data_6MKI # _model_server_result.job_id irTV9EtX6w2GzGSNMZMzNQ _model_server_result.datetime_utc '2024-10-11 01:23:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":704}' # _entry.id 6MKI # _exptl.entry_id 6MKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.93 _cell.angle_gamma 90 _cell.entry_id 6MKI _cell.length_a 123.496 _cell.length_b 85.572 _cell.length_c 82.715 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 392 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 424 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C6 _struct_conn.ptnr2_label_comp_id AI8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AI8 _struct_conn.ptnr2_auth_seq_id 701 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.106 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 181 n n C1 C2 GOL sing 182 n n C1 H11 GOL sing 183 n n C1 H12 GOL sing 184 n n O1 HO1 GOL sing 185 n n C2 O2 GOL sing 186 n n C2 C3 GOL sing 187 n n C2 H2 GOL sing 188 n n O2 HO2 GOL sing 189 n n C3 O3 GOL sing 190 n n C3 H31 GOL sing 191 n n C3 H32 GOL sing 192 n n O3 HO3 GOL sing 193 n n # _atom_sites.entry_id 6MKI _atom_sites.fract_transf_matrix[1][1] 0.008097 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002937 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AI8 A 1 701 1 AI8 AI8 . C 3 PO4 A 1 702 1 PO4 PO4 . D 3 PO4 A 1 703 2 PO4 PO4 . E 4 GOL A 1 704 1 GOL GOL . F 5 HOH A 1 801 25 HOH HOH . F 5 HOH A 2 802 26 HOH HOH . F 5 HOH A 3 803 22 HOH HOH . F 5 HOH A 4 804 6 HOH HOH . F 5 HOH A 5 805 7 HOH HOH . F 5 HOH A 6 806 20 HOH HOH . F 5 HOH A 7 807 16 HOH HOH . F 5 HOH A 8 808 4 HOH HOH . F 5 HOH A 9 809 13 HOH HOH . F 5 HOH A 10 810 1 HOH HOH . F 5 HOH A 11 811 19 HOH HOH . F 5 HOH A 12 812 18 HOH HOH . F 5 HOH A 13 813 12 HOH HOH . F 5 HOH A 14 814 11 HOH HOH . F 5 HOH A 15 815 14 HOH HOH . F 5 HOH A 16 816 10 HOH HOH . F 5 HOH A 17 817 21 HOH HOH . F 5 HOH A 18 818 24 HOH HOH . F 5 HOH A 19 819 17 HOH HOH . F 5 HOH A 20 820 5 HOH HOH . F 5 HOH A 21 821 9 HOH HOH . F 5 HOH A 22 822 23 HOH HOH . F 5 HOH A 23 823 8 HOH HOH . F 5 HOH A 24 824 15 HOH HOH . F 5 HOH A 25 825 3 HOH HOH . F 5 HOH A 26 826 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 19.897 1.229 -1.915 0.96 52.38 ? C1 GOL 704 A 1 HETATM 2 O O1 GOL . . . E 4 18.74 0.87 -1.219 0.96 48.1 ? O1 GOL 704 A 1 HETATM 3 C C2 GOL . . . E 4 21.03 1.443 -0.87 0.96 64.14 ? C2 GOL 704 A 1 HETATM 4 O O2 GOL . . . E 4 20.556 2.008 0.307 0.96 61.68 ? O2 GOL 704 A 1 HETATM 5 C C3 GOL . . . E 4 21.674 0.036 -0.662 0.96 59.68 ? C3 GOL 704 A 1 HETATM 6 O O3 GOL . . . E 4 22.638 0.148 0.348 0.96 56.15 ? O3 GOL 704 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #