data_6MKU # _model_server_result.job_id '_bZrxjcFeIH4h_A9pE9g9w' _model_server_result.datetime_utc '2024-11-13 05:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mku # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6MKU # _exptl.entry_id 6MKU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MKU _cell.length_a 37.161 _cell.length_b 58.611 _cell.length_c 115.284 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 38 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 45 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.019 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 19 n n N H ARG sing 20 n n N H2 ARG sing 21 n n CA C ARG sing 22 n n CA CB ARG sing 23 n n CA HA ARG sing 24 n n C O ARG doub 25 n n C OXT ARG sing 26 n n CB CG ARG sing 27 n n CB HB2 ARG sing 28 n n CB HB3 ARG sing 29 n n CG CD ARG sing 30 n n CG HG2 ARG sing 31 n n CG HG3 ARG sing 32 n n CD NE ARG sing 33 n n CD HD2 ARG sing 34 n n CD HD3 ARG sing 35 n n NE CZ ARG sing 36 n n NE HE ARG sing 37 n n CZ NH1 ARG sing 38 n n CZ NH2 ARG doub 39 n n NH1 HH11 ARG sing 40 n n NH1 HH12 ARG sing 41 n n NH2 HH21 ARG sing 42 n n NH2 HH22 ARG sing 43 n n OXT HXT ARG sing 44 n n # _atom_sites.entry_id 6MKU _atom_sites.fract_transf_matrix[1][1] 0.02691 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG E 1 301 1 ARG ARG . C 3 ACT E 1 302 1 ACT ACT . D 4 GOL E 1 303 1 GOL GOL . E 5 HOH E 1 401 135 HOH HOH . E 5 HOH E 2 402 133 HOH HOH . E 5 HOH E 3 403 31 HOH HOH . E 5 HOH E 4 404 136 HOH HOH . E 5 HOH E 5 405 160 HOH HOH . E 5 HOH E 6 406 207 HOH HOH . E 5 HOH E 7 407 64 HOH HOH . E 5 HOH E 8 408 211 HOH HOH . E 5 HOH E 9 409 151 HOH HOH . E 5 HOH E 10 410 228 HOH HOH . E 5 HOH E 11 411 38 HOH HOH . E 5 HOH E 12 412 263 HOH HOH . E 5 HOH E 13 413 20 HOH HOH . E 5 HOH E 14 414 201 HOH HOH . E 5 HOH E 15 415 155 HOH HOH . E 5 HOH E 16 416 186 HOH HOH . E 5 HOH E 17 417 40 HOH HOH . E 5 HOH E 18 418 143 HOH HOH . E 5 HOH E 19 419 163 HOH HOH . E 5 HOH E 20 420 72 HOH HOH . E 5 HOH E 21 421 239 HOH HOH . E 5 HOH E 22 422 6 HOH HOH . E 5 HOH E 23 423 69 HOH HOH . E 5 HOH E 24 424 148 HOH HOH . E 5 HOH E 25 425 97 HOH HOH . E 5 HOH E 26 426 11 HOH HOH . E 5 HOH E 27 427 145 HOH HOH . E 5 HOH E 28 428 47 HOH HOH . E 5 HOH E 29 429 194 HOH HOH . E 5 HOH E 30 430 131 HOH HOH . E 5 HOH E 31 431 157 HOH HOH . E 5 HOH E 32 432 200 HOH HOH . E 5 HOH E 33 433 25 HOH HOH . E 5 HOH E 34 434 87 HOH HOH . E 5 HOH E 35 435 18 HOH HOH . E 5 HOH E 36 436 13 HOH HOH . E 5 HOH E 37 437 216 HOH HOH . E 5 HOH E 38 438 24 HOH HOH . E 5 HOH E 39 439 190 HOH HOH . E 5 HOH E 40 440 121 HOH HOH . E 5 HOH E 41 441 238 HOH HOH . E 5 HOH E 42 442 235 HOH HOH . E 5 HOH E 43 443 242 HOH HOH . E 5 HOH E 44 444 76 HOH HOH . E 5 HOH E 45 445 220 HOH HOH . E 5 HOH E 46 446 158 HOH HOH . E 5 HOH E 47 447 115 HOH HOH . E 5 HOH E 48 448 232 HOH HOH . E 5 HOH E 49 449 37 HOH HOH . E 5 HOH E 50 450 137 HOH HOH . E 5 HOH E 51 451 34 HOH HOH . E 5 HOH E 52 452 141 HOH HOH . E 5 HOH E 53 453 29 HOH HOH . E 5 HOH E 54 454 7 HOH HOH . E 5 HOH E 55 455 161 HOH HOH . E 5 HOH E 56 456 39 HOH HOH . E 5 HOH E 57 457 44 HOH HOH . E 5 HOH E 58 458 153 HOH HOH . E 5 HOH E 59 459 88 HOH HOH . E 5 HOH E 60 460 75 HOH HOH . E 5 HOH E 61 461 154 HOH HOH . E 5 HOH E 62 462 230 HOH HOH . E 5 HOH E 63 463 187 HOH HOH . E 5 HOH E 64 464 112 HOH HOH . E 5 HOH E 65 465 77 HOH HOH . E 5 HOH E 66 466 26 HOH HOH . E 5 HOH E 67 467 167 HOH HOH . E 5 HOH E 68 468 179 HOH HOH . E 5 HOH E 69 469 197 HOH HOH . E 5 HOH E 70 470 59 HOH HOH . E 5 HOH E 71 471 42 HOH HOH . E 5 HOH E 72 472 105 HOH HOH . E 5 HOH E 73 473 132 HOH HOH . E 5 HOH E 74 474 98 HOH HOH . E 5 HOH E 75 475 100 HOH HOH . E 5 HOH E 76 476 10 HOH HOH . E 5 HOH E 77 477 1 HOH HOH . E 5 HOH E 78 478 43 HOH HOH . E 5 HOH E 79 479 61 HOH HOH . E 5 HOH E 80 480 48 HOH HOH . E 5 HOH E 81 481 36 HOH HOH . E 5 HOH E 82 482 22 HOH HOH . E 5 HOH E 83 483 3 HOH HOH . E 5 HOH E 84 484 159 HOH HOH . E 5 HOH E 85 485 53 HOH HOH . E 5 HOH E 86 486 60 HOH HOH . E 5 HOH E 87 487 258 HOH HOH . E 5 HOH E 88 488 19 HOH HOH . E 5 HOH E 89 489 95 HOH HOH . E 5 HOH E 90 490 71 HOH HOH . E 5 HOH E 91 491 30 HOH HOH . E 5 HOH E 92 492 209 HOH HOH . E 5 HOH E 93 493 2 HOH HOH . E 5 HOH E 94 494 173 HOH HOH . E 5 HOH E 95 495 110 HOH HOH . E 5 HOH E 96 496 35 HOH HOH . E 5 HOH E 97 497 17 HOH HOH . E 5 HOH E 98 498 257 HOH HOH . E 5 HOH E 99 499 70 HOH HOH . E 5 HOH E 100 500 14 HOH HOH . E 5 HOH E 101 501 81 HOH HOH . E 5 HOH E 102 502 223 HOH HOH . E 5 HOH E 103 503 82 HOH HOH . E 5 HOH E 104 504 45 HOH HOH . E 5 HOH E 105 505 180 HOH HOH . E 5 HOH E 106 506 23 HOH HOH . E 5 HOH E 107 507 266 HOH HOH . E 5 HOH E 108 508 67 HOH HOH . E 5 HOH E 109 509 248 HOH HOH . E 5 HOH E 110 510 4 HOH HOH . E 5 HOH E 111 511 21 HOH HOH . E 5 HOH E 112 512 15 HOH HOH . E 5 HOH E 113 513 189 HOH HOH . E 5 HOH E 114 514 9 HOH HOH . E 5 HOH E 115 515 54 HOH HOH . E 5 HOH E 116 516 68 HOH HOH . E 5 HOH E 117 517 204 HOH HOH . E 5 HOH E 118 518 252 HOH HOH . E 5 HOH E 119 519 102 HOH HOH . E 5 HOH E 120 520 218 HOH HOH . E 5 HOH E 121 521 52 HOH HOH . E 5 HOH E 122 522 249 HOH HOH . E 5 HOH E 123 523 46 HOH HOH . E 5 HOH E 124 524 91 HOH HOH . E 5 HOH E 125 525 12 HOH HOH . E 5 HOH E 126 526 164 HOH HOH . E 5 HOH E 127 527 168 HOH HOH . E 5 HOH E 128 528 93 HOH HOH . E 5 HOH E 129 529 156 HOH HOH . E 5 HOH E 130 530 49 HOH HOH . E 5 HOH E 131 531 86 HOH HOH . E 5 HOH E 132 532 188 HOH HOH . E 5 HOH E 133 533 199 HOH HOH . E 5 HOH E 134 534 126 HOH HOH . E 5 HOH E 135 535 5 HOH HOH . E 5 HOH E 136 536 140 HOH HOH . E 5 HOH E 137 537 84 HOH HOH . E 5 HOH E 138 538 165 HOH HOH . E 5 HOH E 139 539 206 HOH HOH . E 5 HOH E 140 540 174 HOH HOH . E 5 HOH E 141 541 176 HOH HOH . E 5 HOH E 142 542 125 HOH HOH . E 5 HOH E 143 543 57 HOH HOH . E 5 HOH E 144 544 127 HOH HOH . E 5 HOH E 145 545 170 HOH HOH . E 5 HOH E 146 546 8 HOH HOH . E 5 HOH E 147 547 106 HOH HOH . E 5 HOH E 148 548 111 HOH HOH . E 5 HOH E 149 549 80 HOH HOH . E 5 HOH E 150 550 243 HOH HOH . E 5 HOH E 151 551 109 HOH HOH . E 5 HOH E 152 552 144 HOH HOH . E 5 HOH E 153 553 90 HOH HOH . E 5 HOH E 154 554 138 HOH HOH . E 5 HOH E 155 555 142 HOH HOH . E 5 HOH E 156 556 27 HOH HOH . E 5 HOH E 157 557 62 HOH HOH . E 5 HOH E 158 558 210 HOH HOH . E 5 HOH E 159 559 103 HOH HOH . E 5 HOH E 160 560 162 HOH HOH . E 5 HOH E 161 561 193 HOH HOH . E 5 HOH E 162 562 271 HOH HOH . E 5 HOH E 163 563 147 HOH HOH . E 5 HOH E 164 564 16 HOH HOH . E 5 HOH E 165 565 122 HOH HOH . E 5 HOH E 166 566 275 HOH HOH . E 5 HOH E 167 567 244 HOH HOH . E 5 HOH E 168 568 65 HOH HOH . E 5 HOH E 169 569 261 HOH HOH . E 5 HOH E 170 570 183 HOH HOH . E 5 HOH E 171 571 114 HOH HOH . E 5 HOH E 172 572 264 HOH HOH . E 5 HOH E 173 573 120 HOH HOH . E 5 HOH E 174 574 233 HOH HOH . E 5 HOH E 175 575 50 HOH HOH . E 5 HOH E 176 576 63 HOH HOH . E 5 HOH E 177 577 198 HOH HOH . E 5 HOH E 178 578 265 HOH HOH . E 5 HOH E 179 579 51 HOH HOH . E 5 HOH E 180 580 134 HOH HOH . E 5 HOH E 181 581 260 HOH HOH . E 5 HOH E 182 582 217 HOH HOH . E 5 HOH E 183 583 28 HOH HOH . E 5 HOH E 184 584 166 HOH HOH . E 5 HOH E 185 585 66 HOH HOH . E 5 HOH E 186 586 191 HOH HOH . E 5 HOH E 187 587 273 HOH HOH . E 5 HOH E 188 588 185 HOH HOH . E 5 HOH E 189 589 184 HOH HOH . E 5 HOH E 190 590 58 HOH HOH . E 5 HOH E 191 591 272 HOH HOH . E 5 HOH E 192 592 259 HOH HOH . E 5 HOH E 193 593 113 HOH HOH . E 5 HOH E 194 594 78 HOH HOH . E 5 HOH E 195 595 124 HOH HOH . E 5 HOH E 196 596 83 HOH HOH . E 5 HOH E 197 597 192 HOH HOH . E 5 HOH E 198 598 92 HOH HOH . E 5 HOH E 199 599 215 HOH HOH . E 5 HOH E 200 600 196 HOH HOH . E 5 HOH E 201 601 267 HOH HOH . E 5 HOH E 202 602 181 HOH HOH . E 5 HOH E 203 603 108 HOH HOH . E 5 HOH E 204 604 94 HOH HOH . E 5 HOH E 205 605 107 HOH HOH . E 5 HOH E 206 606 203 HOH HOH . E 5 HOH E 207 607 99 HOH HOH . E 5 HOH E 208 608 268 HOH HOH . E 5 HOH E 209 609 208 HOH HOH . E 5 HOH E 210 610 74 HOH HOH . E 5 HOH E 211 611 96 HOH HOH . E 5 HOH E 212 612 229 HOH HOH . E 5 HOH E 213 613 240 HOH HOH . E 5 HOH E 214 614 118 HOH HOH . E 5 HOH E 215 615 128 HOH HOH . E 5 HOH E 216 616 262 HOH HOH . E 5 HOH E 217 617 152 HOH HOH . E 5 HOH E 218 618 101 HOH HOH . E 5 HOH E 219 619 256 HOH HOH . E 5 HOH E 220 620 226 HOH HOH . E 5 HOH E 221 621 225 HOH HOH . E 5 HOH E 222 622 245 HOH HOH . E 5 HOH E 223 623 219 HOH HOH . E 5 HOH E 224 624 56 HOH HOH . E 5 HOH E 225 625 85 HOH HOH . E 5 HOH E 226 626 222 HOH HOH . E 5 HOH E 227 627 175 HOH HOH . E 5 HOH E 228 628 221 HOH HOH . E 5 HOH E 229 629 41 HOH HOH . E 5 HOH E 230 630 253 HOH HOH . E 5 HOH E 231 631 55 HOH HOH . E 5 HOH E 232 632 146 HOH HOH . E 5 HOH E 233 633 116 HOH HOH . E 5 HOH E 234 634 150 HOH HOH . E 5 HOH E 235 635 250 HOH HOH . E 5 HOH E 236 636 177 HOH HOH . E 5 HOH E 237 637 123 HOH HOH . E 5 HOH E 238 638 119 HOH HOH . E 5 HOH E 239 639 227 HOH HOH . E 5 HOH E 240 640 234 HOH HOH . E 5 HOH E 241 641 254 HOH HOH . E 5 HOH E 242 642 214 HOH HOH . E 5 HOH E 243 643 205 HOH HOH . E 5 HOH E 244 644 269 HOH HOH . E 5 HOH E 245 645 213 HOH HOH . E 5 HOH E 246 646 236 HOH HOH . E 5 HOH E 247 647 117 HOH HOH . E 5 HOH E 248 648 32 HOH HOH . E 5 HOH E 249 649 33 HOH HOH . E 5 HOH E 250 650 73 HOH HOH . E 5 HOH E 251 651 129 HOH HOH . E 5 HOH E 252 652 274 HOH HOH . E 5 HOH E 253 653 195 HOH HOH . E 5 HOH E 254 654 172 HOH HOH . E 5 HOH E 255 655 104 HOH HOH . E 5 HOH E 256 656 251 HOH HOH . E 5 HOH E 257 657 182 HOH HOH . E 5 HOH E 258 658 241 HOH HOH . E 5 HOH E 259 659 202 HOH HOH . E 5 HOH E 260 660 255 HOH HOH . E 5 HOH E 261 661 89 HOH HOH . E 5 HOH E 262 662 224 HOH HOH . E 5 HOH E 263 663 139 HOH HOH . E 5 HOH E 264 664 246 HOH HOH . E 5 HOH E 265 665 247 HOH HOH . E 5 HOH E 266 666 212 HOH HOH . E 5 HOH E 267 667 237 HOH HOH . E 5 HOH E 268 668 231 HOH HOH . E 5 HOH E 269 669 270 HOH HOH . E 5 HOH E 270 670 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . B 2 -0.063 -1.2 -12.179 1 5.29 ? N ARG 301 E 1 HETATM 2 C CA ARG . . . B 2 0.108 -2 -10.961 1 4.08 ? CA ARG 301 E 1 HETATM 3 C C ARG . . . B 2 -0.407 -1.214 -9.767 1 5.56 ? C ARG 301 E 1 HETATM 4 O O ARG . . . B 2 -0.7 -0.018 -9.914 1 4.44 ? O ARG 301 E 1 HETATM 5 C CB ARG . . . B 2 1.576 -2.376 -10.745 1 1.69 ? CB ARG 301 E 1 HETATM 6 C CG ARG . . . B 2 2.519 -1.186 -10.843 1 2.99 ? CG ARG 301 E 1 HETATM 7 C CD ARG . . . B 2 3.888 -1.472 -10.242 1 8.34 ? CD ARG 301 E 1 HETATM 8 N NE ARG . . . B 2 4.848 -0.429 -10.587 1 3.78 ? NE ARG 301 E 1 HETATM 9 C CZ ARG . . . B 2 6.123 -0.41 -10.196 1 3.3 ? CZ ARG 301 E 1 HETATM 10 N NH1 ARG . . . B 2 6.59 -1.376 -9.425 1 3.57 ? NH1 ARG 301 E 1 HETATM 11 N NH2 ARG . . . B 2 6.939 0.576 -10.576 1 1.01 ? NH2 ARG 301 E 1 HETATM 12 O OXT ARG . . . B 2 -0.523 -1.724 -8.654 1 2.91 ? OXT ARG 301 E 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #