data_6MLB
#
_model_server_result.job_id            6uHQT2y4m_WL8kFo5yqxGg 
_model_server_result.datetime_utc      '2024-11-15 13:21:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mlb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":204}' 
#
_entry.id    6MLB 
#
_exptl.entry_id    6MLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.94 
_cell.angle_gamma         90 
_cell.entry_id            6MLB 
_cell.length_a            36.476 
_cell.length_b            63.282 
_cell.length_c            117.782 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F,G,H,I,P,R 1 1 
B,D,E,J,K,L,M,N,O,Q,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C NZ LYS 108 C LYS 108 1_555 I C15 RET . C RET 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.261 ? 
covale ? covale2 D NZ LYS 108 D LYS 108 1_555 O C15 RET . D RET 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 279 n n 
C1 C6 RET sing 280 n n 
C1 C16 RET sing 281 n n 
C1 C17 RET sing 282 n n 
C2 C3 RET sing 283 n n 
C2 H21 RET sing 284 n n 
C2 H22 RET sing 285 n n 
C3 C4 RET sing 286 n n 
C3 H31 RET sing 287 n n 
C3 H32 RET sing 288 n n 
C4 C5 RET sing 289 n n 
C4 H41 RET sing 290 n n 
C4 H42 RET sing 291 n n 
C5 C6 RET doub 292 n n 
C5 C18 RET sing 293 n n 
C6 C7 RET sing 294 n n 
C7 C8 RET doub 295 e n 
C7 H7 RET sing 296 n n 
C8 C9 RET sing 297 n n 
C8 H8 RET sing 298 n n 
C9 C10 RET doub 299 e n 
C9 C19 RET sing 300 n n 
C10 C11 RET sing 301 n n 
C10 H10 RET sing 302 n n 
C11 C12 RET doub 303 e n 
C11 H11 RET sing 304 n n 
C12 C13 RET sing 305 n n 
C12 H12 RET sing 306 n n 
C13 C14 RET doub 307 e n 
C13 C20 RET sing 308 n n 
C14 C15 RET sing 309 n n 
C14 H14 RET sing 310 n n 
C15 O1 RET doub 311 n n 
C15 H15 RET sing 312 n n 
C16 H161 RET sing 313 n n 
C16 H162 RET sing 314 n n 
C16 H163 RET sing 315 n n 
C17 H171 RET sing 316 n n 
C17 H172 RET sing 317 n n 
C17 H173 RET sing 318 n n 
C18 H181 RET sing 319 n n 
C18 H182 RET sing 320 n n 
C18 H183 RET sing 321 n n 
C19 H191 RET sing 322 n n 
C19 H192 RET sing 323 n n 
C19 H193 RET sing 324 n n 
C20 H201 RET sing 325 n n 
C20 H202 RET sing 326 n n 
C20 H203 RET sing 327 n n 
#
_atom_sites.entry_id                     6MLB 
_atom_sites.fract_transf_matrix[1][1]    0.027415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002853 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015802 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008536 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL B 1 201 9 GOL GOL . 
F 3 ACT C 1 201 4 ACT ACT . 
G 3 ACT C 1 202 10 ACT ACT . 
H 2 GOL C 1 203 2 GOL GOL . 
I 4 RET C 1 204 1 RET RET . 
J 3 ACT D 1 201 2 ACT ACT . 
K 3 ACT D 1 202 3 ACT ACT . 
L 3 ACT D 1 203 8 ACT ACT . 
M 2 GOL D 1 204 4 GOL GOL . 
N 2 GOL D 1 205 6 GOL GOL . 
O 4 RET D 1 206 2 RET RET . 
P 5 HOH A 1 201 96 HOH HOH . 
P 5 HOH A 2 202 72 HOH HOH . 
P 5 HOH A 3 203 87 HOH HOH . 
P 5 HOH A 4 204 197 HOH HOH . 
P 5 HOH A 5 205 174 HOH HOH . 
P 5 HOH A 6 206 199 HOH HOH . 
P 5 HOH A 7 207 92 HOH HOH . 
P 5 HOH A 8 208 5 HOH HOH . 
P 5 HOH A 9 209 28 HOH HOH . 
P 5 HOH A 10 210 188 HOH HOH . 
P 5 HOH A 11 211 83 HOH HOH . 
P 5 HOH A 12 212 172 HOH HOH . 
P 5 HOH A 13 213 13 HOH HOH . 
P 5 HOH A 14 214 86 HOH HOH . 
P 5 HOH A 15 215 32 HOH HOH . 
P 5 HOH A 16 216 26 HOH HOH . 
P 5 HOH A 17 217 9 HOH HOH . 
P 5 HOH A 18 218 148 HOH HOH . 
P 5 HOH A 19 219 41 HOH HOH . 
P 5 HOH A 20 220 47 HOH HOH . 
P 5 HOH A 21 221 52 HOH HOH . 
P 5 HOH A 22 222 49 HOH HOH . 
P 5 HOH A 23 223 79 HOH HOH . 
P 5 HOH A 24 224 63 HOH HOH . 
P 5 HOH A 25 225 51 HOH HOH . 
P 5 HOH A 26 226 73 HOH HOH . 
P 5 HOH A 27 227 53 HOH HOH . 
P 5 HOH A 28 228 94 HOH HOH . 
P 5 HOH A 29 229 99 HOH HOH . 
P 5 HOH A 30 230 68 HOH HOH . 
P 5 HOH A 31 231 85 HOH HOH . 
P 5 HOH A 32 232 98 HOH HOH . 
P 5 HOH A 33 233 196 HOH HOH . 
P 5 HOH A 34 234 54 HOH HOH . 
Q 5 HOH B 1 301 203 HOH HOH . 
Q 5 HOH B 2 302 81 HOH HOH . 
Q 5 HOH B 3 303 126 HOH HOH . 
Q 5 HOH B 4 304 12 HOH HOH . 
Q 5 HOH B 5 305 129 HOH HOH . 
Q 5 HOH B 6 306 7 HOH HOH . 
Q 5 HOH B 7 307 34 HOH HOH . 
Q 5 HOH B 8 308 131 HOH HOH . 
Q 5 HOH B 9 309 30 HOH HOH . 
Q 5 HOH B 10 310 62 HOH HOH . 
Q 5 HOH B 11 311 21 HOH HOH . 
Q 5 HOH B 12 312 111 HOH HOH . 
Q 5 HOH B 13 313 100 HOH HOH . 
Q 5 HOH B 14 314 36 HOH HOH . 
Q 5 HOH B 15 315 113 HOH HOH . 
Q 5 HOH B 16 316 8 HOH HOH . 
Q 5 HOH B 17 317 138 HOH HOH . 
Q 5 HOH B 18 318 180 HOH HOH . 
Q 5 HOH B 19 319 184 HOH HOH . 
Q 5 HOH B 20 320 137 HOH HOH . 
Q 5 HOH B 21 321 167 HOH HOH . 
Q 5 HOH B 22 322 185 HOH HOH . 
Q 5 HOH B 23 323 178 HOH HOH . 
Q 5 HOH B 24 324 112 HOH HOH . 
Q 5 HOH B 25 325 159 HOH HOH . 
Q 5 HOH B 26 326 82 HOH HOH . 
Q 5 HOH B 27 327 158 HOH HOH . 
Q 5 HOH B 28 328 101 HOH HOH . 
Q 5 HOH B 29 329 120 HOH HOH . 
Q 5 HOH B 30 330 67 HOH HOH . 
Q 5 HOH B 31 331 74 HOH HOH . 
Q 5 HOH B 32 332 191 HOH HOH . 
R 5 HOH C 1 301 84 HOH HOH . 
R 5 HOH C 2 302 25 HOH HOH . 
R 5 HOH C 3 303 153 HOH HOH . 
R 5 HOH C 4 304 145 HOH HOH . 
R 5 HOH C 5 305 141 HOH HOH . 
R 5 HOH C 6 306 15 HOH HOH . 
R 5 HOH C 7 307 11 HOH HOH . 
R 5 HOH C 8 308 27 HOH HOH . 
R 5 HOH C 9 309 91 HOH HOH . 
R 5 HOH C 10 310 18 HOH HOH . 
R 5 HOH C 11 311 146 HOH HOH . 
R 5 HOH C 12 312 4 HOH HOH . 
R 5 HOH C 13 313 57 HOH HOH . 
R 5 HOH C 14 314 37 HOH HOH . 
R 5 HOH C 15 315 90 HOH HOH . 
R 5 HOH C 16 316 147 HOH HOH . 
R 5 HOH C 17 317 89 HOH HOH . 
R 5 HOH C 18 318 152 HOH HOH . 
R 5 HOH C 19 319 88 HOH HOH . 
R 5 HOH C 20 320 50 HOH HOH . 
R 5 HOH C 21 321 76 HOH HOH . 
R 5 HOH C 22 322 149 HOH HOH . 
R 5 HOH C 23 323 143 HOH HOH . 
R 5 HOH C 24 324 183 HOH HOH . 
R 5 HOH C 25 325 45 HOH HOH . 
S 5 HOH D 1 301 140 HOH HOH . 
S 5 HOH D 2 302 168 HOH HOH . 
S 5 HOH D 3 303 105 HOH HOH . 
S 5 HOH D 4 304 35 HOH HOH . 
S 5 HOH D 5 305 65 HOH HOH . 
S 5 HOH D 6 306 166 HOH HOH . 
S 5 HOH D 7 307 132 HOH HOH . 
S 5 HOH D 8 308 125 HOH HOH . 
S 5 HOH D 9 309 114 HOH HOH . 
S 5 HOH D 10 310 17 HOH HOH . 
S 5 HOH D 11 311 165 HOH HOH . 
S 5 HOH D 12 312 22 HOH HOH . 
S 5 HOH D 13 313 195 HOH HOH . 
S 5 HOH D 14 314 6 HOH HOH . 
S 5 HOH D 15 315 134 HOH HOH . 
S 5 HOH D 16 316 19 HOH HOH . 
S 5 HOH D 17 317 128 HOH HOH . 
S 5 HOH D 18 318 163 HOH HOH . 
S 5 HOH D 19 319 14 HOH HOH . 
S 5 HOH D 20 320 1 HOH HOH . 
S 5 HOH D 21 321 10 HOH HOH . 
S 5 HOH D 22 322 189 HOH HOH . 
S 5 HOH D 23 323 3 HOH HOH . 
S 5 HOH D 24 324 192 HOH HOH . 
S 5 HOH D 25 325 75 HOH HOH . 
S 5 HOH D 26 326 29 HOH HOH . 
S 5 HOH D 27 327 109 HOH HOH . 
S 5 HOH D 28 328 108 HOH HOH . 
S 5 HOH D 29 329 156 HOH HOH . 
S 5 HOH D 30 330 155 HOH HOH . 
S 5 HOH D 31 331 154 HOH HOH . 
S 5 HOH D 32 332 157 HOH HOH . 
S 5 HOH D 33 333 110 HOH HOH . 
S 5 HOH D 34 334 43 HOH HOH . 
S 5 HOH D 35 335 44 HOH HOH . 
S 5 HOH D 36 336 115 HOH HOH . 
S 5 HOH D 37 337 136 HOH HOH . 
S 5 HOH D 38 338 135 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . I 4 -3.059 12.362 39.786 1 69.45 ? C1 RET 204 C 1 
HETATM 2 C C2 RET . . . I 4 -3.831 13.5 40.468 1 65.97 ? C2 RET 204 C 1 
HETATM 3 C C3 RET . . . I 4 -4.92 14.139 39.615 1 72.34 ? C3 RET 204 C 1 
HETATM 4 C C4 RET . . . I 4 -5.876 13.125 39.002 1 75 ? C4 RET 204 C 1 
HETATM 5 C C5 RET . . . I 4 -5.333 11.723 38.936 1 69.55 ? C5 RET 204 C 1 
HETATM 6 C C6 RET . . . I 4 -4.021 11.454 39.02 1 69.98 ? C6 RET 204 C 1 
HETATM 7 C C7 RET . . . I 4 -3.539 10.09 38.942 1 74.15 ? C7 RET 204 C 1 
HETATM 8 C C8 RET . . . I 4 -2.683 9.512 38.086 1 70.66 ? C8 RET 204 C 1 
HETATM 9 C C9 RET . . . I 4 -2.305 8.113 38.147 1 58.99 ? C9 RET 204 C 1 
HETATM 10 C C10 RET . . . I 4 -1.007 7.769 38.338 1 63.1 ? C10 RET 204 C 1 
HETATM 11 C C11 RET . . . I 4 -0.478 6.441 38.472 1 56.52 ? C11 RET 204 C 1 
HETATM 12 C C12 RET . . . I 4 0.667 5.956 37.972 1 49.81 ? C12 RET 204 C 1 
HETATM 13 C C13 RET . . . I 4 1.136 4.597 38.17 1 50.68 ? C13 RET 204 C 1 
HETATM 14 C C14 RET . . . I 4 2.324 4.192 37.659 1 37 ? C14 RET 204 C 1 
HETATM 15 C C15 RET . . . I 4 2.917 2.885 37.792 1 40.99 ? C15 RET 204 C 1 
HETATM 16 C C16 RET . . . I 4 -2.312 11.565 40.862 1 66.9 ? C16 RET 204 C 1 
HETATM 17 C C17 RET . . . I 4 -2.03 12.969 38.826 1 75.23 ? C17 RET 204 C 1 
HETATM 18 C C18 RET . . . I 4 -6.392 10.692 38.651 1 71.01 ? C18 RET 204 C 1 
HETATM 19 C C19 RET . . . I 4 -3.4 7.091 38.021 1 64.45 ? C19 RET 204 C 1 
HETATM 20 C C20 RET . . . I 4 0.257 3.677 38.969 1 49.72 ? C20 RET 204 C 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#