data_6MKV
#
_model_server_result.job_id            8fAq6CHv2dZH7tfKWiIg2A 
_model_server_result.datetime_utc      '2024-11-15 11:23:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mkv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":204}' 
#
_entry.id    6MKV 
#
_exptl.entry_id    6MKV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.31 
_cell.angle_gamma         90 
_cell.entry_id            6MKV 
_cell.length_a            36.332 
_cell.length_b            63.137 
_cell.length_c            118.218 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MKV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,I,J,Q,S 1 1 
B,D,E,F,G,H,K,L,M,N,O,P,R,T 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B NZ LYS 108 B LYS 108 1_555 E C15 RET . B RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.264 ? 
covale ? covale2 C NZ LYS 108 C LYS 108 1_555 I C15 RET . C RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.259 ? 
covale ? covale3 D NZ LYS 108 D LYS 108 1_555 K C15 RET . D RET 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     6MKV 
_atom_sites.fract_transf_matrix[1][1]    0.027524 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003045 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015839 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008511 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 RET B 1 201 4 RET RET . 
F 3 ACT B 1 202 3 ACT ACT . 
G 3 ACT B 1 203 4 ACT ACT . 
H 4 GOL B 1 204 2 GOL GOL . 
I 2 RET C 1 201 1 RET RET . 
J 3 ACT C 1 202 5 ACT ACT . 
K 2 RET D 1 201 3 RET RET . 
L 3 ACT D 1 202 1 ACT ACT . 
M 3 ACT D 1 203 8 ACT ACT . 
N 3 ACT D 1 204 9 ACT ACT . 
O 3 ACT D 1 205 14 ACT ACT . 
P 4 GOL D 1 206 1 GOL GOL . 
Q 5 HOH A 1 201 46 HOH HOH . 
Q 5 HOH A 2 202 71 HOH HOH . 
Q 5 HOH A 3 203 108 HOH HOH . 
Q 5 HOH A 4 204 145 HOH HOH . 
Q 5 HOH A 5 205 16 HOH HOH . 
Q 5 HOH A 6 206 133 HOH HOH . 
Q 5 HOH A 7 207 107 HOH HOH . 
Q 5 HOH A 8 208 42 HOH HOH . 
Q 5 HOH A 9 209 141 HOH HOH . 
Q 5 HOH A 10 210 104 HOH HOH . 
Q 5 HOH A 11 211 28 HOH HOH . 
Q 5 HOH A 12 212 70 HOH HOH . 
Q 5 HOH A 13 213 7 HOH HOH . 
Q 5 HOH A 14 214 143 HOH HOH . 
Q 5 HOH A 15 215 95 HOH HOH . 
Q 5 HOH A 16 216 92 HOH HOH . 
Q 5 HOH A 17 217 66 HOH HOH . 
Q 5 HOH A 18 218 188 HOH HOH . 
Q 5 HOH A 19 219 138 HOH HOH . 
Q 5 HOH A 20 220 190 HOH HOH . 
R 5 HOH B 1 301 52 HOH HOH . 
R 5 HOH B 2 302 19 HOH HOH . 
R 5 HOH B 3 303 75 HOH HOH . 
R 5 HOH B 4 304 169 HOH HOH . 
R 5 HOH B 5 305 45 HOH HOH . 
R 5 HOH B 6 306 73 HOH HOH . 
R 5 HOH B 7 307 101 HOH HOH . 
R 5 HOH B 8 308 96 HOH HOH . 
R 5 HOH B 9 309 146 HOH HOH . 
R 5 HOH B 10 310 41 HOH HOH . 
R 5 HOH B 11 311 99 HOH HOH . 
R 5 HOH B 12 312 113 HOH HOH . 
R 5 HOH B 13 313 59 HOH HOH . 
R 5 HOH B 14 314 91 HOH HOH . 
R 5 HOH B 15 315 86 HOH HOH . 
R 5 HOH B 16 316 50 HOH HOH . 
R 5 HOH B 17 317 29 HOH HOH . 
R 5 HOH B 18 318 24 HOH HOH . 
R 5 HOH B 19 319 40 HOH HOH . 
R 5 HOH B 20 320 123 HOH HOH . 
R 5 HOH B 21 321 110 HOH HOH . 
R 5 HOH B 22 322 14 HOH HOH . 
R 5 HOH B 23 323 30 HOH HOH . 
R 5 HOH B 24 324 9 HOH HOH . 
R 5 HOH B 25 325 212 HOH HOH . 
R 5 HOH B 26 326 98 HOH HOH . 
R 5 HOH B 27 327 201 HOH HOH . 
R 5 HOH B 28 328 206 HOH HOH . 
R 5 HOH B 29 329 64 HOH HOH . 
R 5 HOH B 30 330 170 HOH HOH . 
R 5 HOH B 31 331 67 HOH HOH . 
R 5 HOH B 32 332 88 HOH HOH . 
R 5 HOH B 33 333 119 HOH HOH . 
R 5 HOH B 34 334 203 HOH HOH . 
R 5 HOH B 35 335 22 HOH HOH . 
R 5 HOH B 36 336 48 HOH HOH . 
R 5 HOH B 37 337 33 HOH HOH . 
R 5 HOH B 38 338 200 HOH HOH . 
R 5 HOH B 39 339 128 HOH HOH . 
R 5 HOH B 40 340 149 HOH HOH . 
R 5 HOH B 41 341 144 HOH HOH . 
R 5 HOH B 42 342 32 HOH HOH . 
R 5 HOH B 43 343 167 HOH HOH . 
R 5 HOH B 44 344 168 HOH HOH . 
S 5 HOH C 1 301 72 HOH HOH . 
S 5 HOH C 2 302 131 HOH HOH . 
S 5 HOH C 3 303 195 HOH HOH . 
S 5 HOH C 4 304 36 HOH HOH . 
S 5 HOH C 5 305 151 HOH HOH . 
S 5 HOH C 6 306 60 HOH HOH . 
S 5 HOH C 7 307 111 HOH HOH . 
S 5 HOH C 8 308 76 HOH HOH . 
S 5 HOH C 9 309 142 HOH HOH . 
S 5 HOH C 10 310 26 HOH HOH . 
S 5 HOH C 11 311 35 HOH HOH . 
S 5 HOH C 12 312 114 HOH HOH . 
S 5 HOH C 13 313 183 HOH HOH . 
S 5 HOH C 14 314 13 HOH HOH . 
S 5 HOH C 15 315 176 HOH HOH . 
S 5 HOH C 16 316 15 HOH HOH . 
S 5 HOH C 17 317 152 HOH HOH . 
S 5 HOH C 18 318 85 HOH HOH . 
S 5 HOH C 19 319 210 HOH HOH . 
S 5 HOH C 20 320 93 HOH HOH . 
S 5 HOH C 21 321 197 HOH HOH . 
S 5 HOH C 22 322 135 HOH HOH . 
S 5 HOH C 23 323 44 HOH HOH . 
S 5 HOH C 24 324 34 HOH HOH . 
S 5 HOH C 25 325 84 HOH HOH . 
S 5 HOH C 26 326 192 HOH HOH . 
S 5 HOH C 27 327 80 HOH HOH . 
S 5 HOH C 28 328 186 HOH HOH . 
S 5 HOH C 29 329 132 HOH HOH . 
S 5 HOH C 30 330 68 HOH HOH . 
S 5 HOH C 31 331 187 HOH HOH . 
S 5 HOH C 32 332 196 HOH HOH . 
S 5 HOH C 33 333 139 HOH HOH . 
S 5 HOH C 34 334 182 HOH HOH . 
S 5 HOH C 35 335 47 HOH HOH . 
S 5 HOH C 36 336 193 HOH HOH . 
S 5 HOH C 37 337 43 HOH HOH . 
S 5 HOH C 38 338 174 HOH HOH . 
S 5 HOH C 39 339 194 HOH HOH . 
S 5 HOH C 40 340 173 HOH HOH . 
S 5 HOH C 41 341 172 HOH HOH . 
S 5 HOH C 42 342 116 HOH HOH . 
S 5 HOH C 43 343 185 HOH HOH . 
S 5 HOH C 44 344 175 HOH HOH . 
S 5 HOH C 45 345 177 HOH HOH . 
S 5 HOH C 46 346 198 HOH HOH . 
S 5 HOH C 47 347 181 HOH HOH . 
S 5 HOH C 48 348 179 HOH HOH . 
T 5 HOH D 1 301 125 HOH HOH . 
T 5 HOH D 2 302 53 HOH HOH . 
T 5 HOH D 3 303 89 HOH HOH . 
T 5 HOH D 4 304 37 HOH HOH . 
T 5 HOH D 5 305 124 HOH HOH . 
T 5 HOH D 6 306 8 HOH HOH . 
T 5 HOH D 7 307 57 HOH HOH . 
T 5 HOH D 8 308 77 HOH HOH . 
T 5 HOH D 9 309 136 HOH HOH . 
T 5 HOH D 10 310 105 HOH HOH . 
T 5 HOH D 11 311 69 HOH HOH . 
T 5 HOH D 12 312 11 HOH HOH . 
T 5 HOH D 13 313 12 HOH HOH . 
T 5 HOH D 14 314 94 HOH HOH . 
T 5 HOH D 15 315 18 HOH HOH . 
T 5 HOH D 16 316 147 HOH HOH . 
T 5 HOH D 17 317 81 HOH HOH . 
T 5 HOH D 18 318 2 HOH HOH . 
T 5 HOH D 19 319 27 HOH HOH . 
T 5 HOH D 20 320 204 HOH HOH . 
T 5 HOH D 21 321 31 HOH HOH . 
T 5 HOH D 22 322 10 HOH HOH . 
T 5 HOH D 23 323 21 HOH HOH . 
T 5 HOH D 24 324 90 HOH HOH . 
T 5 HOH D 25 325 62 HOH HOH . 
T 5 HOH D 26 326 23 HOH HOH . 
T 5 HOH D 27 327 51 HOH HOH . 
T 5 HOH D 28 328 130 HOH HOH . 
T 5 HOH D 29 329 211 HOH HOH . 
T 5 HOH D 30 330 5 HOH HOH . 
T 5 HOH D 31 331 3 HOH HOH . 
T 5 HOH D 32 332 199 HOH HOH . 
T 5 HOH D 33 333 56 HOH HOH . 
T 5 HOH D 34 334 205 HOH HOH . 
T 5 HOH D 35 335 55 HOH HOH . 
T 5 HOH D 36 336 171 HOH HOH . 
T 5 HOH D 37 337 202 HOH HOH . 
T 5 HOH D 38 338 213 HOH HOH . 
T 5 HOH D 39 339 25 HOH HOH . 
T 5 HOH D 40 340 58 HOH HOH . 
T 5 HOH D 41 341 127 HOH HOH . 
T 5 HOH D 42 342 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 -0.206 4.37 -3.593 1 46.95 ? C1 GOL 204 B 1 
HETATM 2 O O1 GOL . . . H 4 -0.515 3.462 -2.539 1 47.21 ? O1 GOL 204 B 1 
HETATM 3 C C2 GOL . . . H 4 -1.293 4.348 -4.674 1 53.39 ? C2 GOL 204 B 1 
HETATM 4 O O2 GOL . . . H 4 -1.983 5.592 -4.8 1 47.06 ? O2 GOL 204 B 1 
HETATM 5 C C3 GOL . . . H 4 -0.682 3.901 -6.006 1 56.08 ? C3 GOL 204 B 1 
HETATM 6 O O3 GOL . . . H 4 0.46 4.682 -6.316 1 53.63 ? O3 GOL 204 B 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#