data_6MJP # _model_server_result.job_id pZP4vlvhfZHhvgyHtCqmGw _model_server_result.datetime_utc '2024-11-21 13:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":401}' # _entry.id 6MJP # _exptl.entry_id 6MJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.18 _cell.angle_gamma 90 _cell.entry_id 6MJP _cell.length_a 167.354 _cell.length_b 80.729 _cell.length_c 202.992 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 S N N ? 11 U N N ? 11 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 112 A GLU 112 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc2 A OD1 ASP 116 A ASP 116 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc3 A OD2 ASP 116 A ASP 116 1_555 H CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc4 A OD1 ASN 196 A ASN 196 1_555 I CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc5 H CA CA . A CA 303 1_555 Y O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc6 I CA CA . A CA 304 1_555 B OD1 ASN 196 B ASN 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc7 I CA CA . A CA 304 1_555 Z O HOH . B HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 288 n n C1B O1B LMT sing 289 n n C1B O5B LMT sing 290 n n C1B H1B LMT sing 291 n n C2B C3B LMT sing 292 n n C2B O2B LMT sing 293 n n C2B H2B LMT sing 294 n n C3B C4B LMT sing 295 n n C3B O3B LMT sing 296 n n C3B H3B LMT sing 297 n n C4B C5B LMT sing 298 n n C4B O4' LMT sing 299 n n C4B H4B LMT sing 300 n n C5B C6B LMT sing 301 n n C5B O5B LMT sing 302 n n C5B H5B LMT sing 303 n n C6B O6B LMT sing 304 n n C6B "H6'2" LMT sing 305 n n C6B "H6'1" LMT sing 306 n n O1B C4' LMT sing 307 n n O2B H2O1 LMT sing 308 n n O3B H3O1 LMT sing 309 n n O4' H4O1 LMT sing 310 n n O6B H6B LMT sing 311 n n C1' C2' LMT sing 312 n n C1' O1' LMT sing 313 n n C1' O5' LMT sing 314 n n C1' H1' LMT sing 315 n n C2' C3' LMT sing 316 n n C2' O2' LMT sing 317 n n C2' H2' LMT sing 318 n n C3' C4' LMT sing 319 n n C3' O3' LMT sing 320 n n C3' H3' LMT sing 321 n n C4' C5' LMT sing 322 n n C4' H4' LMT sing 323 n n C5' C6' LMT sing 324 n n C5' O5' LMT sing 325 n n C5' H5' LMT sing 326 n n C6' O6' LMT sing 327 n n C6' H6D LMT sing 328 n n C6' H6E LMT sing 329 n n O1' C1 LMT sing 330 n n O2' H2O2 LMT sing 331 n n O3' H3O2 LMT sing 332 n n O6' H6' LMT sing 333 n n C1 C2 LMT sing 334 n n C1 H12 LMT sing 335 n n C1 H11 LMT sing 336 n n C2 C3 LMT sing 337 n n C2 H22 LMT sing 338 n n C2 H21 LMT sing 339 n n C3 C4 LMT sing 340 n n C3 H32 LMT sing 341 n n C3 H31 LMT sing 342 n n C4 C5 LMT sing 343 n n C4 H42 LMT sing 344 n n C4 H41 LMT sing 345 n n C5 C6 LMT sing 346 n n C5 H52 LMT sing 347 n n C5 H51 LMT sing 348 n n C6 C7 LMT sing 349 n n C6 H62 LMT sing 350 n n C6 H61 LMT sing 351 n n C7 C8 LMT sing 352 n n C7 H72 LMT sing 353 n n C7 H71 LMT sing 354 n n C8 C9 LMT sing 355 n n C8 H82 LMT sing 356 n n C8 H81 LMT sing 357 n n C9 C10 LMT sing 358 n n C9 H92 LMT sing 359 n n C9 H91 LMT sing 360 n n C10 C11 LMT sing 361 n n C10 H102 LMT sing 362 n n C10 H101 LMT sing 363 n n C11 C12 LMT sing 364 n n C11 H112 LMT sing 365 n n C11 H111 LMT sing 366 n n C12 H123 LMT sing 367 n n C12 H122 LMT sing 368 n n C12 H121 LMT sing 369 n n # _atom_sites.entry_id 6MJP _atom_sites.fract_transf_matrix[1][1] 0.005975 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002436 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CL A 1 301 2 CL CL . G 5 CL A 1 302 3 CL CL . H 6 CA A 1 303 4 CA CA . I 6 CA A 1 304 5 CA CA . J 5 CL A 1 305 6 CL CL . K 7 AE3 A 1 306 4 AE3 AE3 . L 7 AE3 A 1 307 8 AE3 AE3 . M 8 PG4 A 1 308 10 PG4 PG4 . N 5 CL B 1 301 1 CL CL . O 8 PG4 B 1 302 7 PG4 PG4 . P 9 PEG B 1 303 9 PEG PEG . Q 10 GOL B 1 304 12 GOL GOL . R 10 GOL B 1 305 13 GOL GOL . S 11 LMT F 1 401 1 LMT LMT . T 12 JU7 F 1 402 3 JU7 CG6 . U 11 LMT F 1 403 11 LMT LMT . V 13 MA4 G 1 401 2 MA4 CY6 . W 11 LMT G 1 402 5 LMT LMT . X 10 GOL G 1 403 14 GOL GOL . Y 14 HOH A 1 401 6 HOH HOH . Y 14 HOH A 2 402 10 HOH HOH . Y 14 HOH A 3 403 1 HOH HOH . Y 14 HOH A 4 404 33 HOH HOH . Y 14 HOH A 5 405 41 HOH HOH . Y 14 HOH A 6 406 24 HOH HOH . Y 14 HOH A 7 407 27 HOH HOH . Y 14 HOH A 8 408 51 HOH HOH . Y 14 HOH A 9 409 21 HOH HOH . Y 14 HOH A 10 410 35 HOH HOH . Y 14 HOH A 11 411 28 HOH HOH . Y 14 HOH A 12 412 55 HOH HOH . Y 14 HOH A 13 413 5 HOH HOH . Y 14 HOH A 14 414 44 HOH HOH . Y 14 HOH A 15 415 26 HOH HOH . Y 14 HOH A 16 416 31 HOH HOH . Y 14 HOH A 17 417 16 HOH HOH . Y 14 HOH A 18 418 34 HOH HOH . Y 14 HOH A 19 419 36 HOH HOH . Y 14 HOH A 20 420 17 HOH HOH . Y 14 HOH A 21 421 11 HOH HOH . Y 14 HOH A 22 422 22 HOH HOH . Y 14 HOH A 23 423 45 HOH HOH . Y 14 HOH A 24 424 18 HOH HOH . Y 14 HOH A 25 425 54 HOH HOH . Y 14 HOH A 26 426 25 HOH HOH . Y 14 HOH A 27 427 20 HOH HOH . Z 14 HOH B 1 401 37 HOH HOH . Z 14 HOH B 2 402 8 HOH HOH . Z 14 HOH B 3 403 19 HOH HOH . Z 14 HOH B 4 404 23 HOH HOH . Z 14 HOH B 5 405 29 HOH HOH . Z 14 HOH B 6 406 32 HOH HOH . Z 14 HOH B 7 407 46 HOH HOH . Z 14 HOH B 8 408 15 HOH HOH . Z 14 HOH B 9 409 3 HOH HOH . Z 14 HOH B 10 410 50 HOH HOH . Z 14 HOH B 11 411 39 HOH HOH . Z 14 HOH B 12 412 48 HOH HOH . Z 14 HOH B 13 413 47 HOH HOH . Z 14 HOH B 14 414 4 HOH HOH . Z 14 HOH B 15 415 38 HOH HOH . Z 14 HOH B 16 416 30 HOH HOH . Z 14 HOH B 17 417 42 HOH HOH . Z 14 HOH B 18 418 40 HOH HOH . AA 14 HOH C 1 201 14 HOH HOH . AA 14 HOH C 2 202 13 HOH HOH . BA 14 HOH F 1 501 12 HOH HOH . CA 14 HOH G 1 501 52 HOH HOH . CA 14 HOH G 2 502 43 HOH HOH . CA 14 HOH G 3 503 2 HOH HOH . CA 14 HOH G 4 504 53 HOH HOH . CA 14 HOH G 5 505 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . S 11 36.447 13.908 33.31 1 170.32 ? C1B LMT 401 F 1 HETATM 2 C C2B LMT . . . S 11 35.301 12.922 33.628 1 171.26 ? C2B LMT 401 F 1 HETATM 3 C C3B LMT . . . S 11 35.166 11.854 32.521 1 174.85 ? C3B LMT 401 F 1 HETATM 4 C C4B LMT . . . S 11 35.109 12.512 31.117 1 175.27 ? C4B LMT 401 F 1 HETATM 5 C C5B LMT . . . S 11 36.327 13.446 30.998 1 176.61 ? C5B LMT 401 F 1 HETATM 6 C C6B LMT . . . S 11 36.37 14.084 29.609 1 175.06 ? C6B LMT 401 F 1 HETATM 7 O O1B LMT . . . S 11 37.682 13.283 33.499 1 162.63 ? O1B LMT 401 F 1 HETATM 8 O O2B LMT . . . S 11 35.568 12.344 34.847 1 169.48 ? O2B LMT 401 F 1 HETATM 9 O O3B LMT . . . S 11 34.099 11.028 32.755 1 176.49 ? O3B LMT 401 F 1 HETATM 10 O O4' LMT . . . S 11 35.162 11.56 30.121 1 173.48 ? O4' LMT 401 F 1 HETATM 11 O O5B LMT . . . S 11 36.338 14.425 32.012 1 175.82 ? O5B LMT 401 F 1 HETATM 12 O O6B LMT . . . S 11 37.017 15.296 29.653 1 174.11 ? O6B LMT 401 F 1 HETATM 13 C C1' LMT . . . S 11 41.046 13.764 35.871 1 133.15 ? C1' LMT 401 F 1 HETATM 14 C C2' LMT . . . S 11 39.774 13.3 36.611 1 143.04 ? C2' LMT 401 F 1 HETATM 15 C C3' LMT . . . S 11 38.726 12.782 35.605 1 143.03 ? C3' LMT 401 F 1 HETATM 16 C C4' LMT . . . S 11 38.512 13.828 34.498 1 150.54 ? C4' LMT 401 F 1 HETATM 17 C C5' LMT . . . S 11 39.916 14.076 33.907 1 144.02 ? C5' LMT 401 F 1 HETATM 18 C C6' LMT . . . S 11 39.933 14.865 32.626 1 144.97 ? C6' LMT 401 F 1 HETATM 19 O O1' LMT . . . S 11 41.922 14.363 36.732 1 117.62 ? O1' LMT 401 F 1 HETATM 20 O O2' LMT . . . S 11 40.129 12.261 37.424 1 153.44 ? O2' LMT 401 F 1 HETATM 21 O O3' LMT . . . S 11 37.558 12.498 36.246 1 137.8 ? O3' LMT 401 F 1 HETATM 22 O O5' LMT . . . S 11 40.712 14.711 34.868 1 138.22 ? O5' LMT 401 F 1 HETATM 23 O O6' LMT . . . S 11 39.56 16.142 32.969 1 147.82 ? O6' LMT 401 F 1 HETATM 24 C C1 LMT . . . S 11 41.359 15.022 37.841 1 104.58 ? C1 LMT 401 F 1 HETATM 25 C C2 LMT . . . S 11 42.161 14.558 39.019 1 98.46 ? C2 LMT 401 F 1 HETATM 26 C C3 LMT . . . S 11 42.077 15.423 40.237 1 96.8 ? C3 LMT 401 F 1 HETATM 27 C C4 LMT . . . S 11 43.301 15.192 41.082 1 100.32 ? C4 LMT 401 F 1 HETATM 28 C C5 LMT . . . S 11 43.09 15.72 42.467 1 102.52 ? C5 LMT 401 F 1 HETATM 29 C C6 LMT . . . S 11 44.352 15.671 43.273 1 101.01 ? C6 LMT 401 F 1 HETATM 30 C C7 LMT . . . S 11 44.075 15.986 44.716 1 98.4 ? C7 LMT 401 F 1 HETATM 31 C C8 LMT . . . S 11 45.365 16.044 45.471 1 101.8 ? C8 LMT 401 F 1 HETATM 32 C C9 LMT . . . S 11 45.179 16.241 46.942 1 103.04 ? C9 LMT 401 F 1 HETATM 33 C C10 LMT . . . S 11 46.522 16.51 47.569 1 102.56 ? C10 LMT 401 F 1 HETATM 34 C C11 LMT . . . S 11 46.895 17.961 47.495 1 106.46 ? C11 LMT 401 F 1 HETATM 35 C C12 LMT . . . S 11 48.066 18.293 48.367 1 108.28 ? C12 LMT 401 F 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #