 660 46 HOH HOH . E 4 HOH A 61 661 12 HOH HOH . E 4 HOH A 62 662 37 HOH HOH . E 4 HOH A 63 663 101 HOH HOH . E 4 HOH A 64 664 122 HOH HOH . E 4 HOH A 65 665 55 HOH HOH . E 4 HOH A 66 666 93 HOH HOH . E 4 HOH A 67 667 36 HOH HOH . E 4 HOH A 68 668 62 HOH HOH . E 4 HOH A 69 669 42 HOH HOH . E 4 HOH A 70 670 78 HOH HOH . E 4 HOH A 71 671 61 HOH HOH . E 4 HOH A 72 672 97 HOH HOH . E 4 HOH A 73 673 43 HOH HOH . E 4 HOH A 74 674 120 HOH HOH . E 4 HOH A 75 675 45 HOH HOH . E 4 HOH A 76 676 115 HOH HOH . E 4 HOH A 77 677 123 HOH HOH . E 4 HOH A 78 678 58 HOH HOH . E 4 HOH A 79 679 110 HOH HOH . E 4 HOH A 80 680 117 HOH HOH . E 4 HOH A 81 681 35 HOH HOH . E 4 HOH A 82 682 51 HOH HOH . E 4 HOH A 83 683 72 HOH HOH . E 4 HOH A 84 684 84 HOH HOH . E 4 HOH A 85 685 38 HOH HOH . E 4 HOH A 86 686 119 HOH HOH . E 4 HOH A 87 687 126 HOH HOH . E 4 HOH A 88 688 34 HOH HOH . E 4 HOH A 89 689 31 HOH HOH . E 4 HOH A 90 690 95 HOH HOH . E 4 HOH A 91 691 47 HOH HOH . E 4 HOH A 92 692 102 HOH HOH . E 4 HOH A 93 693 103 HOH HOH . E 4 HOH A 94 694 70 HOH HOH . E 4 HOH A 95 695 127 HOH HOH . E 4 HOH A 96 696 59 HOH HOH . E 4 HOH A 97 697 26 HOH HOH . E 4 HOH A 98 698 71 HOH HOH . E 4 HOH A 99 699 63 HOH HOH . E 4 HOH A 100 700 94 HOH HOH . E 4 HOH A 101 701 128 HOH HOH . E 4 HOH A 102 702 125 HOH HOH . E 4 HOH A 103 703 19 HOH HOH . E 4 HOH A 104 704 7 HOH HOH . E 4 HOH A 105 705 40 HOH HOH . E 4 HOH A 106 706 44 HOH HOH . E 4 HOH A 107 707 138 HOH HOH . E 4 HOH A 108 708 60 HOH HOH . E 4 HOH A 109 709 109 HOH HOH . E 4 HOH A 110 710 137 HOH HOH . E 4 HOH A 111 711 112 HOH HOH . E 4 HOH A 112 712 132 HOH HOH . E 4 HOH A 113 713 141 HOH HOH . E 4 HOH A 114 714 74 HOH HOH . E 4 HOH A 115 715 134 HOH HOH . E 4 HOH A 116 716 116 HOH HOH . E 4 HOH A 117 717 68 HOH HOH . E 4 HOH A 118 718 99 HOH HOH . E 4 HOH A 119 719 79 HOH HOH . E 4 HOH A 120 720 87 HOH HOH . E 4 HOH A 121 721 133 HOH HOH . E 4 HOH A 122 722 100 HOH HOH . E 4 HOH A 123 723 49 HOH HOH . E 4 HOH A 124 724 114 HOH HOH . E 4 HOH A 125 725 86 HOH HOH . E 4 HOH A 126 726 52 HOH HOH . E 4 HOH A 127 727 131 HOH HOH . E 4 HOH A 128 728 98 HOH HOH . E 4 HOH A 129 729 73 HOH HOH . E 4 HOH A 130 730 129 HOH HOH . E 4 HOH A 131 731 85 HOH HOH . E 4 HOH A 132 732 81 HOH HOH . E 4 HOH A 133 733 76 HOH HOH . E 4 HOH A 134 734 29 HOH HOH . E 4 HOH A 135 735 80 HOH HOH . E 4 HOH A 136 736 83 HOH HOH . E 4 HOH A 137 737 65 HOH HOH . E 4 HOH A 138 738 77 HOH HOH . E 4 HOH A 139 739 121 HOH HOH . E 4 HOH A 140 740 135 HOH HOH . E 4 HOH A 141 741 130 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . B 2 21.992 -18.353 22.917 1 21.85 ? C1 MPD 501 A 1 HETATM 2 C C2 MPD . . . B 2 20.51 -18.283 23.234 1 24.26 ? C2 MPD 501 A 1 HETATM 3 O O2 MPD . . . B 2 19.967 -17.186 22.456 1 38.54 ? O2 MPD 501 A 1 HETATM 4 C CM MPD . . . B 2 19.731 -19.565 22.894 1 29.02 ? CM MPD 501 A 1 HETATM 5 C C3 MPD . . . B 2 20.341 -17.915 24.702 1 17.76 ? C3 MPD 501 A 1 HETATM 6 C C4 MPD . . . B 2 20.894 -18.977 25.653 1 22.21 ? C4 MPD 501 A 1 HETATM 7 O O4 MPD . . . B 2 22.287 -19.136 25.484 1 20.76 ? O4 MPD 501 A 1 HETATM 8 C C5 MPD . . . B 2 20.567 -18.584 27.091 1 26.97 ? C5 MPD 501 A 1 HETATM 9 H H11 MPD . . . B 2 22.566 -18.123 23.815 1 26.22 ? H11 MPD 501 A 1 HETATM 10 H H12 MPD . . . B 2 22.243 -19.355 22.572 1 26.22 ? H12 MPD 501 A 1 HETATM 11 H H13 MPD . . . B 2 22.231 -17.629 22.138 1 26.22 ? H13 MPD 501 A 1 HETATM 12 H HO2 MPD . . . B 2 19.632 -16.491 23.061 1 46.25 ? HO2 MPD 501 A 1 HETATM 13 H HM1 MPD . . . B 2 19.226 -19.931 23.787 1 34.82 ? HM1 MPD 501 A 1 HETATM 14 H HM2 MPD . . . B 2 18.993 -19.348 22.122 1 34.82 ? HM2 MPD 501 A 1 HETATM 15 H HM3 MPD . . . B 2 20.423 -20.325 22.531 1 34.82 ? HM3 MPD 501 A 1 HETATM 16 H H31 MPD . . . B 2 20.847 -16.969 24.892 1 21.31 ? H31 MPD 501 A 1 HETATM 17 H H32 MPD . . . B 2 19.281 -17.767 24.912 1 21.31 ? H32 MPD 501 A 1 HETATM 18 H H4 MPD . . . B 2 20.394 -19.921 25.436 1 26.65 ? H4 MPD 501 A 1 HETATM 19 H HO4 MPD . . . B 2 22.593 -19.907 26.007 1 24.91 ? HO4 MPD 501 A 1 HETATM 20 H H51 MPD . . . B 2 21.49 -18.516 27.668 1 32.36 ? H51 MPD 501 A 1 HETATM 21 H H52 MPD . . . B 2 20.062 -17.619 27.099 1 32.36 ? H52 MPD 501 A 1 HETATM 22 H H53 MPD . . . B 2 19.917 -19.338 27.535 1 32.36 ? H53 MPD 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #