data_6MJM
#
_model_server_result.job_id            OPv87-yHVPMc0PCv6bI8_Q 
_model_server_result.datetime_utc      '2024-11-23 19:10:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mjm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    6MJM 
#
_exptl.entry_id    6MJM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MJM 
_cell.length_a            75.67 
_cell.length_b            100.69 
_cell.length_c            136.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 F O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 142 n n 
CHA C4D HEM doub 143 n n 
CHA HHA HEM sing 144 n n 
CHB C4A HEM sing 145 n n 
CHB C1B HEM doub 146 n n 
CHB HHB HEM sing 147 n n 
CHC C4B HEM sing 148 n n 
CHC C1C HEM doub 149 n n 
CHC HHC HEM sing 150 n n 
CHD C4C HEM doub 151 n n 
CHD C1D HEM sing 152 n n 
CHD HHD HEM sing 153 n n 
C1A C2A HEM doub 154 n y 
C1A NA HEM sing 155 n y 
C2A C3A HEM sing 156 n y 
C2A CAA HEM sing 157 n n 
C3A C4A HEM doub 158 n y 
C3A CMA HEM sing 159 n n 
C4A NA HEM sing 160 n y 
CMA HMA HEM sing 161 n n 
CMA HMAA HEM sing 162 n n 
CMA HMAB HEM sing 163 n n 
CAA CBA HEM sing 164 n n 
CAA HAA HEM sing 165 n n 
CAA HAAA HEM sing 166 n n 
CBA CGA HEM sing 167 n n 
CBA HBA HEM sing 168 n n 
CBA HBAA HEM sing 169 n n 
CGA O1A HEM doub 170 n n 
CGA O2A HEM sing 171 n n 
C1B C2B HEM sing 172 n n 
C1B NB HEM sing 173 n n 
C2B C3B HEM doub 174 n n 
C2B CMB HEM sing 175 n n 
C3B C4B HEM sing 176 n n 
C3B CAB HEM sing 177 n n 
C4B NB HEM doub 178 n n 
CMB HMB HEM sing 179 n n 
CMB HMBA HEM sing 180 n n 
CMB HMBB HEM sing 181 n n 
CAB CBB HEM doub 182 n n 
CAB HAB HEM sing 183 n n 
CBB HBB HEM sing 184 n n 
CBB HBBA HEM sing 185 n n 
C1C C2C HEM sing 186 n y 
C1C NC HEM sing 187 n y 
C2C C3C HEM doub 188 n y 
C2C CMC HEM sing 189 n n 
C3C C4C HEM sing 190 n y 
C3C CAC HEM sing 191 n n 
C4C NC HEM sing 192 n y 
CMC HMC HEM sing 193 n n 
CMC HMCA HEM sing 194 n n 
CMC HMCB HEM sing 195 n n 
CAC CBC HEM doub 196 n n 
CAC HAC HEM sing 197 n n 
CBC HBC HEM sing 198 n n 
CBC HBCA HEM sing 199 n n 
C1D C2D HEM sing 200 n n 
C1D ND HEM doub 201 n n 
C2D C3D HEM doub 202 n n 
C2D CMD HEM sing 203 n n 
C3D C4D HEM sing 204 n n 
C3D CAD HEM sing 205 n n 
C4D ND HEM sing 206 n n 
CMD HMD HEM sing 207 n n 
CMD HMDA HEM sing 208 n n 
CMD HMDB HEM sing 209 n n 
CAD CBD HEM sing 210 n n 
CAD HAD HEM sing 211 n n 
CAD HADA HEM sing 212 n n 
CBD CGD HEM sing 213 n n 
CBD HBD HEM sing 214 n n 
CBD HBDA HEM sing 215 n n 
CGD O1D HEM doub 216 n n 
CGD O2D HEM sing 217 n n 
O2A H2A HEM sing 218 n n 
O2D H2D HEM sing 219 n n 
FE NA HEM sing 220 n n 
FE NB HEM sing 221 n n 
FE NC HEM sing 222 n n 
FE ND HEM sing 223 n n 
#
_atom_sites.entry_id                     6MJM 
_atom_sites.fract_transf_matrix[1][1]    0.013215 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 GOL A 1 602 501 GOL GOL . 
D 3 GOL A 1 603 502 GOL GOL . 
E 3 GOL A 1 604 503 GOL GOL . 
F 4 HOH A 1 701 628 HOH HOH . 
F 4 HOH A 2 702 623 HOH HOH . 
F 4 HOH A 3 703 637 HOH HOH . 
F 4 HOH A 4 704 646 HOH HOH . 
F 4 HOH A 5 705 619 HOH HOH . 
F 4 HOH A 6 706 634 HOH HOH . 
F 4 HOH A 7 707 640 HOH HOH . 
F 4 HOH A 8 708 617 HOH HOH . 
F 4 HOH A 9 709 605 HOH HOH . 
F 4 HOH A 10 710 620 HOH HOH . 
F 4 HOH A 11 711 611 HOH HOH . 
F 4 HOH A 12 712 649 HOH HOH . 
F 4 HOH A 13 713 603 HOH HOH . 
F 4 HOH A 14 714 629 HOH HOH . 
F 4 HOH A 15 715 615 HOH HOH . 
F 4 HOH A 16 716 614 HOH HOH . 
F 4 HOH A 17 717 604 HOH HOH . 
F 4 HOH A 18 718 631 HOH HOH . 
F 4 HOH A 19 719 625 HOH HOH . 
F 4 HOH A 20 720 639 HOH HOH . 
F 4 HOH A 21 721 624 HOH HOH . 
F 4 HOH A 22 722 602 HOH HOH . 
F 4 HOH A 23 723 607 HOH HOH . 
F 4 HOH A 24 724 632 HOH HOH . 
F 4 HOH A 25 725 616 HOH HOH . 
F 4 HOH A 26 726 641 HOH HOH . 
F 4 HOH A 27 727 633 HOH HOH . 
F 4 HOH A 28 728 630 HOH HOH . 
F 4 HOH A 29 729 600 HOH HOH . 
F 4 HOH A 30 730 609 HOH HOH . 
F 4 HOH A 31 731 613 HOH HOH . 
F 4 HOH A 32 732 636 HOH HOH . 
F 4 HOH A 33 733 612 HOH HOH . 
F 4 HOH A 34 734 635 HOH HOH . 
F 4 HOH A 35 735 622 HOH HOH . 
F 4 HOH A 36 736 618 HOH HOH . 
F 4 HOH A 37 737 606 HOH HOH . 
F 4 HOH A 38 738 610 HOH HOH . 
F 4 HOH A 39 739 626 HOH HOH . 
F 4 HOH A 40 740 643 HOH HOH . 
F 4 HOH A 41 741 638 HOH HOH . 
F 4 HOH A 42 742 601 HOH HOH . 
F 4 HOH A 43 743 647 HOH HOH . 
F 4 HOH A 44 744 627 HOH HOH . 
F 4 HOH A 45 745 608 HOH HOH . 
F 4 HOH A 46 746 644 HOH HOH . 
F 4 HOH A 47 747 642 HOH HOH . 
F 4 HOH A 48 748 645 HOH HOH . 
F 4 HOH A 49 749 648 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 22.762 20.44 11.408 1 45.99 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 21.635 23.005 15.365 1 45.3 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 21.358 27.079 12.644 1 44.89 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 22.499 24.468 8.732 1 46.54 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 22.491 20.816 12.703 1 47.01 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 22.505 19.906 13.778 1 46.78 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 22.185 20.606 14.893 1 44.89 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 21.985 21.962 14.519 1 46.62 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 22.083 20.007 16.274 1 40.59 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 22.797 18.417 13.709 1 50.46 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 24.297 18.095 13.611 1 49.36 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 24.593 16.669 14.038 1 50.79 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 25.613 16.379 14.718 1 49.22 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 23.823 15.748 13.705 1 50.92 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 21.441 24.319 14.916 1 45.38 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 21.028 25.348 15.807 1 41.53 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 20.947 26.509 15.081 1 42.82 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 21.326 26.143 13.692 1 46.75 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 20.754 25.15 17.275 1 41.18 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 20.557 27.869 15.531 1 45.27 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 20.805 28.345 16.755 1 42.72 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 21.679 26.73 11.334 1 44.72 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 21.789 27.622 10.24 1 48.93 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 22.129 26.86 9.123 1 47.49 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 22.207 25.51 9.561 1 45.94 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 21.586 29.125 10.329 1 46.42 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 22.342 27.272 7.722 1 52.88 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 23.142 28.268 7.371 1 60.41 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 22.618 23.162 9.205 1 46.15 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 22.879 22.071 8.264 1 44.07 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 22.963 20.945 8.988 1 45.23 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 22.749 21.366 10.388 1 43.64 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 23.014 22.196 6.772 1 49.89 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 23.216 19.555 8.439 1 47.7 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 24.718 19.236 8.433 1 51.23 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 25.098 18.023 7.604 1 50.35 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 26.134 18.055 6.909 1 52.08 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 24.42 16.975 7.604 1 50.12 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 22.16 22.074 13.166 1 48.12 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 21.618 24.826 13.683 1 42.7 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 21.936 25.459 10.903 1 45.79 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 22.563 22.702 10.468 1 42.95 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 22.217 23.71 12.016 1 48.2 3 FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#