data_6MKW # _model_server_result.job_id eqwnQYCQtDoakzLQlPedhw _model_server_result.datetime_utc '2024-11-13 04:09:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6mkw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6MKW # _exptl.entry_id 6MKW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6MKW _cell.length_a 36.897 _cell.length_b 59.016 _cell.length_c 115.544 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MKW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 37 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 38 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 44 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 45 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.975 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6MKW _atom_sites.fract_transf_matrix[1][1] 0.027102 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HIS A 1 301 301 HIS HIS . C 3 GOL A 1 302 401 GOL GOL . D 3 GOL A 1 303 501 GOL GOL . E 4 HOH A 1 401 87 HOH HOH . E 4 HOH A 2 402 56 HOH HOH . E 4 HOH A 3 403 26 HOH HOH . E 4 HOH A 4 404 46 HOH HOH . E 4 HOH A 5 405 21 HOH HOH . E 4 HOH A 6 406 74 HOH HOH . E 4 HOH A 7 407 5 HOH HOH . E 4 HOH A 8 408 23 HOH HOH . E 4 HOH A 9 409 9 HOH HOH . E 4 HOH A 10 410 32 HOH HOH . E 4 HOH A 11 411 101 HOH HOH . E 4 HOH A 12 412 49 HOH HOH . E 4 HOH A 13 413 43 HOH HOH . E 4 HOH A 14 414 15 HOH HOH . E 4 HOH A 15 415 3 HOH HOH . E 4 HOH A 16 416 20 HOH HOH . E 4 HOH A 17 417 60 HOH HOH . E 4 HOH A 18 418 33 HOH HOH . E 4 HOH A 19 419 19 HOH HOH . E 4 HOH A 20 420 38 HOH HOH . E 4 HOH A 21 421 82 HOH HOH . E 4 HOH A 22 422 48 HOH HOH . E 4 HOH A 23 423 7 HOH HOH . E 4 HOH A 24 424 50 HOH HOH . E 4 HOH A 25 425 27 HOH HOH . E 4 HOH A 26 426 6 HOH HOH . E 4 HOH A 27 427 22 HOH HOH . E 4 HOH A 28 428 81 HOH HOH . E 4 HOH A 29 429 37 HOH HOH . E 4 HOH A 30 430 25 HOH HOH . E 4 HOH A 31 431 35 HOH HOH . E 4 HOH A 32 432 41 HOH HOH . E 4 HOH A 33 433 24 HOH HOH . E 4 HOH A 34 434 29 HOH HOH . E 4 HOH A 35 435 64 HOH HOH . E 4 HOH A 36 436 2 HOH HOH . E 4 HOH A 37 437 83 HOH HOH . E 4 HOH A 38 438 68 HOH HOH . E 4 HOH A 39 439 52 HOH HOH . E 4 HOH A 40 440 53 HOH HOH . E 4 HOH A 41 441 84 HOH HOH . E 4 HOH A 42 442 96 HOH HOH . E 4 HOH A 43 443 11 HOH HOH . E 4 HOH A 44 444 8 HOH HOH . E 4 HOH A 45 445 16 HOH HOH . E 4 HOH A 46 446 111 HOH HOH . E 4 HOH A 47 447 18 HOH HOH . E 4 HOH A 48 448 45 HOH HOH . E 4 HOH A 49 449 93 HOH HOH . E 4 HOH A 50 450 72 HOH HOH . E 4 HOH A 51 451 4 HOH HOH . E 4 HOH A 52 452 73 HOH HOH . E 4 HOH A 53 453 62 HOH HOH . E 4 HOH A 54 454 106 HOH HOH . E 4 HOH A 55 455 1 HOH HOH . E 4 HOH A 56 456 121 HOH HOH . E 4 HOH A 57 457 69 HOH HOH . E 4 HOH A 58 458 79 HOH HOH . E 4 HOH A 59 459 99 HOH HOH . E 4 HOH A 60 460 70 HOH HOH . E 4 HOH A 61 461 109 HOH HOH . E 4 HOH A 62 462 12 HOH HOH . E 4 HOH A 63 463 67 HOH HOH . E 4 HOH A 64 464 17 HOH HOH . E 4 HOH A 65 465 98 HOH HOH . E 4 HOH A 66 466 122 HOH HOH . E 4 HOH A 67 467 103 HOH HOH . E 4 HOH A 68 468 40 HOH HOH . E 4 HOH A 69 469 13 HOH HOH . E 4 HOH A 70 470 104 HOH HOH . E 4 HOH A 71 471 63 HOH HOH . E 4 HOH A 72 472 34 HOH HOH . E 4 HOH A 73 473 80 HOH HOH . E 4 HOH A 74 474 42 HOH HOH . E 4 HOH A 75 475 95 HOH HOH . E 4 HOH A 76 476 57 HOH HOH . E 4 HOH A 77 477 36 HOH HOH . E 4 HOH A 78 478 54 HOH HOH . E 4 HOH A 79 479 112 HOH HOH . E 4 HOH A 80 480 92 HOH HOH . E 4 HOH A 81 481 88 HOH HOH . E 4 HOH A 82 482 115 HOH HOH . E 4 HOH A 83 483 10 HOH HOH . E 4 HOH A 84 484 119 HOH HOH . E 4 HOH A 85 485 78 HOH HOH . E 4 HOH A 86 486 85 HOH HOH . E 4 HOH A 87 487 90 HOH HOH . E 4 HOH A 88 488 86 HOH HOH . E 4 HOH A 89 489 51 HOH HOH . E 4 HOH A 90 490 118 HOH HOH . E 4 HOH A 91 491 75 HOH HOH . E 4 HOH A 92 492 59 HOH HOH . E 4 HOH A 93 493 100 HOH HOH . E 4 HOH A 94 494 39 HOH HOH . E 4 HOH A 95 495 76 HOH HOH . E 4 HOH A 96 496 61 HOH HOH . E 4 HOH A 97 497 110 HOH HOH . E 4 HOH A 98 498 113 HOH HOH . E 4 HOH A 99 499 114 HOH HOH . E 4 HOH A 100 500 47 HOH HOH . E 4 HOH A 101 501 102 HOH HOH . E 4 HOH A 102 502 44 HOH HOH . E 4 HOH A 103 503 91 HOH HOH . E 4 HOH A 104 504 116 HOH HOH . E 4 HOH A 105 505 120 HOH HOH . E 4 HOH A 106 506 123 HOH HOH . E 4 HOH A 107 507 89 HOH HOH . E 4 HOH A 108 508 55 HOH HOH . E 4 HOH A 109 509 97 HOH HOH . E 4 HOH A 110 510 58 HOH HOH . E 4 HOH A 111 511 71 HOH HOH . E 4 HOH A 112 512 66 HOH HOH . E 4 HOH A 113 513 65 HOH HOH . E 4 HOH A 114 514 30 HOH HOH . E 4 HOH A 115 515 108 HOH HOH . E 4 HOH A 116 516 117 HOH HOH . E 4 HOH A 117 517 31 HOH HOH . E 4 HOH A 118 518 105 HOH HOH . E 4 HOH A 119 519 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 16.5 55.718 35.936 1 22.09 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 3 17.496 55.223 36.817 1 20.78 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 3 17.147 56.384 34.75 1 25.08 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 3 17.938 57.49 35.19 1 24.15 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 3 16.161 56.841 33.701 1 24.04 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 3 16.859 57.547 32.681 1 25.77 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #