data_6MKO # _model_server_result.job_id SdHzV6ybHQhdrR8vWqiijg _model_server_result.datetime_utc '2024-11-23 10:35:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6MKO # _exptl.entry_id 6MKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MKO _cell.length_a 46.492 _cell.length_b 137.815 _cell.length_c 45.193 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6MKO _atom_sites.fract_transf_matrix[1][1] 0.021509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 602 GOL GOL . C 2 GOL A 1 402 603 GOL GOL . D 3 HOH A 1 501 150 HOH HOH . D 3 HOH A 2 502 124 HOH HOH . D 3 HOH A 3 503 158 HOH HOH . D 3 HOH A 4 504 156 HOH HOH . D 3 HOH A 5 505 146 HOH HOH . D 3 HOH A 6 506 76 HOH HOH . D 3 HOH A 7 507 100 HOH HOH . D 3 HOH A 8 508 34 HOH HOH . D 3 HOH A 9 509 85 HOH HOH . D 3 HOH A 10 510 170 HOH HOH . D 3 HOH A 11 511 71 HOH HOH . D 3 HOH A 12 512 82 HOH HOH . D 3 HOH A 13 513 45 HOH HOH . D 3 HOH A 14 514 99 HOH HOH . D 3 HOH A 15 515 132 HOH HOH . D 3 HOH A 16 516 91 HOH HOH . D 3 HOH A 17 517 81 HOH HOH . D 3 HOH A 18 518 73 HOH HOH . D 3 HOH A 19 519 5 HOH HOH . D 3 HOH A 20 520 145 HOH HOH . D 3 HOH A 21 521 3 HOH HOH . D 3 HOH A 22 522 56 HOH HOH . D 3 HOH A 23 523 38 HOH HOH . D 3 HOH A 24 524 123 HOH HOH . D 3 HOH A 25 525 87 HOH HOH . D 3 HOH A 26 526 31 HOH HOH . D 3 HOH A 27 527 30 HOH HOH . D 3 HOH A 28 528 103 HOH HOH . D 3 HOH A 29 529 54 HOH HOH . D 3 HOH A 30 530 78 HOH HOH . D 3 HOH A 31 531 47 HOH HOH . D 3 HOH A 32 532 107 HOH HOH . D 3 HOH A 33 533 112 HOH HOH . D 3 HOH A 34 534 33 HOH HOH . D 3 HOH A 35 535 80 HOH HOH . D 3 HOH A 36 536 125 HOH HOH . D 3 HOH A 37 537 108 HOH HOH . D 3 HOH A 38 538 113 HOH HOH . D 3 HOH A 39 539 93 HOH HOH . D 3 HOH A 40 540 26 HOH HOH . D 3 HOH A 41 541 50 HOH HOH . D 3 HOH A 42 542 121 HOH HOH . D 3 HOH A 43 543 59 HOH HOH . D 3 HOH A 44 544 10 HOH HOH . D 3 HOH A 45 545 18 HOH HOH . D 3 HOH A 46 546 157 HOH HOH . D 3 HOH A 47 547 130 HOH HOH . D 3 HOH A 48 548 9 HOH HOH . D 3 HOH A 49 549 111 HOH HOH . D 3 HOH A 50 550 90 HOH HOH . D 3 HOH A 51 551 20 HOH HOH . D 3 HOH A 52 552 29 HOH HOH . D 3 HOH A 53 553 15 HOH HOH . D 3 HOH A 54 554 70 HOH HOH . D 3 HOH A 55 555 17 HOH HOH . D 3 HOH A 56 556 41 HOH HOH . D 3 HOH A 57 557 58 HOH HOH . D 3 HOH A 58 558 173 HOH HOH . D 3 HOH A 59 559 39 HOH HOH . D 3 HOH A 60 560 55 HOH HOH . D 3 HOH A 61 561 62 HOH HOH . D 3 HOH A 62 562 98 HOH HOH . D 3 HOH A 63 563 36 HOH HOH . D 3 HOH A 64 564 63 HOH HOH . D 3 HOH A 65 565 25 HOH HOH . D 3 HOH A 66 566 69 HOH HOH . D 3 HOH A 67 567 79 HOH HOH . D 3 HOH A 68 568 22 HOH HOH . D 3 HOH A 69 569 66 HOH HOH . D 3 HOH A 70 570 2 HOH HOH . D 3 HOH A 71 571 68 HOH HOH . D 3 HOH A 72 572 139 HOH HOH . D 3 HOH A 73 573 109 HOH HOH . D 3 HOH A 74 574 142 HOH HOH . D 3 HOH A 75 575 128 HOH HOH . D 3 HOH A 76 576 52 HOH HOH . D 3 HOH A 77 577 84 HOH HOH . D 3 HOH A 78 578 101 HOH HOH . D 3 HOH A 79 579 67 HOH HOH . D 3 HOH A 80 580 122 HOH HOH . D 3 HOH A 81 581 94 HOH HOH . D 3 HOH A 82 582 32 HOH HOH . D 3 HOH A 83 583 24 HOH HOH . D 3 HOH A 84 584 43 HOH HOH . D 3 HOH A 85 585 61 HOH HOH . D 3 HOH A 86 586 65 HOH HOH . D 3 HOH A 87 587 96 HOH HOH . D 3 HOH A 88 588 77 HOH HOH . D 3 HOH A 89 589 88 HOH HOH . D 3 HOH A 90 590 144 HOH HOH . D 3 HOH A 91 591 49 HOH HOH . D 3 HOH A 92 592 97 HOH HOH . D 3 HOH A 93 593 40 HOH HOH . D 3 HOH A 94 594 16 HOH HOH . D 3 HOH A 95 595 118 HOH HOH . D 3 HOH A 96 596 126 HOH HOH . D 3 HOH A 97 597 28 HOH HOH . D 3 HOH A 98 598 160 HOH HOH . D 3 HOH A 99 599 64 HOH HOH . D 3 HOH A 100 600 104 HOH HOH . D 3 HOH A 101 601 143 HOH HOH . D 3 HOH A 102 602 57 HOH HOH . D 3 HOH A 103 603 44 HOH HOH . D 3 HOH A 104 604 53 HOH HOH . D 3 HOH A 105 605 163 HOH HOH . D 3 HOH A 106 606 19 HOH HOH . D 3 HOH A 107 607 74 HOH HOH . D 3 HOH A 108 608 89 HOH HOH . D 3 HOH A 109 609 75 HOH HOH . D 3 HOH A 110 610 42 HOH HOH . D 3 HOH A 111 611 127 HOH HOH . D 3 HOH A 112 612 11 HOH HOH . D 3 HOH A 113 613 148 HOH HOH . D 3 HOH A 114 614 152 HOH HOH . D 3 HOH A 115 615 172 HOH HOH . D 3 HOH A 116 616 14 HOH HOH . D 3 HOH A 117 617 12 HOH HOH . D 3 HOH A 118 618 105 HOH HOH . D 3 HOH A 119 619 106 HOH HOH . D 3 HOH A 120 620 140 HOH HOH . D 3 HOH A 121 621 110 HOH HOH . D 3 HOH A 122 622 115 HOH HOH . D 3 HOH A 123 623 169 HOH HOH . D 3 HOH A 124 624 27 HOH HOH . D 3 HOH A 125 625 7 HOH HOH . D 3 HOH A 126 626 149 HOH HOH . D 3 HOH A 127 627 92 HOH HOH . D 3 HOH A 128 628 136 HOH HOH . D 3 HOH A 129 629 168 HOH HOH . D 3 HOH A 130 630 147 HOH HOH . D 3 HOH A 131 631 166 HOH HOH . D 3 HOH A 132 632 95 HOH HOH . D 3 HOH A 133 633 151 HOH HOH . D 3 HOH A 134 634 159 HOH HOH . D 3 HOH A 135 635 167 HOH HOH . D 3 HOH A 136 636 171 HOH HOH . D 3 HOH A 137 637 155 HOH HOH . D 3 HOH A 138 638 162 HOH HOH . D 3 HOH A 139 639 48 HOH HOH . D 3 HOH A 140 640 116 HOH HOH . D 3 HOH A 141 641 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 11.856 -2.335 8.822 1 39.47 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . C 2 12.423 -1.054 8.973 1 38.41 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . C 2 11.009 -2.654 10.047 1 43.22 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . C 2 11.758 -2.426 11.22 1 35.25 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . C 2 10.541 -4.102 9.995 1 26.41 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . C 2 10.667 -4.68 11.275 1 37.44 ? O3 GOL 402 A 1 HETATM 7 H H11 GOL . . . C 2 12.645 -3.079 8.713 1 47.37 ? H11 GOL 402 A 1 HETATM 8 H H12 GOL . . . C 2 11.235 -2.362 7.926 1 47.37 ? H12 GOL 402 A 1 HETATM 9 H HO1 GOL . . . C 2 13.021 -0.87 8.218 1 46.09 ? HO1 GOL 402 A 1 HETATM 10 H H2 GOL . . . C 2 10.133 -2.006 10.04 1 51.87 ? H2 GOL 402 A 1 HETATM 11 H HO2 GOL . . . C 2 11.205 -2.623 12.004 1 42.3 ? HO2 GOL 402 A 1 HETATM 12 H H31 GOL . . . C 2 11.142 -4.659 9.277 1 31.69 ? H31 GOL 402 A 1 HETATM 13 H H32 GOL . . . C 2 9.5 -4.142 9.672 1 31.69 ? H32 GOL 402 A 1 HETATM 14 H HO3 GOL . . . C 2 9.886 -5.243 11.458 1 44.93 ? HO3 GOL 402 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #