data_6MJ7 # _model_server_result.job_id NhAEdKcN4avyVtgvQ1S_IA _model_server_result.datetime_utc '2024-11-22 20:57:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mj7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6MJ7 # _exptl.entry_id 6MJ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 122.16 _cell.angle_gamma 90 _cell.entry_id 6MJ7 _cell.length_a 44.971 _cell.length_b 32.269 _cell.length_c 34.941 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 12 A CYS 128 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 15 A CYS 131 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 A SG CYS 26 A CYS 142 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc4 A SG CYS 29 A CYS 145 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc5 A SG CYS 35 A CYS 151 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc6 A SG CYS 38 A CYS 154 1_555 B ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc7 A NE2 HIS 44 A HIS 160 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc8 A ND1 HIS 47 A HIS 163 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 6MJ7 _atom_sites.fract_transf_matrix[1][1] 0.022237 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.013983 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 201 1 ZN ZN . C 2 ZN A 1 202 2 ZN ZN . D 3 DIO A 1 203 1 DIO DOX . E 4 ARG A 1 204 1 ARG ARG . F 5 HOH A 1 301 106 HOH HOH . F 5 HOH A 2 302 43 HOH HOH . F 5 HOH A 3 303 54 HOH HOH . F 5 HOH A 4 304 89 HOH HOH . F 5 HOH A 5 305 104 HOH HOH . F 5 HOH A 6 306 74 HOH HOH . F 5 HOH A 7 307 108 HOH HOH . F 5 HOH A 8 308 38 HOH HOH . F 5 HOH A 9 309 87 HOH HOH . F 5 HOH A 10 310 101 HOH HOH . F 5 HOH A 11 311 109 HOH HOH . F 5 HOH A 12 312 34 HOH HOH . F 5 HOH A 13 313 47 HOH HOH . F 5 HOH A 14 314 2 HOH HOH . F 5 HOH A 15 315 81 HOH HOH . F 5 HOH A 16 316 24 HOH HOH . F 5 HOH A 17 317 75 HOH HOH . F 5 HOH A 18 318 19 HOH HOH . F 5 HOH A 19 319 11 HOH HOH . F 5 HOH A 20 320 12 HOH HOH . F 5 HOH A 21 321 4 HOH HOH . F 5 HOH A 22 322 84 HOH HOH . F 5 HOH A 23 323 20 HOH HOH . F 5 HOH A 24 324 36 HOH HOH . F 5 HOH A 25 325 40 HOH HOH . F 5 HOH A 26 326 7 HOH HOH . F 5 HOH A 27 327 70 HOH HOH . F 5 HOH A 28 328 10 HOH HOH . F 5 HOH A 29 329 41 HOH HOH . F 5 HOH A 30 330 107 HOH HOH . F 5 HOH A 31 331 3 HOH HOH . F 5 HOH A 32 332 26 HOH HOH . F 5 HOH A 33 333 1 HOH HOH . F 5 HOH A 34 334 14 HOH HOH . F 5 HOH A 35 335 102 HOH HOH . F 5 HOH A 36 336 39 HOH HOH . F 5 HOH A 37 337 51 HOH HOH . F 5 HOH A 38 338 25 HOH HOH . F 5 HOH A 39 339 9 HOH HOH . F 5 HOH A 40 340 44 HOH HOH . F 5 HOH A 41 341 13 HOH HOH . F 5 HOH A 42 342 73 HOH HOH . F 5 HOH A 43 343 29 HOH HOH . F 5 HOH A 44 344 32 HOH HOH . F 5 HOH A 45 345 79 HOH HOH . F 5 HOH A 46 346 72 HOH HOH . F 5 HOH A 47 347 16 HOH HOH . F 5 HOH A 48 348 5 HOH HOH . F 5 HOH A 49 349 98 HOH HOH . F 5 HOH A 50 350 37 HOH HOH . F 5 HOH A 51 351 31 HOH HOH . F 5 HOH A 52 352 15 HOH HOH . F 5 HOH A 53 353 100 HOH HOH . F 5 HOH A 54 354 71 HOH HOH . F 5 HOH A 55 355 97 HOH HOH . F 5 HOH A 56 356 77 HOH HOH . F 5 HOH A 57 357 30 HOH HOH . F 5 HOH A 58 358 21 HOH HOH . F 5 HOH A 59 359 96 HOH HOH . F 5 HOH A 60 360 68 HOH HOH . F 5 HOH A 61 361 49 HOH HOH . F 5 HOH A 62 362 22 HOH HOH . F 5 HOH A 63 363 60 HOH HOH . F 5 HOH A 64 364 8 HOH HOH . F 5 HOH A 65 365 23 HOH HOH . F 5 HOH A 66 366 58 HOH HOH . F 5 HOH A 67 367 6 HOH HOH . F 5 HOH A 68 368 50 HOH HOH . F 5 HOH A 69 369 27 HOH HOH . F 5 HOH A 70 370 56 HOH HOH . F 5 HOH A 71 371 94 HOH HOH . F 5 HOH A 72 372 64 HOH HOH . F 5 HOH A 73 373 83 HOH HOH . F 5 HOH A 74 374 93 HOH HOH . F 5 HOH A 75 375 52 HOH HOH . F 5 HOH A 76 376 17 HOH HOH . F 5 HOH A 77 377 45 HOH HOH . F 5 HOH A 78 378 86 HOH HOH . F 5 HOH A 79 379 63 HOH HOH . F 5 HOH A 80 380 53 HOH HOH . F 5 HOH A 81 381 103 HOH HOH . F 5 HOH A 82 382 55 HOH HOH . F 5 HOH A 83 383 110 HOH HOH . F 5 HOH A 84 384 76 HOH HOH . F 5 HOH A 85 385 99 HOH HOH . F 5 HOH A 86 386 78 HOH HOH . F 5 HOH A 87 387 65 HOH HOH . F 5 HOH A 88 388 59 HOH HOH . F 5 HOH A 89 389 66 HOH HOH . F 5 HOH A 90 390 42 HOH HOH . F 5 HOH A 91 391 48 HOH HOH . F 5 HOH A 92 392 46 HOH HOH . F 5 HOH A 93 393 82 HOH HOH . F 5 HOH A 94 394 67 HOH HOH . F 5 HOH A 95 395 61 HOH HOH . F 5 HOH A 96 396 88 HOH HOH . F 5 HOH A 97 397 85 HOH HOH . F 5 HOH A 98 398 91 HOH HOH . F 5 HOH A 99 399 35 HOH HOH . F 5 HOH A 100 400 18 HOH HOH . F 5 HOH A 101 401 62 HOH HOH . F 5 HOH A 102 402 92 HOH HOH . F 5 HOH A 103 403 105 HOH HOH . F 5 HOH A 104 404 90 HOH HOH . F 5 HOH A 105 405 28 HOH HOH . F 5 HOH A 106 406 57 HOH HOH . F 5 HOH A 107 407 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . E 4 1.962 5.474 5.366 1 14.86 ? N ARG 204 A 1 HETATM 2 C CA ARG . . . E 4 1.036 6.428 4.757 1 14.86 ? CA ARG 204 A 1 HETATM 3 C C ARG . . . E 4 -0.252 6.535 5.558 1 17.67 ? C ARG 204 A 1 HETATM 4 O O ARG . . . E 4 -1.049 7.447 5.333 1 16.39 ? O ARG 204 A 1 HETATM 5 C CB ARG . . . E 4 0.709 6.016 3.322 1 14.86 ? CB ARG 204 A 1 HETATM 6 C CG ARG . . . E 4 0.035 4.657 3.203 1 14.86 ? CG ARG 204 A 1 HETATM 7 C CD ARG . . . E 4 -0.12 4.28 1.742 1 15.86 ? CD ARG 204 A 1 HETATM 8 N NE ARG . . . E 4 -0.852 3.03 1.543 1 14.86 ? NE ARG 204 A 1 HETATM 9 C CZ ARG . . . E 4 -0.316 1.818 1.651 1 16.3 ? CZ ARG 204 A 1 HETATM 10 N NH1 ARG . . . E 4 0.964 1.681 1.967 1 14.86 ? NH1 ARG 204 A 1 HETATM 11 N NH2 ARG . . . E 4 -1.056 0.737 1.44 1 14.86 ? NH2 ARG 204 A 1 HETATM 12 O OXT ARG . . . E 4 -0.532 5.73 6.439 1 14.86 ? OXT ARG 204 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #