data_6MJM # _model_server_result.job_id 9rgX_neK11-YK0O7eBmQoA _model_server_result.datetime_utc '2024-11-13 14:45:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mjm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 6MJM # _exptl.entry_id 6MJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MJM _cell.length_a 75.67 _cell.length_b 100.69 _cell.length_c 136.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 420 A CYS 441 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 F O HOH . A HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6MJM _atom_sites.fract_transf_matrix[1][1] 0.013215 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 GOL A 1 602 501 GOL GOL . D 3 GOL A 1 603 502 GOL GOL . E 3 GOL A 1 604 503 GOL GOL . F 4 HOH A 1 701 628 HOH HOH . F 4 HOH A 2 702 623 HOH HOH . F 4 HOH A 3 703 637 HOH HOH . F 4 HOH A 4 704 646 HOH HOH . F 4 HOH A 5 705 619 HOH HOH . F 4 HOH A 6 706 634 HOH HOH . F 4 HOH A 7 707 640 HOH HOH . F 4 HOH A 8 708 617 HOH HOH . F 4 HOH A 9 709 605 HOH HOH . F 4 HOH A 10 710 620 HOH HOH . F 4 HOH A 11 711 611 HOH HOH . F 4 HOH A 12 712 649 HOH HOH . F 4 HOH A 13 713 603 HOH HOH . F 4 HOH A 14 714 629 HOH HOH . F 4 HOH A 15 715 615 HOH HOH . F 4 HOH A 16 716 614 HOH HOH . F 4 HOH A 17 717 604 HOH HOH . F 4 HOH A 18 718 631 HOH HOH . F 4 HOH A 19 719 625 HOH HOH . F 4 HOH A 20 720 639 HOH HOH . F 4 HOH A 21 721 624 HOH HOH . F 4 HOH A 22 722 602 HOH HOH . F 4 HOH A 23 723 607 HOH HOH . F 4 HOH A 24 724 632 HOH HOH . F 4 HOH A 25 725 616 HOH HOH . F 4 HOH A 26 726 641 HOH HOH . F 4 HOH A 27 727 633 HOH HOH . F 4 HOH A 28 728 630 HOH HOH . F 4 HOH A 29 729 600 HOH HOH . F 4 HOH A 30 730 609 HOH HOH . F 4 HOH A 31 731 613 HOH HOH . F 4 HOH A 32 732 636 HOH HOH . F 4 HOH A 33 733 612 HOH HOH . F 4 HOH A 34 734 635 HOH HOH . F 4 HOH A 35 735 622 HOH HOH . F 4 HOH A 36 736 618 HOH HOH . F 4 HOH A 37 737 606 HOH HOH . F 4 HOH A 38 738 610 HOH HOH . F 4 HOH A 39 739 626 HOH HOH . F 4 HOH A 40 740 643 HOH HOH . F 4 HOH A 41 741 638 HOH HOH . F 4 HOH A 42 742 601 HOH HOH . F 4 HOH A 43 743 647 HOH HOH . F 4 HOH A 44 744 627 HOH HOH . F 4 HOH A 45 745 608 HOH HOH . F 4 HOH A 46 746 644 HOH HOH . F 4 HOH A 47 747 642 HOH HOH . F 4 HOH A 48 748 645 HOH HOH . F 4 HOH A 49 749 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 19.279 18.972 10.924 1 73.33 ? C1 GOL 604 A 1 HETATM 2 O O1 GOL . . . E 3 19.347 17.618 10.583 1 72.34 ? O1 GOL 604 A 1 HETATM 3 C C2 GOL . . . E 3 18.474 19.069 12.258 1 71.22 ? C2 GOL 604 A 1 HETATM 4 O O2 GOL . . . E 3 18.992 18.246 13.224 1 68.17 ? O2 GOL 604 A 1 HETATM 5 C C3 GOL . . . E 3 18.554 20.556 12.688 1 70.12 ? C3 GOL 604 A 1 HETATM 6 O O3 GOL . . . E 3 17.34 20.877 13.29 1 68.94 ? O3 GOL 604 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #