data_6MKH
#
_model_server_result.job_id            jQ6Dbun7sZWYQJC5Okrowg 
_model_server_result.datetime_utc      '2024-11-29 13:10:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mkh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":701}' 
#
_entry.id    6MKH 
#
_exptl.entry_id    6MKH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              301.362 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.3 
_cell.angle_gamma         90 
_cell.entry_id            6MKH 
_cell.length_a            123.842 
_cell.length_b            85.401 
_cell.length_c            84.572 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MKH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             392 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              424 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C7 
_struct_conn.ptnr2_label_comp_id            IM2 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             IM2 
_struct_conn.ptnr2_auth_seq_id              701 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.373 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C12 H19 N3 O4 S' 
_chem_comp.formula_weight    301.362 
_chem_comp.id                IM2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox ylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'IMIPENEM, open form;N-FORMIMIDOYL-THIENAMYCINE, open form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 C6 IM2 sing 160 n n 
C7 O7 IM2 doub 161 n n 
C7 H71 IM2 sing 162 n n 
C2 C3 IM2 doub 163 n n 
C2 S21 IM2 sing 164 n n 
C2 C1 IM2 sing 165 n n 
C6 C5 IM2 sing 166 n n 
C6 C61 IM2 sing 167 n n 
C6 H61A IM2 sing 168 n n 
C5 N4 IM2 sing 169 n n 
C5 C1 IM2 sing 170 n n 
C5 H51 IM2 sing 171 n n 
C3 N4 IM2 sing 172 n n 
C3 C31 IM2 sing 173 n n 
C61 O62 IM2 sing 174 n n 
C61 C62 IM2 sing 175 n n 
C61 H61 IM2 sing 176 n n 
O62 HO6 IM2 sing 177 n n 
C62 H621 IM2 sing 178 n n 
C62 H622 IM2 sing 179 n n 
C62 H623 IM2 sing 180 n n 
N4 H41 IM2 sing 181 n n 
C31 O31 IM2 doub 182 n n 
C31 O32 IM2 sing 183 n n 
O32 H321 IM2 sing 184 n n 
S21 C22 IM2 sing 185 n n 
C22 C23 IM2 sing 186 n n 
C22 H221 IM2 sing 187 n n 
C22 H222 IM2 sing 188 n n 
C23 N24 IM2 sing 189 n n 
C23 H231 IM2 sing 190 n n 
C23 H232 IM2 sing 191 n n 
N24 C25 IM2 sing 192 n n 
N24 H241 IM2 sing 193 n n 
C25 N26 IM2 doub 194 n n 
C25 H25 IM2 sing 195 n n 
N26 H26 IM2 sing 196 n n 
C1 H11 IM2 sing 197 n n 
C1 H12 IM2 sing 198 n n 
#
_atom_sites.entry_id                     6MKH 
_atom_sites.fract_transf_matrix[1][1]    0.008075 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002986 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012607 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IM2 A 1 701 1 IM2 IM2 . 
C 3 PO4 A 1 702 1 PO4 PO4 . 
D 3 PO4 A 1 703 2 PO4 PO4 . 
E 4 HOH A 1 801 18 HOH HOH . 
E 4 HOH A 2 802 60 HOH HOH . 
E 4 HOH A 3 803 22 HOH HOH . 
E 4 HOH A 4 804 51 HOH HOH . 
E 4 HOH A 5 805 24 HOH HOH . 
E 4 HOH A 6 806 55 HOH HOH . 
E 4 HOH A 7 807 1 HOH HOH . 
E 4 HOH A 8 808 20 HOH HOH . 
E 4 HOH A 9 809 4 HOH HOH . 
E 4 HOH A 10 810 23 HOH HOH . 
E 4 HOH A 11 811 8 HOH HOH . 
E 4 HOH A 12 812 52 HOH HOH . 
E 4 HOH A 13 813 10 HOH HOH . 
E 4 HOH A 14 814 61 HOH HOH . 
E 4 HOH A 15 815 57 HOH HOH . 
E 4 HOH A 16 816 17 HOH HOH . 
E 4 HOH A 17 817 46 HOH HOH . 
E 4 HOH A 18 818 9 HOH HOH . 
E 4 HOH A 19 819 28 HOH HOH . 
E 4 HOH A 20 820 7 HOH HOH . 
E 4 HOH A 21 821 72 HOH HOH . 
E 4 HOH A 22 822 50 HOH HOH . 
E 4 HOH A 23 823 42 HOH HOH . 
E 4 HOH A 24 824 56 HOH HOH . 
E 4 HOH A 25 825 13 HOH HOH . 
E 4 HOH A 26 826 30 HOH HOH . 
E 4 HOH A 27 827 49 HOH HOH . 
E 4 HOH A 28 828 5 HOH HOH . 
E 4 HOH A 29 829 6 HOH HOH . 
E 4 HOH A 30 830 43 HOH HOH . 
E 4 HOH A 31 831 47 HOH HOH . 
E 4 HOH A 32 832 45 HOH HOH . 
E 4 HOH A 33 833 41 HOH HOH . 
E 4 HOH A 34 834 19 HOH HOH . 
E 4 HOH A 35 835 15 HOH HOH . 
E 4 HOH A 36 836 40 HOH HOH . 
E 4 HOH A 37 837 16 HOH HOH . 
E 4 HOH A 38 838 39 HOH HOH . 
E 4 HOH A 39 839 26 HOH HOH . 
E 4 HOH A 40 840 44 HOH HOH . 
E 4 HOH A 41 841 29 HOH HOH . 
E 4 HOH A 42 842 2 HOH HOH . 
E 4 HOH A 43 843 21 HOH HOH . 
E 4 HOH A 44 844 12 HOH HOH . 
E 4 HOH A 45 845 59 HOH HOH . 
E 4 HOH A 46 846 3 HOH HOH . 
E 4 HOH A 47 847 33 HOH HOH . 
E 4 HOH A 48 848 25 HOH HOH . 
E 4 HOH A 49 849 11 HOH HOH . 
E 4 HOH A 50 850 34 HOH HOH . 
E 4 HOH A 51 851 71 HOH HOH . 
E 4 HOH A 52 852 85 HOH HOH . 
E 4 HOH A 53 853 78 HOH HOH . 
E 4 HOH A 54 854 53 HOH HOH . 
E 4 HOH A 55 855 79 HOH HOH . 
E 4 HOH A 56 856 58 HOH HOH . 
E 4 HOH A 57 857 69 HOH HOH . 
E 4 HOH A 58 858 66 HOH HOH . 
E 4 HOH A 59 859 70 HOH HOH . 
E 4 HOH A 60 860 77 HOH HOH . 
E 4 HOH A 61 861 35 HOH HOH . 
E 4 HOH A 62 862 82 HOH HOH . 
E 4 HOH A 63 863 54 HOH HOH . 
E 4 HOH A 64 864 48 HOH HOH . 
E 4 HOH A 65 865 73 HOH HOH . 
E 4 HOH A 66 866 36 HOH HOH . 
E 4 HOH A 67 867 63 HOH HOH . 
E 4 HOH A 68 868 65 HOH HOH . 
E 4 HOH A 69 869 68 HOH HOH . 
E 4 HOH A 70 870 74 HOH HOH . 
E 4 HOH A 71 871 80 HOH HOH . 
E 4 HOH A 72 872 76 HOH HOH . 
E 4 HOH A 73 873 31 HOH HOH . 
E 4 HOH A 74 874 81 HOH HOH . 
E 4 HOH A 75 875 27 HOH HOH . 
E 4 HOH A 76 876 83 HOH HOH . 
E 4 HOH A 77 877 67 HOH HOH . 
E 4 HOH A 78 878 84 HOH HOH . 
E 4 HOH A 79 879 37 HOH HOH . 
E 4 HOH A 80 880 75 HOH HOH . 
E 4 HOH A 81 881 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 IM2 . . . B 2 39.517 1.415 8.647 0.95 67.87 ? C7 IM2 701 A 1 
HETATM 2 C C2 IM2 . . . B 2 35.42 1.799 9.751 0.95 96.11 ? C2 IM2 701 A 1 
HETATM 3 C C6 IM2 . . . B 2 38.547 1.157 9.86 0.95 76.19 ? C6 IM2 701 A 1 
HETATM 4 C C5 IM2 . . . B 2 37.351 0.558 9.373 0.95 69.41 ? C5 IM2 701 A 1 
HETATM 5 C C3 IM2 . . . B 2 35.71 1.831 8.27 0.95 92.14 ? C3 IM2 701 A 1 
HETATM 6 O O7 IM2 . . . B 2 39.613 0.631 7.76 0.95 70.16 ? O7 IM2 701 A 1 
HETATM 7 C C61 IM2 . . . B 2 39.262 0.282 10.952 0.95 71.7 ? C61 IM2 701 A 1 
HETATM 8 O O62 IM2 . . . B 2 38.822 0.628 12.222 0.95 76.87 ? O62 IM2 701 A 1 
HETATM 9 C C62 IM2 . . . B 2 40.763 0.491 10.907 0.95 70.32 ? C62 IM2 701 A 1 
HETATM 10 N N4 IM2 . . . B 2 36.897 1.261 8.031 0.95 71.46 ? N4 IM2 701 A 1 
HETATM 11 C C31 IM2 . . . B 2 35.155 2.973 7.405 0.95 90.94 ? C31 IM2 701 A 1 
HETATM 12 O O31 IM2 . . . B 2 34.556 2.719 6.324 0.95 90.85 ? O31 IM2 701 A 1 
HETATM 13 O O32 IM2 . . . B 2 35.275 4.174 7.771 0.95 84.22 ? O32 IM2 701 A 1 
HETATM 14 S S21 IM2 . . . B 2 33.789 2.283 10.388 0.95 120.68 ? S21 IM2 701 A 1 
HETATM 15 C C22 IM2 . . . B 2 33.164 1.007 11.522 0.95 117.8 ? C22 IM2 701 A 1 
HETATM 16 C C23 IM2 . . . B 2 32.432 1.671 12.688 0.95 128.68 ? C23 IM2 701 A 1 
HETATM 17 N N24 IM2 . . . B 2 31.493 2.661 12.186 0.95 125.26 ? N24 IM2 701 A 1 
HETATM 18 C C25 IM2 . . . B 2 30.208 2.236 11.658 0.95 120.98 ? C25 IM2 701 A 1 
HETATM 19 N N26 IM2 . . . B 2 29.393 3.082 11.225 0.95 109.9 ? N26 IM2 701 A 1 
HETATM 20 C C1 IM2 . . . B 2 36.168 0.819 10.372 0.95 92.95 ? C1 IM2 701 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#