data_6ML9 # _model_server_result.job_id -qhTopks57-Sa7tCSgLHgg _model_server_result.datetime_utc '2024-11-13 04:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ml9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6ML9 # _exptl.entry_id 6ML9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6ML9 _cell.length_a 37.179 _cell.length_b 57.766 _cell.length_c 101.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6ML9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 38 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 38 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 45 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.034 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 6ML9 _atom_sites.fract_transf_matrix[1][1] 0.026897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ARG E 1 301 1 ARG ARG . C 3 ACT E 1 302 2 ACT ACT . D 3 ACT E 1 303 3 ACT ACT . E 4 GOL E 1 304 1 GOL GOL . F 5 HOH E 1 401 118 HOH HOH . F 5 HOH E 2 402 269 HOH HOH . F 5 HOH E 3 403 92 HOH HOH . F 5 HOH E 4 404 122 HOH HOH . F 5 HOH E 5 405 109 HOH HOH . F 5 HOH E 6 406 114 HOH HOH . F 5 HOH E 7 407 146 HOH HOH . F 5 HOH E 8 408 165 HOH HOH . F 5 HOH E 9 409 19 HOH HOH . F 5 HOH E 10 410 51 HOH HOH . F 5 HOH E 11 411 115 HOH HOH . F 5 HOH E 12 412 24 HOH HOH . F 5 HOH E 13 413 82 HOH HOH . F 5 HOH E 14 414 145 HOH HOH . F 5 HOH E 15 415 140 HOH HOH . F 5 HOH E 16 416 81 HOH HOH . F 5 HOH E 17 417 48 HOH HOH . F 5 HOH E 18 418 52 HOH HOH . F 5 HOH E 19 419 95 HOH HOH . F 5 HOH E 20 420 10 HOH HOH . F 5 HOH E 21 421 106 HOH HOH . F 5 HOH E 22 422 169 HOH HOH . F 5 HOH E 23 423 99 HOH HOH . F 5 HOH E 24 424 229 HOH HOH . F 5 HOH E 25 425 75 HOH HOH . F 5 HOH E 26 426 3 HOH HOH . F 5 HOH E 27 427 156 HOH HOH . F 5 HOH E 28 428 93 HOH HOH . F 5 HOH E 29 429 70 HOH HOH . F 5 HOH E 30 430 47 HOH HOH . F 5 HOH E 31 431 219 HOH HOH . F 5 HOH E 32 432 42 HOH HOH . F 5 HOH E 33 433 13 HOH HOH . F 5 HOH E 34 434 2 HOH HOH . F 5 HOH E 35 435 22 HOH HOH . F 5 HOH E 36 436 5 HOH HOH . F 5 HOH E 37 437 271 HOH HOH . F 5 HOH E 38 438 14 HOH HOH . F 5 HOH E 39 439 54 HOH HOH . F 5 HOH E 40 440 245 HOH HOH . F 5 HOH E 41 441 134 HOH HOH . F 5 HOH E 42 442 201 HOH HOH . F 5 HOH E 43 443 15 HOH HOH . F 5 HOH E 44 444 85 HOH HOH . F 5 HOH E 45 445 258 HOH HOH . F 5 HOH E 46 446 20 HOH HOH . F 5 HOH E 47 447 56 HOH HOH . F 5 HOH E 48 448 97 HOH HOH . F 5 HOH E 49 449 101 HOH HOH . F 5 HOH E 50 450 53 HOH HOH . F 5 HOH E 51 451 41 HOH HOH . F 5 HOH E 52 452 84 HOH HOH . F 5 HOH E 53 453 162 HOH HOH . F 5 HOH E 54 454 50 HOH HOH . F 5 HOH E 55 455 36 HOH HOH . F 5 HOH E 56 456 147 HOH HOH . F 5 HOH E 57 457 57 HOH HOH . F 5 HOH E 58 458 21 HOH HOH . F 5 HOH E 59 459 65 HOH HOH . F 5 HOH E 60 460 131 HOH HOH . F 5 HOH E 61 461 43 HOH HOH . F 5 HOH E 62 462 27 HOH HOH . F 5 HOH E 63 463 60 HOH HOH . F 5 HOH E 64 464 267 HOH HOH . F 5 HOH E 65 465 164 HOH HOH . F 5 HOH E 66 466 144 HOH HOH . F 5 HOH E 67 467 33 HOH HOH . F 5 HOH E 68 468 117 HOH HOH . F 5 HOH E 69 469 132 HOH HOH . F 5 HOH E 70 470 111 HOH HOH . F 5 HOH E 71 471 91 HOH HOH . F 5 HOH E 72 472 61 HOH HOH . F 5 HOH E 73 473 31 HOH HOH . F 5 HOH E 74 474 205 HOH HOH . F 5 HOH E 75 475 102 HOH HOH . F 5 HOH E 76 476 113 HOH HOH . F 5 HOH E 77 477 39 HOH HOH . F 5 HOH E 78 478 90 HOH HOH . F 5 HOH E 79 479 160 HOH HOH . F 5 HOH E 80 480 273 HOH HOH . F 5 HOH E 81 481 124 HOH HOH . F 5 HOH E 82 482 6 HOH HOH . F 5 HOH E 83 483 194 HOH HOH . F 5 HOH E 84 484 125 HOH HOH . F 5 HOH E 85 485 9 HOH HOH . F 5 HOH E 86 486 7 HOH HOH . F 5 HOH E 87 487 40 HOH HOH . F 5 HOH E 88 488 88 HOH HOH . F 5 HOH E 89 489 121 HOH HOH . F 5 HOH E 90 490 12 HOH HOH . F 5 HOH E 91 491 129 HOH HOH . F 5 HOH E 92 492 38 HOH HOH . F 5 HOH E 93 493 178 HOH HOH . F 5 HOH E 94 494 153 HOH HOH . F 5 HOH E 95 495 71 HOH HOH . F 5 HOH E 96 496 159 HOH HOH . F 5 HOH E 97 497 103 HOH HOH . F 5 HOH E 98 498 25 HOH HOH . F 5 HOH E 99 499 110 HOH HOH . F 5 HOH E 100 500 104 HOH HOH . F 5 HOH E 101 501 151 HOH HOH . F 5 HOH E 102 502 32 HOH HOH . F 5 HOH E 103 503 253 HOH HOH . F 5 HOH E 104 504 46 HOH HOH . F 5 HOH E 105 505 1 HOH HOH . F 5 HOH E 106 506 181 HOH HOH . F 5 HOH E 107 507 208 HOH HOH . F 5 HOH E 108 508 96 HOH HOH . F 5 HOH E 109 509 236 HOH HOH . F 5 HOH E 110 510 256 HOH HOH . F 5 HOH E 111 511 207 HOH HOH . F 5 HOH E 112 512 248 HOH HOH . F 5 HOH E 113 513 16 HOH HOH . F 5 HOH E 114 514 217 HOH HOH . F 5 HOH E 115 515 4 HOH HOH . F 5 HOH E 116 516 17 HOH HOH . F 5 HOH E 117 517 235 HOH HOH . F 5 HOH E 118 518 29 HOH HOH . F 5 HOH E 119 519 206 HOH HOH . F 5 HOH E 120 520 126 HOH HOH . F 5 HOH E 121 521 28 HOH HOH . F 5 HOH E 122 522 218 HOH HOH . F 5 HOH E 123 523 11 HOH HOH . F 5 HOH E 124 524 188 HOH HOH . F 5 HOH E 125 525 158 HOH HOH . F 5 HOH E 126 526 142 HOH HOH . F 5 HOH E 127 527 83 HOH HOH . F 5 HOH E 128 528 155 HOH HOH . F 5 HOH E 129 529 59 HOH HOH . F 5 HOH E 130 530 135 HOH HOH . F 5 HOH E 131 531 55 HOH HOH . F 5 HOH E 132 532 172 HOH HOH . F 5 HOH E 133 533 23 HOH HOH . F 5 HOH E 134 534 98 HOH HOH . F 5 HOH E 135 535 63 HOH HOH . F 5 HOH E 136 536 150 HOH HOH . F 5 HOH E 137 537 116 HOH HOH . F 5 HOH E 138 538 215 HOH HOH . F 5 HOH E 139 539 139 HOH HOH . F 5 HOH E 140 540 120 HOH HOH . F 5 HOH E 141 541 34 HOH HOH . F 5 HOH E 142 542 18 HOH HOH . F 5 HOH E 143 543 105 HOH HOH . F 5 HOH E 144 544 174 HOH HOH . F 5 HOH E 145 545 94 HOH HOH . F 5 HOH E 146 546 127 HOH HOH . F 5 HOH E 147 547 58 HOH HOH . F 5 HOH E 148 548 200 HOH HOH . F 5 HOH E 149 549 37 HOH HOH . F 5 HOH E 150 550 66 HOH HOH . F 5 HOH E 151 551 72 HOH HOH . F 5 HOH E 152 552 74 HOH HOH . F 5 HOH E 153 553 8 HOH HOH . F 5 HOH E 154 554 68 HOH HOH . F 5 HOH E 155 555 69 HOH HOH . F 5 HOH E 156 556 35 HOH HOH . F 5 HOH E 157 557 77 HOH HOH . F 5 HOH E 158 558 119 HOH HOH . F 5 HOH E 159 559 241 HOH HOH . F 5 HOH E 160 560 183 HOH HOH . F 5 HOH E 161 561 79 HOH HOH . F 5 HOH E 162 562 275 HOH HOH . F 5 HOH E 163 563 87 HOH HOH . F 5 HOH E 164 564 190 HOH HOH . F 5 HOH E 165 565 137 HOH HOH . F 5 HOH E 166 566 62 HOH HOH . F 5 HOH E 167 567 148 HOH HOH . F 5 HOH E 168 568 67 HOH HOH . F 5 HOH E 169 569 175 HOH HOH . F 5 HOH E 170 570 78 HOH HOH . F 5 HOH E 171 571 168 HOH HOH . F 5 HOH E 172 572 44 HOH HOH . F 5 HOH E 173 573 187 HOH HOH . F 5 HOH E 174 574 171 HOH HOH . F 5 HOH E 175 575 112 HOH HOH . F 5 HOH E 176 576 136 HOH HOH . F 5 HOH E 177 577 189 HOH HOH . F 5 HOH E 178 578 254 HOH HOH . F 5 HOH E 179 579 166 HOH HOH . F 5 HOH E 180 580 272 HOH HOH . F 5 HOH E 181 581 270 HOH HOH . F 5 HOH E 182 582 141 HOH HOH . F 5 HOH E 183 583 143 HOH HOH . F 5 HOH E 184 584 76 HOH HOH . F 5 HOH E 185 585 228 HOH HOH . F 5 HOH E 186 586 263 HOH HOH . F 5 HOH E 187 587 49 HOH HOH . F 5 HOH E 188 588 154 HOH HOH . F 5 HOH E 189 589 199 HOH HOH . F 5 HOH E 190 590 255 HOH HOH . F 5 HOH E 191 591 265 HOH HOH . F 5 HOH E 192 592 179 HOH HOH . F 5 HOH E 193 593 130 HOH HOH . F 5 HOH E 194 594 266 HOH HOH . F 5 HOH E 195 595 108 HOH HOH . F 5 HOH E 196 596 107 HOH HOH . F 5 HOH E 197 597 192 HOH HOH . F 5 HOH E 198 598 225 HOH HOH . F 5 HOH E 199 599 152 HOH HOH . F 5 HOH E 200 600 80 HOH HOH . F 5 HOH E 201 601 268 HOH HOH . F 5 HOH E 202 602 195 HOH HOH . F 5 HOH E 203 603 232 HOH HOH . F 5 HOH E 204 604 86 HOH HOH . F 5 HOH E 205 605 243 HOH HOH . F 5 HOH E 206 606 73 HOH HOH . F 5 HOH E 207 607 177 HOH HOH . F 5 HOH E 208 608 259 HOH HOH . F 5 HOH E 209 609 176 HOH HOH . F 5 HOH E 210 610 214 HOH HOH . F 5 HOH E 211 611 274 HOH HOH . F 5 HOH E 212 612 209 HOH HOH . F 5 HOH E 213 613 138 HOH HOH . F 5 HOH E 214 614 227 HOH HOH . F 5 HOH E 215 615 262 HOH HOH . F 5 HOH E 216 616 123 HOH HOH . F 5 HOH E 217 617 161 HOH HOH . F 5 HOH E 218 618 238 HOH HOH . F 5 HOH E 219 619 222 HOH HOH . F 5 HOH E 220 620 89 HOH HOH . F 5 HOH E 221 621 202 HOH HOH . F 5 HOH E 222 622 221 HOH HOH . F 5 HOH E 223 623 30 HOH HOH . F 5 HOH E 224 624 240 HOH HOH . F 5 HOH E 225 625 180 HOH HOH . F 5 HOH E 226 626 230 HOH HOH . F 5 HOH E 227 627 64 HOH HOH . F 5 HOH E 228 628 257 HOH HOH . F 5 HOH E 229 629 182 HOH HOH . F 5 HOH E 230 630 242 HOH HOH . F 5 HOH E 231 631 193 HOH HOH . F 5 HOH E 232 632 213 HOH HOH . F 5 HOH E 233 633 184 HOH HOH . F 5 HOH E 234 634 204 HOH HOH . F 5 HOH E 235 635 173 HOH HOH . F 5 HOH E 236 636 100 HOH HOH . F 5 HOH E 237 637 260 HOH HOH . F 5 HOH E 238 638 261 HOH HOH . F 5 HOH E 239 639 264 HOH HOH . F 5 HOH E 240 640 45 HOH HOH . F 5 HOH E 241 641 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 21.156 -10.604 -26.602 1 49.33 ? C1 GOL 304 E 1 HETATM 2 O O1 GOL . . . E 4 21.234 -9.21 -26.884 1 50.04 ? O1 GOL 304 E 1 HETATM 3 C C2 GOL . . . E 4 19.897 -10.955 -25.806 1 44.8 ? C2 GOL 304 E 1 HETATM 4 O O2 GOL . . . E 4 18.712 -10.715 -26.515 1 37.29 ? O2 GOL 304 E 1 HETATM 5 C C3 GOL . . . E 4 19.871 -12.414 -25.372 1 47.04 ? C3 GOL 304 E 1 HETATM 6 O O3 GOL . . . E 4 18.613 -12.671 -24.763 1 34.37 ? O3 GOL 304 E 1 HETATM 7 H H11 GOL . . . E 4 21.158 -11.162 -27.538 1 59.2 ? H11 GOL 304 E 1 HETATM 8 H H12 GOL . . . E 4 22.037 -10.906 -26.034 1 59.2 ? H12 GOL 304 E 1 HETATM 9 H HO1 GOL . . . E 4 22.082 -9.015 -27.335 1 60.05 ? HO1 GOL 304 E 1 HETATM 10 H H2 GOL . . . E 4 19.896 -10.342 -24.905 1 53.77 ? H2 GOL 304 E 1 HETATM 11 H HO2 GOL . . . E 4 18.666 -11.315 -27.289 1 44.74 ? HO2 GOL 304 E 1 HETATM 12 H H31 GOL . . . E 4 20.007 -13.064 -26.237 1 56.44 ? H31 GOL 304 E 1 HETATM 13 H H32 GOL . . . E 4 20.676 -12.608 -24.664 1 56.44 ? H32 GOL 304 E 1 HETATM 14 H HO3 GOL . . . E 4 18.508 -13.635 -24.624 1 41.25 ? HO3 GOL 304 E 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #