data_6MKF # _model_server_result.job_id C-ORDZ8qQSUi2Gm-fQrcfA _model_server_result.datetime_utc '2024-11-29 12:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mkf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6MKF # _exptl.entry_id 6MKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.362 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6MKF _cell.length_a 192.933 _cell.length_b 192.933 _cell.length_c 155.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 387 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 422 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C7 _struct_conn.ptnr2_label_comp_id IM2 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id IM2 _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.595 _struct_conn.pdbx_value_order sing # _chem_comp.formula 'C12 H19 N3 O4 S' _chem_comp.formula_weight 301.362 _chem_comp.id IM2 _chem_comp.mon_nstd_flag . _chem_comp.name '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'IMIPENEM, open form;N-FORMIMIDOYL-THIENAMYCINE, open form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 IM2 sing 160 n n C7 O7 IM2 doub 161 n n C7 H71 IM2 sing 162 n n C2 C3 IM2 doub 163 n n C2 S21 IM2 sing 164 n n C2 C1 IM2 sing 165 n n C6 C5 IM2 sing 166 n n C6 C61 IM2 sing 167 n n C6 H61A IM2 sing 168 n n C5 N4 IM2 sing 169 n n C5 C1 IM2 sing 170 n n C5 H51 IM2 sing 171 n n C3 N4 IM2 sing 172 n n C3 C31 IM2 sing 173 n n C61 O62 IM2 sing 174 n n C61 C62 IM2 sing 175 n n C61 H61 IM2 sing 176 n n O62 HO6 IM2 sing 177 n n C62 H621 IM2 sing 178 n n C62 H622 IM2 sing 179 n n C62 H623 IM2 sing 180 n n N4 H41 IM2 sing 181 n n C31 O31 IM2 doub 182 n n C31 O32 IM2 sing 183 n n O32 H321 IM2 sing 184 n n S21 C22 IM2 sing 185 n n C22 C23 IM2 sing 186 n n C22 H221 IM2 sing 187 n n C22 H222 IM2 sing 188 n n C23 N24 IM2 sing 189 n n C23 H231 IM2 sing 190 n n C23 H232 IM2 sing 191 n n N24 C25 IM2 sing 192 n n N24 H241 IM2 sing 193 n n C25 N26 IM2 doub 194 n n C25 H25 IM2 sing 195 n n N26 H26 IM2 sing 196 n n C1 H11 IM2 sing 197 n n C1 H12 IM2 sing 198 n n # _atom_sites.entry_id 6MKF _atom_sites.fract_transf_matrix[1][1] 0.005183 _atom_sites.fract_transf_matrix[1][2] 0.002992 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IM2 A 1 701 1 IM2 IM2 . C 3 SO4 A 1 702 1 SO4 SO4 . D 3 SO4 A 1 703 2 SO4 SO4 . E 3 SO4 A 1 704 3 SO4 SO4 . F 3 SO4 A 1 705 4 SO4 SO4 . G 3 SO4 A 1 706 5 SO4 SO4 . H 3 SO4 A 1 707 6 SO4 SO4 . I 3 SO4 A 1 708 7 SO4 SO4 . J 3 SO4 A 1 709 8 SO4 SO4 . K 3 SO4 A 1 710 9 SO4 SO4 . L 3 SO4 A 1 711 10 SO4 SO4 . M 3 SO4 A 1 712 11 SO4 SO4 . N 3 SO4 A 1 713 12 SO4 SO4 . O 3 SO4 A 1 714 13 SO4 SO4 . P 3 SO4 A 1 715 14 SO4 SO4 . Q 3 SO4 A 1 716 15 SO4 SO4 . R 4 HOH A 1 801 154 HOH HOH . R 4 HOH A 2 802 110 HOH HOH . R 4 HOH A 3 803 171 HOH HOH . R 4 HOH A 4 804 130 HOH HOH . R 4 HOH A 5 805 122 HOH HOH . R 4 HOH A 6 806 45 HOH HOH . R 4 HOH A 7 807 165 HOH HOH . R 4 HOH A 8 808 184 HOH HOH . R 4 HOH A 9 809 34 HOH HOH . R 4 HOH A 10 810 177 HOH HOH . R 4 HOH A 11 811 132 HOH HOH . R 4 HOH A 12 812 170 HOH HOH . R 4 HOH A 13 813 120 HOH HOH . R 4 HOH A 14 814 112 HOH HOH . R 4 HOH A 15 815 11 HOH HOH . R 4 HOH A 16 816 162 HOH HOH . R 4 HOH A 17 817 169 HOH HOH . R 4 HOH A 18 818 33 HOH HOH . R 4 HOH A 19 819 107 HOH HOH . R 4 HOH A 20 820 38 HOH HOH . R 4 HOH A 21 821 128 HOH HOH . R 4 HOH A 22 822 49 HOH HOH . R 4 HOH A 23 823 158 HOH HOH . R 4 HOH A 24 824 42 HOH HOH . R 4 HOH A 25 825 106 HOH HOH . R 4 HOH A 26 826 8 HOH HOH . R 4 HOH A 27 827 75 HOH HOH . R 4 HOH A 28 828 37 HOH HOH . R 4 HOH A 29 829 67 HOH HOH . R 4 HOH A 30 830 1 HOH HOH . R 4 HOH A 31 831 96 HOH HOH . R 4 HOH A 32 832 18 HOH HOH . R 4 HOH A 33 833 10 HOH HOH . R 4 HOH A 34 834 104 HOH HOH . R 4 HOH A 35 835 148 HOH HOH . R 4 HOH A 36 836 52 HOH HOH . R 4 HOH A 37 837 93 HOH HOH . R 4 HOH A 38 838 58 HOH HOH . R 4 HOH A 39 839 25 HOH HOH . R 4 HOH A 40 840 84 HOH HOH . R 4 HOH A 41 841 155 HOH HOH . R 4 HOH A 42 842 156 HOH HOH . R 4 HOH A 43 843 35 HOH HOH . R 4 HOH A 44 844 7 HOH HOH . R 4 HOH A 45 845 179 HOH HOH . R 4 HOH A 46 846 161 HOH HOH . R 4 HOH A 47 847 83 HOH HOH . R 4 HOH A 48 848 44 HOH HOH . R 4 HOH A 49 849 125 HOH HOH . R 4 HOH A 50 850 65 HOH HOH . R 4 HOH A 51 851 53 HOH HOH . R 4 HOH A 52 852 41 HOH HOH . R 4 HOH A 53 853 180 HOH HOH . R 4 HOH A 54 854 2 HOH HOH . R 4 HOH A 55 855 137 HOH HOH . R 4 HOH A 56 856 43 HOH HOH . R 4 HOH A 57 857 116 HOH HOH . R 4 HOH A 58 858 139 HOH HOH . R 4 HOH A 59 859 143 HOH HOH . R 4 HOH A 60 860 80 HOH HOH . R 4 HOH A 61 861 105 HOH HOH . R 4 HOH A 62 862 157 HOH HOH . R 4 HOH A 63 863 30 HOH HOH . R 4 HOH A 64 864 3 HOH HOH . R 4 HOH A 65 865 4 HOH HOH . R 4 HOH A 66 866 51 HOH HOH . R 4 HOH A 67 867 98 HOH HOH . R 4 HOH A 68 868 92 HOH HOH . R 4 HOH A 69 869 5 HOH HOH . R 4 HOH A 70 870 147 HOH HOH . R 4 HOH A 71 871 124 HOH HOH . R 4 HOH A 72 872 166 HOH HOH . R 4 HOH A 73 873 54 HOH HOH . R 4 HOH A 74 874 17 HOH HOH . R 4 HOH A 75 875 85 HOH HOH . R 4 HOH A 76 876 15 HOH HOH . R 4 HOH A 77 877 47 HOH HOH . R 4 HOH A 78 878 14 HOH HOH . R 4 HOH A 79 879 142 HOH HOH . R 4 HOH A 80 880 21 HOH HOH . R 4 HOH A 81 881 87 HOH HOH . R 4 HOH A 82 882 31 HOH HOH . R 4 HOH A 83 883 22 HOH HOH . R 4 HOH A 84 884 94 HOH HOH . R 4 HOH A 85 885 89 HOH HOH . R 4 HOH A 86 886 81 HOH HOH . R 4 HOH A 87 887 119 HOH HOH . R 4 HOH A 88 888 26 HOH HOH . R 4 HOH A 89 889 183 HOH HOH . R 4 HOH A 90 890 46 HOH HOH . R 4 HOH A 91 891 121 HOH HOH . R 4 HOH A 92 892 159 HOH HOH . R 4 HOH A 93 893 144 HOH HOH . R 4 HOH A 94 894 182 HOH HOH . R 4 HOH A 95 895 39 HOH HOH . R 4 HOH A 96 896 164 HOH HOH . R 4 HOH A 97 897 167 HOH HOH . R 4 HOH A 98 898 77 HOH HOH . R 4 HOH A 99 899 108 HOH HOH . R 4 HOH A 100 900 9 HOH HOH . R 4 HOH A 101 901 69 HOH HOH . R 4 HOH A 102 902 123 HOH HOH . R 4 HOH A 103 903 6 HOH HOH . R 4 HOH A 104 904 71 HOH HOH . R 4 HOH A 105 905 95 HOH HOH . R 4 HOH A 106 906 101 HOH HOH . R 4 HOH A 107 907 13 HOH HOH . R 4 HOH A 108 908 160 HOH HOH . R 4 HOH A 109 909 172 HOH HOH . R 4 HOH A 110 910 97 HOH HOH . R 4 HOH A 111 911 19 HOH HOH . R 4 HOH A 112 912 113 HOH HOH . R 4 HOH A 113 913 152 HOH HOH . R 4 HOH A 114 914 12 HOH HOH . R 4 HOH A 115 915 174 HOH HOH . R 4 HOH A 116 916 16 HOH HOH . R 4 HOH A 117 917 20 HOH HOH . R 4 HOH A 118 918 151 HOH HOH . R 4 HOH A 119 919 141 HOH HOH . R 4 HOH A 120 920 23 HOH HOH . R 4 HOH A 121 921 74 HOH HOH . R 4 HOH A 122 922 115 HOH HOH . R 4 HOH A 123 923 27 HOH HOH . R 4 HOH A 124 924 181 HOH HOH . R 4 HOH A 125 925 24 HOH HOH . R 4 HOH A 126 926 99 HOH HOH . R 4 HOH A 127 927 102 HOH HOH . R 4 HOH A 128 928 129 HOH HOH . R 4 HOH A 129 929 28 HOH HOH . R 4 HOH A 130 930 114 HOH HOH . R 4 HOH A 131 931 178 HOH HOH . R 4 HOH A 132 932 175 HOH HOH . R 4 HOH A 133 933 56 HOH HOH . R 4 HOH A 134 934 149 HOH HOH . R 4 HOH A 135 935 140 HOH HOH . R 4 HOH A 136 936 145 HOH HOH . R 4 HOH A 137 937 73 HOH HOH . R 4 HOH A 138 938 150 HOH HOH . R 4 HOH A 139 939 50 HOH HOH . R 4 HOH A 140 940 153 HOH HOH . R 4 HOH A 141 941 168 HOH HOH . R 4 HOH A 142 942 135 HOH HOH . R 4 HOH A 143 943 72 HOH HOH . R 4 HOH A 144 944 90 HOH HOH . R 4 HOH A 145 945 127 HOH HOH . R 4 HOH A 146 946 109 HOH HOH . R 4 HOH A 147 947 60 HOH HOH . R 4 HOH A 148 948 57 HOH HOH . R 4 HOH A 149 949 146 HOH HOH . R 4 HOH A 150 950 29 HOH HOH . R 4 HOH A 151 951 55 HOH HOH . R 4 HOH A 152 952 126 HOH HOH . R 4 HOH A 153 953 48 HOH HOH . R 4 HOH A 154 954 176 HOH HOH . R 4 HOH A 155 955 103 HOH HOH . R 4 HOH A 156 956 100 HOH HOH . R 4 HOH A 157 957 163 HOH HOH . R 4 HOH A 158 958 118 HOH HOH . R 4 HOH A 159 959 88 HOH HOH . R 4 HOH A 160 960 173 HOH HOH . R 4 HOH A 161 961 111 HOH HOH . R 4 HOH A 162 962 78 HOH HOH . R 4 HOH A 163 963 138 HOH HOH . R 4 HOH A 164 964 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 IM2 . . . B 2 10.17 -87.716 -47.23 0.81 72.64 ? C7 IM2 701 A 1 HETATM 2 C C2 IM2 . . . B 2 6.225 -86.948 -45.73 0.81 81.56 ? C2 IM2 701 A 1 HETATM 3 C C6 IM2 . . . B 2 8.89 -88.343 -46.569 0.81 84.01 ? C6 IM2 701 A 1 HETATM 4 C C5 IM2 . . . B 2 7.761 -87.793 -47.229 0.81 74.47 ? C5 IM2 701 A 1 HETATM 5 C C3 IM2 . . . B 2 6.848 -85.784 -46.457 0.81 78.12 ? C3 IM2 701 A 1 HETATM 6 O O7 IM2 . . . B 2 10.032 -87.017 -48.177 0.81 71.47 ? O7 IM2 701 A 1 HETATM 7 C C61 IM2 . . . B 2 8.93 -89.902 -46.72 0.81 73.46 ? C61 IM2 701 A 1 HETATM 8 O O62 IM2 . . . B 2 8.248 -90.519 -45.68 0.81 106 ? O62 IM2 701 A 1 HETATM 9 C C62 IM2 . . . B 2 10.368 -90.38 -46.704 0.81 64 ? C62 IM2 701 A 1 HETATM 10 N N4 IM2 . . . B 2 7.851 -86.22 -47.221 0.81 70.5 ? N4 IM2 701 A 1 HETATM 11 C C31 IM2 . . . B 2 6.911 -84.413 -45.783 0.81 77.65 ? C31 IM2 701 A 1 HETATM 12 O O31 IM2 . . . B 2 6.864 -83.365 -46.477 0.81 76.44 ? O31 IM2 701 A 1 HETATM 13 O O32 IM2 . . . B 2 7.005 -84.327 -44.531 0.81 81.85 ? O32 IM2 701 A 1 HETATM 14 S S21 IM2 . . . B 2 4.728 -86.751 -44.725 0.81 115.46 ? S21 IM2 701 A 1 HETATM 15 C C22 IM2 . . . B 2 4.689 -88.087 -43.493 0.81 114.83 ? C22 IM2 701 A 1 HETATM 16 C C23 IM2 . . . B 2 3.922 -89.278 -44.061 0.81 116.05 ? C23 IM2 701 A 1 HETATM 17 N N24 IM2 . . . B 2 3.97 -90.394 -43.133 0.81 119.81 ? N24 IM2 701 A 1 HETATM 18 C C25 IM2 . . . B 2 5.003 -91.405 -43.26 0.81 119.33 ? C25 IM2 701 A 1 HETATM 19 N N26 IM2 . . . B 2 5.858 -91.319 -44.169 0.81 108.66 ? N26 IM2 701 A 1 HETATM 20 C C1 IM2 . . . B 2 6.443 -88.104 -46.441 0.81 78.36 ? C1 IM2 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #