data_6MIT
#
_model_server_result.job_id            zsaxO0Qtx9yw_uQZIFtV1Q 
_model_server_result.datetime_utc      '2024-12-21 14:04:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":302}' 
#
_entry.id    6MIT 
#
_exptl.entry_id    6MIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              612.624 
_entity.id                          7 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            NOVOBIOCIN 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MIT 
_cell.length_a            116.427 
_cell.length_b            156.984 
_cell.length_c            295.518 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA pentameric 5 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,X,Y 1 1 
F,G,H,I,J,S,T,U,V,W,Z,AA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             U 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H36 N2 O11' 
_chem_comp.formula_weight    612.624 
_chem_comp.id                NOV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NOVOBIOCIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-Hydroxy-3-[4-hydroxy-3-(3-methylbut-2-enyl)benzamido]-8-methylcoumarin-7-yl 3-O-carbamoyl-5,5-di-C-methyl-alpha-l-lyxofuranoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 NOV sing 237 n n 
C1 H11A NOV sing 238 n n 
C1 H12 NOV sing 239 n n 
C1 H13 NOV sing 240 n n 
O1 C27 NOV sing 241 n n 
N1 C12 NOV sing 242 n n 
N1 HN11 NOV sing 243 n n 
N1 HN12 NOV sing 244 n n 
C12 O4 NOV doub 245 n n 
C12 O5 NOV sing 246 n n 
O5 C28 NOV sing 247 n n 
C27 C28 NOV sing 248 n n 
C27 C31 NOV sing 249 n n 
C27 H27 NOV sing 250 n n 
C28 C29 NOV sing 251 n n 
C28 H28 NOV sing 252 n n 
C29 O6 NOV sing 253 n n 
C29 C30 NOV sing 254 n n 
C29 H29 NOV sing 255 n n 
O6 HO6 NOV sing 256 n n 
C30 O7 NOV sing 257 n n 
C30 O8 NOV sing 258 n n 
C30 H30 NOV sing 259 n n 
O7 C31 NOV sing 260 n n 
C31 C23 NOV sing 261 n n 
C31 C26 NOV sing 262 n n 
C23 H231 NOV sing 263 n n 
C23 H232 NOV sing 264 n n 
C23 H233 NOV sing 265 n n 
C26 H261 NOV sing 266 n n 
C26 H262 NOV sing 267 n n 
C26 H263 NOV sing 268 n n 
O8 C3 NOV sing 269 n n 
C3 C4 NOV doub 270 n y 
C3 C11 NOV sing 271 n y 
C4 C2 NOV sing 272 n n 
C4 C5 NOV sing 273 n y 
C2 H21A NOV sing 274 n n 
C2 H22 NOV sing 275 n n 
C2 H23 NOV sing 276 n n 
C5 C9 NOV doub 277 n y 
C5 O10 NOV sing 278 n n 
C9 C10 NOV sing 279 n y 
C9 C8 NOV sing 280 n n 
C10 C11 NOV doub 281 n y 
C10 H10 NOV sing 282 n n 
C11 H11 NOV sing 283 n n 
O10 C6 NOV sing 284 n n 
C6 O11 NOV doub 285 n n 
C6 C7 NOV sing 286 n n 
C7 C8 NOV doub 287 n n 
C7 N2 NOV sing 288 n n 
C8 O9 NOV sing 289 n n 
O9 HO9 NOV sing 290 n n 
N2 C13 NOV sing 291 n n 
N2 HN2 NOV sing 292 n n 
C13 O2 NOV doub 293 n n 
C13 C14 NOV sing 294 n n 
C14 C15 NOV doub 295 n y 
C14 C19 NOV sing 296 n y 
C15 C16 NOV sing 297 n y 
C15 H15 NOV sing 298 n n 
C16 C17 NOV doub 299 n y 
C16 C20 NOV sing 300 n n 
C17 O3 NOV sing 301 n n 
C17 C18 NOV sing 302 n y 
O3 HO3 NOV sing 303 n n 
C18 C19 NOV doub 304 n y 
C18 H18 NOV sing 305 n n 
C19 H19 NOV sing 306 n n 
C20 C21 NOV sing 307 n n 
C20 H201 NOV sing 308 n n 
C20 H202 NOV sing 309 n n 
C21 C22 NOV doub 310 n n 
C21 H21 NOV sing 311 n n 
C22 C24 NOV sing 312 n n 
C22 C25 NOV sing 313 n n 
C24 H241 NOV sing 314 n n 
C24 H242 NOV sing 315 n n 
C24 H243 NOV sing 316 n n 
C25 H251 NOV sing 317 n n 
C25 H252 NOV sing 318 n n 
C25 H253 NOV sing 319 n n 
#
_atom_sites.entry_id                     6MIT 
_atom_sites.fract_transf_matrix[1][1]    0.008589 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00637 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003384 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 5 SO4 A 1 301 5 SO4 SO4 . 
L 5 SO4 A 1 302 6 SO4 SO4 . 
M 6 CL A 1 303 13 CL CL . 
N 5 SO4 B 1 301 7 SO4 SO4 . 
O 5 SO4 F 1 401 11 SO4 SO4 . 
P 5 SO4 G 1 401 1 SO4 SO4 . 
Q 5 SO4 G 1 402 3 SO4 SO4 . 
R 5 SO4 G 1 403 4 SO4 SO4 . 
S 5 SO4 D 1 301 9 SO4 SO4 . 
T 5 SO4 E 1 301 10 SO4 SO4 . 
U 7 NOV E 1 302 12 NOV NOV . 
V 5 SO4 J 1 401 2 SO4 SO4 . 
W 5 SO4 J 1 402 8 SO4 SO4 . 
X 8 HOH A 1 401 1 HOH HOH . 
X 8 HOH A 2 402 2 HOH HOH . 
X 8 HOH A 3 403 8 HOH HOH . 
Y 8 HOH B 1 401 7 HOH HOH . 
Y 8 HOH B 2 402 4 HOH HOH . 
Z 8 HOH D 1 401 5 HOH HOH . 
Z 8 HOH D 2 402 6 HOH HOH . 
AA 8 HOH E 1 401 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NOV . . . U 7 -13.562 -38.344 84.028 1 153.77 ? C1 NOV 302 E 1 
HETATM 2 O O1 NOV . . . U 7 -13.104 -37.32 83.146 1 158.57 ? O1 NOV 302 E 1 
HETATM 3 N N1 NOV . . . U 7 -9.484 -35.851 85.144 1 167.12 ? N1 NOV 302 E 1 
HETATM 4 C C12 NOV . . . U 7 -10.861 -35.791 84.928 1 162.22 ? C12 NOV 302 E 1 
HETATM 5 O O4 NOV . . . U 7 -11.711 -36.213 85.722 1 159.29 ? O4 NOV 302 E 1 
HETATM 6 O O5 NOV . . . U 7 -11.226 -35.166 83.742 1 154.43 ? O5 NOV 302 E 1 
HETATM 7 C C27 NOV . . . U 7 -11.732 -37.378 82.716 1 151.56 ? C27 NOV 302 E 1 
HETATM 8 C C28 NOV . . . U 7 -11.208 -35.89 82.502 1 147.3 ? C28 NOV 302 E 1 
HETATM 9 C C29 NOV . . . U 7 -9.785 -35.868 81.829 1 147.16 ? C29 NOV 302 E 1 
HETATM 10 O O6 NOV . . . U 7 -8.867 -35.552 82.823 1 152.36 ? O6 NOV 302 E 1 
HETATM 11 C C30 NOV . . . U 7 -9.562 -37.283 81.242 1 158.44 ? C30 NOV 302 E 1 
HETATM 12 O O7 NOV . . . U 7 -10.701 -37.546 80.54 1 162.62 ? O7 NOV 302 E 1 
HETATM 13 C C31 NOV . . . U 7 -11.687 -38.105 81.325 1 165.51 ? C31 NOV 302 E 1 
HETATM 14 C C23 NOV . . . U 7 -13.018 -37.873 80.577 1 158.61 ? C23 NOV 302 E 1 
HETATM 15 C C26 NOV . . . U 7 -11.398 -39.615 81.495 1 169.04 ? C26 NOV 302 E 1 
HETATM 16 O O8 NOV . . . U 7 -8.546 -37.191 80.276 1 171.38 ? O8 NOV 302 E 1 
HETATM 17 C C3 NOV . . . U 7 -8.47 -38.122 79.262 1 164.72 ? C3 NOV 302 E 1 
HETATM 18 C C4 NOV . . . U 7 -7.476 -39.11 79.432 1 165.68 ? C4 NOV 302 E 1 
HETATM 19 C C2 NOV . . . U 7 -6.57 -39.234 80.631 1 155.75 ? C2 NOV 302 E 1 
HETATM 20 C C5 NOV . . . U 7 -7.352 -40.027 78.399 1 167.05 ? C5 NOV 302 E 1 
HETATM 21 C C9 NOV . . . U 7 -8.144 -39.973 77.254 1 162.53 ? C9 NOV 302 E 1 
HETATM 22 C C10 NOV . . . U 7 -9.111 -38.979 77.095 1 155.68 ? C10 NOV 302 E 1 
HETATM 23 C C11 NOV . . . U 7 -9.275 -38.052 78.083 1 155.35 ? C11 NOV 302 E 1 
HETATM 24 O O10 NOV . . . U 7 -6.402 -40.962 78.627 1 165.84 ? O10 NOV 302 E 1 
HETATM 25 C C6 NOV . . . U 7 -6.095 -41.865 77.63 1 154.39 ? C6 NOV 302 E 1 
HETATM 26 O O11 NOV . . . U 7 -5.111 -42.551 77.872 1 152.54 ? O11 NOV 302 E 1 
HETATM 27 C C7 NOV . . . U 7 -6.907 -41.829 76.417 1 146.75 ? C7 NOV 302 E 1 
HETATM 28 C C8 NOV . . . U 7 -7.939 -40.951 76.272 1 152.6 ? C8 NOV 302 E 1 
HETATM 29 O O9 NOV . . . U 7 -8.657 -40.764 75.149 1 152.86 ? O9 NOV 302 E 1 
HETATM 30 N N2 NOV . . . U 7 -6.402 -42.417 75.263 1 147.24 ? N2 NOV 302 E 1 
HETATM 31 C C13 NOV . . . U 7 -5.749 -41.625 74.301 1 141 ? C13 NOV 302 E 1 
HETATM 32 O O2 NOV . . . U 7 -5.594 -40.413 74.448 1 142.31 ? O2 NOV 302 E 1 
HETATM 33 C C14 NOV . . . U 7 -5.309 -42.367 73.113 1 128.22 ? C14 NOV 302 E 1 
HETATM 34 C C15 NOV . . . U 7 -4.666 -41.627 72.131 1 120.4 ? C15 NOV 302 E 1 
HETATM 35 C C16 NOV . . . U 7 -4.243 -42.257 70.97 1 120.34 ? C16 NOV 302 E 1 
HETATM 36 C C17 NOV . . . U 7 -4.487 -43.629 70.832 1 122.97 ? C17 NOV 302 E 1 
HETATM 37 O O3 NOV . . . U 7 -4.084 -44.261 69.723 1 133.05 ? O3 NOV 302 E 1 
HETATM 38 C C18 NOV . . . U 7 -5.137 -44.38 71.811 1 107.01 ? C18 NOV 302 E 1 
HETATM 39 C C19 NOV . . . U 7 -5.552 -43.733 72.951 1 119.49 ? C19 NOV 302 E 1 
HETATM 40 C C20 NOV . . . U 7 -3.519 -41.486 69.89 1 117.07 ? C20 NOV 302 E 1 
HETATM 41 C C21 NOV . . . U 7 -4.457 -40.55 69.205 1 129.74 ? C21 NOV 302 E 1 
HETATM 42 C C22 NOV . . . U 7 -4.156 -39.918 68.064 1 128.46 ? C22 NOV 302 E 1 
HETATM 43 C C24 NOV . . . U 7 -2.839 -40.096 67.374 1 102.59 ? C24 NOV 302 E 1 
HETATM 44 C C25 NOV . . . U 7 -5.166 -39.007 67.456 1 126.62 ? C25 NOV 302 E 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#