data_6MJM # _model_server_result.job_id EXB7Ye9ZtoiOiFhfBICTcg _model_server_result.datetime_utc '2024-11-11 05:15:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mjm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6MJM # _exptl.entry_id 6MJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MJM _cell.length_a 75.67 _cell.length_b 100.69 _cell.length_c 136.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 F O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 6MJM _atom_sites.fract_transf_matrix[1][1] 0.013215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 501 GOL GOL . D 3 GOL A 1 603 502 GOL GOL . E 3 GOL A 1 604 503 GOL GOL . F 4 HOH A 1 701 628 HOH HOH . F 4 HOH A 2 702 623 HOH HOH . F 4 HOH A 3 703 637 HOH HOH . F 4 HOH A 4 704 646 HOH HOH . F 4 HOH A 5 705 619 HOH HOH . F 4 HOH A 6 706 634 HOH HOH . F 4 HOH A 7 707 640 HOH HOH . F 4 HOH A 8 708 617 HOH HOH . F 4 HOH A 9 709 605 HOH HOH . F 4 HOH A 10 710 620 HOH HOH . F 4 HOH A 11 711 611 HOH HOH . F 4 HOH A 12 712 649 HOH HOH . F 4 HOH A 13 713 603 HOH HOH . F 4 HOH A 14 714 629 HOH HOH . F 4 HOH A 15 715 615 HOH HOH . F 4 HOH A 16 716 614 HOH HOH . F 4 HOH A 17 717 604 HOH HOH . F 4 HOH A 18 718 631 HOH HOH . F 4 HOH A 19 719 625 HOH HOH . F 4 HOH A 20 720 639 HOH HOH . F 4 HOH A 21 721 624 HOH HOH . F 4 HOH A 22 722 602 HOH HOH . F 4 HOH A 23 723 607 HOH HOH . F 4 HOH A 24 724 632 HOH HOH . F 4 HOH A 25 725 616 HOH HOH . F 4 HOH A 26 726 641 HOH HOH . F 4 HOH A 27 727 633 HOH HOH . F 4 HOH A 28 728 630 HOH HOH . F 4 HOH A 29 729 600 HOH HOH . F 4 HOH A 30 730 609 HOH HOH . F 4 HOH A 31 731 613 HOH HOH . F 4 HOH A 32 732 636 HOH HOH . F 4 HOH A 33 733 612 HOH HOH . F 4 HOH A 34 734 635 HOH HOH . F 4 HOH A 35 735 622 HOH HOH . F 4 HOH A 36 736 618 HOH HOH . F 4 HOH A 37 737 606 HOH HOH . F 4 HOH A 38 738 610 HOH HOH . F 4 HOH A 39 739 626 HOH HOH . F 4 HOH A 40 740 643 HOH HOH . F 4 HOH A 41 741 638 HOH HOH . F 4 HOH A 42 742 601 HOH HOH . F 4 HOH A 43 743 647 HOH HOH . F 4 HOH A 44 744 627 HOH HOH . F 4 HOH A 45 745 608 HOH HOH . F 4 HOH A 46 746 644 HOH HOH . F 4 HOH A 47 747 642 HOH HOH . F 4 HOH A 48 748 645 HOH HOH . F 4 HOH A 49 749 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 22.762 20.44 11.408 1 45.99 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 21.635 23.005 15.365 1 45.3 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 21.358 27.079 12.644 1 44.89 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 22.499 24.468 8.732 1 46.54 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 22.491 20.816 12.703 1 47.01 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 22.505 19.906 13.778 1 46.78 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 22.185 20.606 14.893 1 44.89 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 21.985 21.962 14.519 1 46.62 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 22.083 20.007 16.274 1 40.59 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 22.797 18.417 13.709 1 50.46 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 24.297 18.095 13.611 1 49.36 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 24.593 16.669 14.038 1 50.79 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 25.613 16.379 14.718 1 49.22 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 23.823 15.748 13.705 1 50.92 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 21.441 24.319 14.916 1 45.38 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 21.028 25.348 15.807 1 41.53 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 20.947 26.509 15.081 1 42.82 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 21.326 26.143 13.692 1 46.75 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 20.754 25.15 17.275 1 41.18 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 20.557 27.869 15.531 1 45.27 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 20.805 28.345 16.755 1 42.72 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 21.679 26.73 11.334 1 44.72 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 21.789 27.622 10.24 1 48.93 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 22.129 26.86 9.123 1 47.49 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 22.207 25.51 9.561 1 45.94 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 21.586 29.125 10.329 1 46.42 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 22.342 27.272 7.722 1 52.88 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 23.142 28.268 7.371 1 60.41 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 22.618 23.162 9.205 1 46.15 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 22.879 22.071 8.264 1 44.07 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 22.963 20.945 8.988 1 45.23 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 22.749 21.366 10.388 1 43.64 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 23.014 22.196 6.772 1 49.89 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 23.216 19.555 8.439 1 47.7 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 24.718 19.236 8.433 1 51.23 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 25.098 18.023 7.604 1 50.35 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 26.134 18.055 6.909 1 52.08 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 24.42 16.975 7.604 1 50.12 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 22.16 22.074 13.166 1 48.12 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 21.618 24.826 13.683 1 42.7 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 21.936 25.459 10.903 1 45.79 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 22.563 22.702 10.468 1 42.95 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 22.217 23.71 12.016 1 48.2 3 FE HEM 601 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #