data_6MKM # _model_server_result.job_id MwofxoQwB2RnVQVla3UXIw _model_server_result.datetime_utc '2024-10-19 10:30:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6MKM # _exptl.entry_id 6MKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MKM _cell.length_a 46.552 _cell.length_b 136.601 _cell.length_c 45.084 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 352 n n C C2 TRS sing 353 n n C C3 TRS sing 354 n n C N TRS sing 355 n n C1 O1 TRS sing 356 n n C1 H11 TRS sing 357 n n C1 H12 TRS sing 358 n n C2 O2 TRS sing 359 n n C2 H21 TRS sing 360 n n C2 H22 TRS sing 361 n n C3 O3 TRS sing 362 n n C3 H31 TRS sing 363 n n C3 H32 TRS sing 364 n n N HN1 TRS sing 365 n n N HN2 TRS sing 366 n n N HN3 TRS sing 367 n n O1 HO1 TRS sing 368 n n O2 HO2 TRS sing 369 n n O3 HO3 TRS sing 370 n n # _atom_sites.entry_id 6MKM _atom_sites.fract_transf_matrix[1][1] 0.021481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 401 1 TRS TRS . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 4 EDO A 1 404 1 EDO EDO . F 4 EDO A 1 405 3 EDO EDO . G 5 HOH A 1 501 191 HOH HOH . G 5 HOH A 2 502 59 HOH HOH . G 5 HOH A 3 503 317 HOH HOH . G 5 HOH A 4 504 307 HOH HOH . G 5 HOH A 5 505 39 HOH HOH . G 5 HOH A 6 506 33 HOH HOH . G 5 HOH A 7 507 1 HOH HOH . G 5 HOH A 8 508 201 HOH HOH . G 5 HOH A 9 509 24 HOH HOH . G 5 HOH A 10 510 52 HOH HOH . G 5 HOH A 11 511 8 HOH HOH . G 5 HOH A 12 512 58 HOH HOH . G 5 HOH A 13 513 55 HOH HOH . G 5 HOH A 14 514 306 HOH HOH . G 5 HOH A 15 515 79 HOH HOH . G 5 HOH A 16 516 302 HOH HOH . G 5 HOH A 17 517 2 HOH HOH . G 5 HOH A 18 518 103 HOH HOH . G 5 HOH A 19 519 14 HOH HOH . G 5 HOH A 20 520 202 HOH HOH . G 5 HOH A 21 521 312 HOH HOH . G 5 HOH A 22 522 73 HOH HOH . G 5 HOH A 23 523 89 HOH HOH . G 5 HOH A 24 524 32 HOH HOH . G 5 HOH A 25 525 78 HOH HOH . G 5 HOH A 26 526 22 HOH HOH . G 5 HOH A 27 527 158 HOH HOH . G 5 HOH A 28 528 131 HOH HOH . G 5 HOH A 29 529 135 HOH HOH . G 5 HOH A 30 530 170 HOH HOH . G 5 HOH A 31 531 171 HOH HOH . G 5 HOH A 32 532 41 HOH HOH . G 5 HOH A 33 533 153 HOH HOH . G 5 HOH A 34 534 111 HOH HOH . G 5 HOH A 35 535 18 HOH HOH . G 5 HOH A 36 536 38 HOH HOH . G 5 HOH A 37 537 61 HOH HOH . G 5 HOH A 38 538 308 HOH HOH . G 5 HOH A 39 539 290 HOH HOH . G 5 HOH A 40 540 50 HOH HOH . G 5 HOH A 41 541 94 HOH HOH . G 5 HOH A 42 542 198 HOH HOH . G 5 HOH A 43 543 28 HOH HOH . G 5 HOH A 44 544 76 HOH HOH . G 5 HOH A 45 545 63 HOH HOH . G 5 HOH A 46 546 26 HOH HOH . G 5 HOH A 47 547 51 HOH HOH . G 5 HOH A 48 548 42 HOH HOH . G 5 HOH A 49 549 72 HOH HOH . G 5 HOH A 50 550 101 HOH HOH . G 5 HOH A 51 551 34 HOH HOH . G 5 HOH A 52 552 30 HOH HOH . G 5 HOH A 53 553 43 HOH HOH . G 5 HOH A 54 554 141 HOH HOH . G 5 HOH A 55 555 47 HOH HOH . G 5 HOH A 56 556 70 HOH HOH . G 5 HOH A 57 557 121 HOH HOH . G 5 HOH A 58 558 67 HOH HOH . G 5 HOH A 59 559 264 HOH HOH . G 5 HOH A 60 560 82 HOH HOH . G 5 HOH A 61 561 315 HOH HOH . G 5 HOH A 62 562 123 HOH HOH . G 5 HOH A 63 563 11 HOH HOH . G 5 HOH A 64 564 23 HOH HOH . G 5 HOH A 65 565 20 HOH HOH . G 5 HOH A 66 566 53 HOH HOH . G 5 HOH A 67 567 114 HOH HOH . G 5 HOH A 68 568 98 HOH HOH . G 5 HOH A 69 569 90 HOH HOH . G 5 HOH A 70 570 48 HOH HOH . G 5 HOH A 71 571 6 HOH HOH . G 5 HOH A 72 572 157 HOH HOH . G 5 HOH A 73 573 303 HOH HOH . G 5 HOH A 74 574 96 HOH HOH . G 5 HOH A 75 575 168 HOH HOH . G 5 HOH A 76 576 189 HOH HOH . G 5 HOH A 77 577 12 HOH HOH . G 5 HOH A 78 578 5 HOH HOH . G 5 HOH A 79 579 56 HOH HOH . G 5 HOH A 80 580 7 HOH HOH . G 5 HOH A 81 581 113 HOH HOH . G 5 HOH A 82 582 60 HOH HOH . G 5 HOH A 83 583 91 HOH HOH . G 5 HOH A 84 584 27 HOH HOH . G 5 HOH A 85 585 145 HOH HOH . G 5 HOH A 86 586 49 HOH HOH . G 5 HOH A 87 587 105 HOH HOH . G 5 HOH A 88 588 106 HOH HOH . G 5 HOH A 89 589 4 HOH HOH . G 5 HOH A 90 590 77 HOH HOH . G 5 HOH A 91 591 36 HOH HOH . G 5 HOH A 92 592 25 HOH HOH . G 5 HOH A 93 593 85 HOH HOH . G 5 HOH A 94 594 313 HOH HOH . G 5 HOH A 95 595 142 HOH HOH . G 5 HOH A 96 596 310 HOH HOH . G 5 HOH A 97 597 155 HOH HOH . G 5 HOH A 98 598 69 HOH HOH . G 5 HOH A 99 599 126 HOH HOH . G 5 HOH A 100 600 71 HOH HOH . G 5 HOH A 101 601 54 HOH HOH . G 5 HOH A 102 602 31 HOH HOH . G 5 HOH A 103 603 197 HOH HOH . G 5 HOH A 104 604 17 HOH HOH . G 5 HOH A 105 605 196 HOH HOH . G 5 HOH A 106 606 115 HOH HOH . G 5 HOH A 107 607 74 HOH HOH . G 5 HOH A 108 608 110 HOH HOH . G 5 HOH A 109 609 15 HOH HOH . G 5 HOH A 110 610 152 HOH HOH . G 5 HOH A 111 611 37 HOH HOH . G 5 HOH A 112 612 65 HOH HOH . G 5 HOH A 113 613 154 HOH HOH . G 5 HOH A 114 614 21 HOH HOH . G 5 HOH A 115 615 19 HOH HOH . G 5 HOH A 116 616 280 HOH HOH . G 5 HOH A 117 617 223 HOH HOH . G 5 HOH A 118 618 95 HOH HOH . G 5 HOH A 119 619 66 HOH HOH . G 5 HOH A 120 620 16 HOH HOH . G 5 HOH A 121 621 185 HOH HOH . G 5 HOH A 122 622 151 HOH HOH . G 5 HOH A 123 623 150 HOH HOH . G 5 HOH A 124 624 35 HOH HOH . G 5 HOH A 125 625 9 HOH HOH . G 5 HOH A 126 626 128 HOH HOH . G 5 HOH A 127 627 241 HOH HOH . G 5 HOH A 128 628 305 HOH HOH . G 5 HOH A 129 629 10 HOH HOH . G 5 HOH A 130 630 68 HOH HOH . G 5 HOH A 131 631 137 HOH HOH . G 5 HOH A 132 632 44 HOH HOH . G 5 HOH A 133 633 29 HOH HOH . G 5 HOH A 134 634 243 HOH HOH . G 5 HOH A 135 635 304 HOH HOH . G 5 HOH A 136 636 188 HOH HOH . G 5 HOH A 137 637 316 HOH HOH . G 5 HOH A 138 638 86 HOH HOH . G 5 HOH A 139 639 314 HOH HOH . G 5 HOH A 140 640 260 HOH HOH . G 5 HOH A 141 641 81 HOH HOH . G 5 HOH A 142 642 284 HOH HOH . G 5 HOH A 143 643 104 HOH HOH . G 5 HOH A 144 644 311 HOH HOH . G 5 HOH A 145 645 143 HOH HOH . G 5 HOH A 146 646 149 HOH HOH . G 5 HOH A 147 647 221 HOH HOH . G 5 HOH A 148 648 287 HOH HOH . G 5 HOH A 149 649 122 HOH HOH . G 5 HOH A 150 650 208 HOH HOH . G 5 HOH A 151 651 281 HOH HOH . G 5 HOH A 152 652 99 HOH HOH . G 5 HOH A 153 653 293 HOH HOH . G 5 HOH A 154 654 75 HOH HOH . G 5 HOH A 155 655 278 HOH HOH . G 5 HOH A 156 656 235 HOH HOH . G 5 HOH A 157 657 136 HOH HOH . G 5 HOH A 158 658 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 -18.818 23.132 -22.774 1 22.81 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . B 2 -18.864 23.882 -24.106 1 27.77 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . B 2 -18.201 21.747 -22.952 1 23.25 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . B 2 -20.173 23.093 -22.077 1 19.03 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . B 2 -17.959 23.889 -21.853 1 18.57 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . B 2 -17.642 24.556 -24.327 1 25.52 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . B 2 -18.39 20.978 -21.784 1 28.45 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . B 2 -20.744 24.384 -22.084 1 21.78 ? O3 TRS 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #