data_6MJY # _model_server_result.job_id BY-otLHZI4dxYnFwzw9ZwA _model_server_result.datetime_utc '2024-11-01 14:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mjy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6MJY # _exptl.entry_id 6MJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.66 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "6-CHLOROPURINE RIBOSIDE,5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MJY _cell.length_a 88.53 _cell.length_b 88.53 _cell.length_c 84.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 177.06 177.06 0 3 'crystal symmetry operation' 3_755 -y+2,x,z 0 -1 0 1 0 0 0 0 1 177.06 0 0 4 'crystal symmetry operation' 4_575 y,-x+2,z 0 1 0 -1 0 0 0 0 1 0 177.06 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 Cl N4 O7 P 1' _chem_comp.formula_weight 367.66 _chem_comp.id CPR _chem_comp.mon_nstd_flag . _chem_comp.name "6-CHLOROPURINE RIBOSIDE, 5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CPR doub 70 n n P O2P CPR sing 71 n n P O3P CPR sing 72 n n P O5' CPR sing 73 n n O2P HOP2 CPR sing 74 n n O3P HOP3 CPR sing 75 n n O5' C5' CPR sing 76 n n C5' C4' CPR sing 77 n n C5' "H5'1" CPR sing 78 n n C5' "H5'2" CPR sing 79 n n C4' O4' CPR sing 80 n n C4' C3' CPR sing 81 n n C4' H4' CPR sing 82 n n O4' C1' CPR sing 83 n n C3' O3' CPR sing 84 n n C3' C2' CPR sing 85 n n C3' H3' CPR sing 86 n n O3' HO3' CPR sing 87 n n C2' O2' CPR sing 88 n n C2' C1' CPR sing 89 n n C2' H2' CPR sing 90 n n O2' HO2' CPR sing 91 n n C1' N9 CPR sing 92 n n C1' H1' CPR sing 93 n n N9 C8 CPR sing 94 n y N9 C4 CPR sing 95 n y C8 N7 CPR doub 96 n y C8 H8 CPR sing 97 n n N7 C5 CPR sing 98 n y C5 C6 CPR sing 99 n y C5 C4 CPR doub 100 n y C6 CL CPR sing 101 n n C6 N1 CPR doub 102 n y N1 C2 CPR sing 103 n y N1 HN1 CPR sing 104 n n C2 N3 CPR doub 105 n y C2 H2 CPR sing 106 n n N3 C4 CPR sing 107 n y # _atom_sites.entry_id 6MJY _atom_sites.fract_transf_matrix[1][1] 0.011296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CPR A 1 401 1 CPR LIG . C 3 HOH A 1 501 177 HOH HOH . C 3 HOH A 2 502 2 HOH HOH . C 3 HOH A 3 503 187 HOH HOH . C 3 HOH A 4 504 184 HOH HOH . C 3 HOH A 5 505 257 HOH HOH . C 3 HOH A 6 506 176 HOH HOH . C 3 HOH A 7 507 256 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 100 HOH HOH . C 3 HOH A 10 510 204 HOH HOH . C 3 HOH A 11 511 12 HOH HOH . C 3 HOH A 12 512 76 HOH HOH . C 3 HOH A 13 513 64 HOH HOH . C 3 HOH A 14 514 94 HOH HOH . C 3 HOH A 15 515 149 HOH HOH . C 3 HOH A 16 516 238 HOH HOH . C 3 HOH A 17 517 36 HOH HOH . C 3 HOH A 18 518 169 HOH HOH . C 3 HOH A 19 519 236 HOH HOH . C 3 HOH A 20 520 80 HOH HOH . C 3 HOH A 21 521 159 HOH HOH . C 3 HOH A 22 522 99 HOH HOH . C 3 HOH A 23 523 190 HOH HOH . C 3 HOH A 24 524 135 HOH HOH . C 3 HOH A 25 525 202 HOH HOH . C 3 HOH A 26 526 62 HOH HOH . C 3 HOH A 27 527 230 HOH HOH . C 3 HOH A 28 528 35 HOH HOH . C 3 HOH A 29 529 133 HOH HOH . C 3 HOH A 30 530 118 HOH HOH . C 3 HOH A 31 531 105 HOH HOH . C 3 HOH A 32 532 96 HOH HOH . C 3 HOH A 33 533 5 HOH HOH . C 3 HOH A 34 534 120 HOH HOH . C 3 HOH A 35 535 107 HOH HOH . C 3 HOH A 36 536 141 HOH HOH . C 3 HOH A 37 537 41 HOH HOH . C 3 HOH A 38 538 225 HOH HOH . C 3 HOH A 39 539 34 HOH HOH . C 3 HOH A 40 540 237 HOH HOH . C 3 HOH A 41 541 44 HOH HOH . C 3 HOH A 42 542 124 HOH HOH . C 3 HOH A 43 543 28 HOH HOH . C 3 HOH A 44 544 77 HOH HOH . C 3 HOH A 45 545 82 HOH HOH . C 3 HOH A 46 546 17 HOH HOH . C 3 HOH A 47 547 93 HOH HOH . C 3 HOH A 48 548 15 HOH HOH . C 3 HOH A 49 549 115 HOH HOH . C 3 HOH A 50 550 194 HOH HOH . C 3 HOH A 51 551 7 HOH HOH . C 3 HOH A 52 552 137 HOH HOH . C 3 HOH A 53 553 54 HOH HOH . C 3 HOH A 54 554 21 HOH HOH . C 3 HOH A 55 555 125 HOH HOH . C 3 HOH A 56 556 33 HOH HOH . C 3 HOH A 57 557 9 HOH HOH . C 3 HOH A 58 558 4 HOH HOH . C 3 HOH A 59 559 97 HOH HOH . C 3 HOH A 60 560 140 HOH HOH . C 3 HOH A 61 561 27 HOH HOH . C 3 HOH A 62 562 173 HOH HOH . C 3 HOH A 63 563 37 HOH HOH . C 3 HOH A 64 564 24 HOH HOH . C 3 HOH A 65 565 10 HOH HOH . C 3 HOH A 66 566 79 HOH HOH . C 3 HOH A 67 567 255 HOH HOH . C 3 HOH A 68 568 42 HOH HOH . C 3 HOH A 69 569 11 HOH HOH . C 3 HOH A 70 570 13 HOH HOH . C 3 HOH A 71 571 78 HOH HOH . C 3 HOH A 72 572 92 HOH HOH . C 3 HOH A 73 573 163 HOH HOH . C 3 HOH A 74 574 22 HOH HOH . C 3 HOH A 75 575 198 HOH HOH . C 3 HOH A 76 576 103 HOH HOH . C 3 HOH A 77 577 191 HOH HOH . C 3 HOH A 78 578 6 HOH HOH . C 3 HOH A 79 579 49 HOH HOH . C 3 HOH A 80 580 113 HOH HOH . C 3 HOH A 81 581 98 HOH HOH . C 3 HOH A 82 582 71 HOH HOH . C 3 HOH A 83 583 142 HOH HOH . C 3 HOH A 84 584 145 HOH HOH . C 3 HOH A 85 585 210 HOH HOH . C 3 HOH A 86 586 201 HOH HOH . C 3 HOH A 87 587 117 HOH HOH . C 3 HOH A 88 588 20 HOH HOH . C 3 HOH A 89 589 122 HOH HOH . C 3 HOH A 90 590 87 HOH HOH . C 3 HOH A 91 591 171 HOH HOH . C 3 HOH A 92 592 16 HOH HOH . C 3 HOH A 93 593 130 HOH HOH . C 3 HOH A 94 594 200 HOH HOH . C 3 HOH A 95 595 74 HOH HOH . C 3 HOH A 96 596 119 HOH HOH . C 3 HOH A 97 597 143 HOH HOH . C 3 HOH A 98 598 32 HOH HOH . C 3 HOH A 99 599 59 HOH HOH . C 3 HOH A 100 600 45 HOH HOH . C 3 HOH A 101 601 63 HOH HOH . C 3 HOH A 102 602 38 HOH HOH . C 3 HOH A 103 603 58 HOH HOH . C 3 HOH A 104 604 69 HOH HOH . C 3 HOH A 105 605 51 HOH HOH . C 3 HOH A 106 606 161 HOH HOH . C 3 HOH A 107 607 18 HOH HOH . C 3 HOH A 108 608 170 HOH HOH . C 3 HOH A 109 609 129 HOH HOH . C 3 HOH A 110 610 68 HOH HOH . C 3 HOH A 111 611 47 HOH HOH . C 3 HOH A 112 612 43 HOH HOH . C 3 HOH A 113 613 126 HOH HOH . C 3 HOH A 114 614 25 HOH HOH . C 3 HOH A 115 615 147 HOH HOH . C 3 HOH A 116 616 50 HOH HOH . C 3 HOH A 117 617 206 HOH HOH . C 3 HOH A 118 618 132 HOH HOH . C 3 HOH A 119 619 55 HOH HOH . C 3 HOH A 120 620 172 HOH HOH . C 3 HOH A 121 621 14 HOH HOH . C 3 HOH A 122 622 31 HOH HOH . C 3 HOH A 123 623 60 HOH HOH . C 3 HOH A 124 624 61 HOH HOH . C 3 HOH A 125 625 30 HOH HOH . C 3 HOH A 126 626 154 HOH HOH . C 3 HOH A 127 627 240 HOH HOH . C 3 HOH A 128 628 242 HOH HOH . C 3 HOH A 129 629 29 HOH HOH . C 3 HOH A 130 630 209 HOH HOH . C 3 HOH A 131 631 110 HOH HOH . C 3 HOH A 132 632 188 HOH HOH . C 3 HOH A 133 633 109 HOH HOH . C 3 HOH A 134 634 26 HOH HOH . C 3 HOH A 135 635 121 HOH HOH . C 3 HOH A 136 636 156 HOH HOH . C 3 HOH A 137 637 86 HOH HOH . C 3 HOH A 138 638 116 HOH HOH . C 3 HOH A 139 639 65 HOH HOH . C 3 HOH A 140 640 23 HOH HOH . C 3 HOH A 141 641 83 HOH HOH . C 3 HOH A 142 642 178 HOH HOH . C 3 HOH A 143 643 195 HOH HOH . C 3 HOH A 144 644 1 HOH HOH . C 3 HOH A 145 645 89 HOH HOH . C 3 HOH A 146 646 19 HOH HOH . C 3 HOH A 147 647 67 HOH HOH . C 3 HOH A 148 648 144 HOH HOH . C 3 HOH A 149 649 48 HOH HOH . C 3 HOH A 150 650 114 HOH HOH . C 3 HOH A 151 651 46 HOH HOH . C 3 HOH A 152 652 39 HOH HOH . C 3 HOH A 153 653 40 HOH HOH . C 3 HOH A 154 654 127 HOH HOH . C 3 HOH A 155 655 150 HOH HOH . C 3 HOH A 156 656 101 HOH HOH . C 3 HOH A 157 657 213 HOH HOH . C 3 HOH A 158 658 75 HOH HOH . C 3 HOH A 159 659 104 HOH HOH . C 3 HOH A 160 660 192 HOH HOH . C 3 HOH A 161 661 72 HOH HOH . C 3 HOH A 162 662 146 HOH HOH . C 3 HOH A 163 663 73 HOH HOH . C 3 HOH A 164 664 179 HOH HOH . C 3 HOH A 165 665 180 HOH HOH . C 3 HOH A 166 666 66 HOH HOH . C 3 HOH A 167 667 56 HOH HOH . C 3 HOH A 168 668 207 HOH HOH . C 3 HOH A 169 669 196 HOH HOH . C 3 HOH A 170 670 244 HOH HOH . C 3 HOH A 171 671 162 HOH HOH . C 3 HOH A 172 672 183 HOH HOH . C 3 HOH A 173 673 151 HOH HOH . C 3 HOH A 174 674 91 HOH HOH . C 3 HOH A 175 675 174 HOH HOH . C 3 HOH A 176 676 251 HOH HOH . C 3 HOH A 177 677 134 HOH HOH . C 3 HOH A 178 678 235 HOH HOH . C 3 HOH A 179 679 111 HOH HOH . C 3 HOH A 180 680 70 HOH HOH . C 3 HOH A 181 681 3 HOH HOH . C 3 HOH A 182 682 166 HOH HOH . C 3 HOH A 183 683 57 HOH HOH . C 3 HOH A 184 684 223 HOH HOH . C 3 HOH A 185 685 217 HOH HOH . C 3 HOH A 186 686 224 HOH HOH . C 3 HOH A 187 687 108 HOH HOH . C 3 HOH A 188 688 131 HOH HOH . C 3 HOH A 189 689 208 HOH HOH . C 3 HOH A 190 690 193 HOH HOH . C 3 HOH A 191 691 167 HOH HOH . C 3 HOH A 192 692 215 HOH HOH . C 3 HOH A 193 693 254 HOH HOH . C 3 HOH A 194 694 252 HOH HOH . C 3 HOH A 195 695 181 HOH HOH . C 3 HOH A 196 696 148 HOH HOH . C 3 HOH A 197 697 81 HOH HOH . C 3 HOH A 198 698 250 HOH HOH . C 3 HOH A 199 699 233 HOH HOH . C 3 HOH A 200 700 84 HOH HOH . C 3 HOH A 201 701 175 HOH HOH . C 3 HOH A 202 702 85 HOH HOH . C 3 HOH A 203 703 214 HOH HOH . C 3 HOH A 204 704 185 HOH HOH . C 3 HOH A 205 705 95 HOH HOH . C 3 HOH A 206 706 221 HOH HOH . C 3 HOH A 207 707 239 HOH HOH . C 3 HOH A 208 708 248 HOH HOH . C 3 HOH A 209 709 152 HOH HOH . C 3 HOH A 210 710 128 HOH HOH . C 3 HOH A 211 711 182 HOH HOH . C 3 HOH A 212 712 212 HOH HOH . C 3 HOH A 213 713 220 HOH HOH . C 3 HOH A 214 714 186 HOH HOH . C 3 HOH A 215 715 165 HOH HOH . C 3 HOH A 216 716 218 HOH HOH . C 3 HOH A 217 717 189 HOH HOH . C 3 HOH A 218 718 164 HOH HOH . C 3 HOH A 219 719 123 HOH HOH . C 3 HOH A 220 720 246 HOH HOH . C 3 HOH A 221 721 258 HOH HOH . C 3 HOH A 222 722 232 HOH HOH . C 3 HOH A 223 723 219 HOH HOH . C 3 HOH A 224 724 155 HOH HOH . C 3 HOH A 225 725 216 HOH HOH . C 3 HOH A 226 726 158 HOH HOH . C 3 HOH A 227 727 228 HOH HOH . C 3 HOH A 228 728 234 HOH HOH . C 3 HOH A 229 729 102 HOH HOH . C 3 HOH A 230 730 139 HOH HOH . C 3 HOH A 231 731 211 HOH HOH . C 3 HOH A 232 732 136 HOH HOH . C 3 HOH A 233 733 106 HOH HOH . C 3 HOH A 234 734 53 HOH HOH . C 3 HOH A 235 735 168 HOH HOH . C 3 HOH A 236 736 88 HOH HOH . C 3 HOH A 237 737 90 HOH HOH . C 3 HOH A 238 738 203 HOH HOH . C 3 HOH A 239 739 157 HOH HOH . C 3 HOH A 240 740 112 HOH HOH . C 3 HOH A 241 741 153 HOH HOH . C 3 HOH A 242 742 241 HOH HOH . C 3 HOH A 243 743 197 HOH HOH . C 3 HOH A 244 744 222 HOH HOH . C 3 HOH A 245 745 231 HOH HOH . C 3 HOH A 246 746 243 HOH HOH . C 3 HOH A 247 747 227 HOH HOH . C 3 HOH A 248 748 229 HOH HOH . C 3 HOH A 249 749 160 HOH HOH . C 3 HOH A 250 750 253 HOH HOH . C 3 HOH A 251 751 249 HOH HOH . C 3 HOH A 252 752 259 HOH HOH . C 3 HOH A 253 753 245 HOH HOH . C 3 HOH A 254 754 226 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CPR . . . B 2 107.894 77.353 9.834 1 22.77 ? P CPR 401 A 1 HETATM 2 O O1P CPR . . . B 2 106.603 77.888 9.295 1 22.4 ? O1P CPR 401 A 1 HETATM 3 O O2P CPR . . . B 2 108.128 77.97 11.2 1 29.09 ? O2P CPR 401 A 1 HETATM 4 O O3P CPR . . . B 2 107.861 75.817 9.891 1 28.53 ? O3P CPR 401 A 1 HETATM 5 O O5' CPR . . . B 2 109.068 77.821 8.919 1 21.21 ? O5' CPR 401 A 1 HETATM 6 C C5' CPR . . . B 2 110.432 77.533 9.288 1 20.52 ? C5' CPR 401 A 1 HETATM 7 C C4' CPR . . . B 2 111.28 77.369 7.98 1 23.42 ? C4' CPR 401 A 1 HETATM 8 O O4' CPR . . . B 2 110.973 78.605 7.031 1 26.34 ? O4' CPR 401 A 1 HETATM 9 C C3' CPR . . . B 2 112.617 77.339 8.17 1 20.45 ? C3' CPR 401 A 1 HETATM 10 O O3' CPR . . . B 2 113.136 76.083 7.731 1 21.66 ? O3' CPR 401 A 1 HETATM 11 C C2' CPR . . . B 2 113.233 78.467 7.369 1 25.13 ? C2' CPR 401 A 1 HETATM 12 O O2' CPR . . . B 2 114.306 78.108 6.519 1 24.34 ? O2' CPR 401 A 1 HETATM 13 C C1' CPR . . . B 2 112.076 79.019 6.501 1 24.99 ? C1' CPR 401 A 1 HETATM 14 N N9 CPR . . . B 2 112.004 80.468 6.702 1 26.4 ? N9 CPR 401 A 1 HETATM 15 C C8 CPR . . . B 2 112.018 81.473 5.77 1 27.56 ? C8 CPR 401 A 1 HETATM 16 N N7 CPR . . . B 2 111.922 82.649 6.418 1 30.05 ? N7 CPR 401 A 1 HETATM 17 C C5 CPR . . . B 2 111.855 82.37 7.779 1 30.46 ? C5 CPR 401 A 1 HETATM 18 C C6 CPR . . . B 2 111.743 83.074 8.992 1 32.94 ? C6 CPR 401 A 1 HETATM 19 N N1 CPR . . . B 2 111.695 82.495 10.244 1 34.65 ? N1 CPR 401 A 1 HETATM 20 C C2 CPR . . . B 2 111.748 81.173 10.333 1 34.11 ? C2 CPR 401 A 1 HETATM 21 N N3 CPR . . . B 2 111.847 80.422 9.241 1 30.59 ? N3 CPR 401 A 1 HETATM 22 C C4 CPR . . . B 2 111.906 80.977 7.961 1 31.14 ? C4 CPR 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 22 #