data_6MJP # _model_server_result.job_id aEL4wLn64lhq_DS0fidg_A _model_server_result.datetime_utc '2024-11-23 09:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":304}' # _entry.id 6MJP # _exptl.entry_id 6MJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.18 _cell.angle_gamma 90 _cell.entry_id 6MJP _cell.length_a 167.354 _cell.length_b 80.729 _cell.length_c 202.992 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 Q N N ? 10 R N N ? 10 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 112 A GLU 112 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A OD1 ASP 116 A ASP 116 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A OD2 ASP 116 A ASP 116 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc4 A OD1 ASN 196 A ASN 196 1_555 I CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 H CA CA . A CA 303 1_555 Y O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 I CA CA . A CA 304 1_555 B OD1 ASN 196 B ASN 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 I CA CA . A CA 304 1_555 Z O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 151 n n C1 C2 GOL sing 152 n n C1 H11 GOL sing 153 n n C1 H12 GOL sing 154 n n O1 HO1 GOL sing 155 n n C2 O2 GOL sing 156 n n C2 C3 GOL sing 157 n n C2 H2 GOL sing 158 n n O2 HO2 GOL sing 159 n n C3 O3 GOL sing 160 n n C3 H31 GOL sing 161 n n C3 H32 GOL sing 162 n n O3 HO3 GOL sing 163 n n # _atom_sites.entry_id 6MJP _atom_sites.fract_transf_matrix[1][1] 0.005975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CL A 1 301 2 CL CL . G 5 CL A 1 302 3 CL CL . H 6 CA A 1 303 4 CA CA . I 6 CA A 1 304 5 CA CA . J 5 CL A 1 305 6 CL CL . K 7 AE3 A 1 306 4 AE3 AE3 . L 7 AE3 A 1 307 8 AE3 AE3 . M 8 PG4 A 1 308 10 PG4 PG4 . N 5 CL B 1 301 1 CL CL . O 8 PG4 B 1 302 7 PG4 PG4 . P 9 PEG B 1 303 9 PEG PEG . Q 10 GOL B 1 304 12 GOL GOL . R 10 GOL B 1 305 13 GOL GOL . S 11 LMT F 1 401 1 LMT LMT . T 12 JU7 F 1 402 3 JU7 CG6 . U 11 LMT F 1 403 11 LMT LMT . V 13 MA4 G 1 401 2 MA4 CY6 . W 11 LMT G 1 402 5 LMT LMT . X 10 GOL G 1 403 14 GOL GOL . Y 14 HOH A 1 401 6 HOH HOH . Y 14 HOH A 2 402 10 HOH HOH . Y 14 HOH A 3 403 1 HOH HOH . Y 14 HOH A 4 404 33 HOH HOH . Y 14 HOH A 5 405 41 HOH HOH . Y 14 HOH A 6 406 24 HOH HOH . Y 14 HOH A 7 407 27 HOH HOH . Y 14 HOH A 8 408 51 HOH HOH . Y 14 HOH A 9 409 21 HOH HOH . Y 14 HOH A 10 410 35 HOH HOH . Y 14 HOH A 11 411 28 HOH HOH . Y 14 HOH A 12 412 55 HOH HOH . Y 14 HOH A 13 413 5 HOH HOH . Y 14 HOH A 14 414 44 HOH HOH . Y 14 HOH A 15 415 26 HOH HOH . Y 14 HOH A 16 416 31 HOH HOH . Y 14 HOH A 17 417 16 HOH HOH . Y 14 HOH A 18 418 34 HOH HOH . Y 14 HOH A 19 419 36 HOH HOH . Y 14 HOH A 20 420 17 HOH HOH . Y 14 HOH A 21 421 11 HOH HOH . Y 14 HOH A 22 422 22 HOH HOH . Y 14 HOH A 23 423 45 HOH HOH . Y 14 HOH A 24 424 18 HOH HOH . Y 14 HOH A 25 425 54 HOH HOH . Y 14 HOH A 26 426 25 HOH HOH . Y 14 HOH A 27 427 20 HOH HOH . Z 14 HOH B 1 401 37 HOH HOH . Z 14 HOH B 2 402 8 HOH HOH . Z 14 HOH B 3 403 19 HOH HOH . Z 14 HOH B 4 404 23 HOH HOH . Z 14 HOH B 5 405 29 HOH HOH . Z 14 HOH B 6 406 32 HOH HOH . Z 14 HOH B 7 407 46 HOH HOH . Z 14 HOH B 8 408 15 HOH HOH . Z 14 HOH B 9 409 3 HOH HOH . Z 14 HOH B 10 410 50 HOH HOH . Z 14 HOH B 11 411 39 HOH HOH . Z 14 HOH B 12 412 48 HOH HOH . Z 14 HOH B 13 413 47 HOH HOH . Z 14 HOH B 14 414 4 HOH HOH . Z 14 HOH B 15 415 38 HOH HOH . Z 14 HOH B 16 416 30 HOH HOH . Z 14 HOH B 17 417 42 HOH HOH . Z 14 HOH B 18 418 40 HOH HOH . AA 14 HOH C 1 201 14 HOH HOH . AA 14 HOH C 2 202 13 HOH HOH . BA 14 HOH F 1 501 12 HOH HOH . CA 14 HOH G 1 501 52 HOH HOH . CA 14 HOH G 2 502 43 HOH HOH . CA 14 HOH G 3 503 2 HOH HOH . CA 14 HOH G 4 504 53 HOH HOH . CA 14 HOH G 5 505 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . Q 10 2.291 17.385 23.693 1 120.87 ? C1 GOL 304 B 1 HETATM 2 O O1 GOL . . . Q 10 2.946 17.626 24.906 1 118.37 ? O1 GOL 304 B 1 HETATM 3 C C2 GOL . . . Q 10 3.381 17.41 22.562 1 124.92 ? C2 GOL 304 B 1 HETATM 4 O O2 GOL . . . Q 10 3.733 18.706 22.183 1 125.27 ? O2 GOL 304 B 1 HETATM 5 C C3 GOL . . . Q 10 2.815 16.546 21.376 1 122.28 ? C3 GOL 304 B 1 HETATM 6 O O3 GOL . . . Q 10 3.64 16.759 20.258 1 117.35 ? O3 GOL 304 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #