data_6MLM
#
_model_server_result.job_id            BlsuhiyqqP2kjSQ333htUQ 
_model_server_result.datetime_utc      '2024-12-23 23:21:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6mlm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":801}' 
#
_entry.id    6MLM 
#
_exptl.entry_id    6MLM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6MLM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6MLM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 30 1_555 B SG CYS 140 C CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf2 A SG CYS 60 A CYS 68 1_555 A SG CYS 278 A CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
disulf ? disulf3 A SG CYS 72 A CYS 80 1_555 A SG CYS 84 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 105 A CYS 113 1_555 A SG CYS 147 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 A SG CYS 282 A CYS 297 1_555 A SG CYS 306 A CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf6 B SG CYS 147 C CYS 144 1_555 B SG CYS 151 C CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf7 C SG CYS 21 E CYS 22 1_555 C SG CYS 95 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf8 D SG CYS 23 I CYS 23 1_555 D SG CYS 88 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 E SG CYS 22 B CYS 30 1_555 F SG CYS 140 D CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf10 E SG CYS 60 B CYS 68 1_555 E SG CYS 278 B CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
disulf ? disulf11 E SG CYS 72 B CYS 80 1_555 E SG CYS 84 B CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 E SG CYS 105 B CYS 113 1_555 E SG CYS 147 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf13 E SG CYS 282 B CYS 297 1_555 E SG CYS 306 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf14 F SG CYS 147 D CYS 144 1_555 F SG CYS 151 D CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf15 G SG CYS 21 F CYS 22 1_555 G SG CYS 95 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf16 H SG CYS 23 G CYS 23 1_555 H SG CYS 88 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf17 I SG CYS 22 H CYS 30 1_555 J SG CYS 140 J CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf18 I SG CYS 60 H CYS 68 1_555 I SG CYS 278 H CYS 293 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
disulf ? disulf19 I SG CYS 72 H CYS 80 1_555 I SG CYS 84 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf20 I SG CYS 105 H CYS 113 1_555 I SG CYS 147 H CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf21 I SG CYS 282 H CYS 297 1_555 I SG CYS 306 H CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf22 J SG CYS 147 J CYS 144 1_555 J SG CYS 151 J CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf23 K SG CYS 21 K CYS 22 1_555 K SG CYS 95 K CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf24 L SG CYS 23 L CYS 23 1_555 L SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 46 A ASN 54 1_555 M C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 A ND2 ASN 241 A ASN 256 1_555 N C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale3 B ND2 ASN 85 C ASN 82 1_555 O C1 NAG . C NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale4 E ND2 ASN 46 B ASN 54 1_555 P C1 NAG . B NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale5 E ND2 ASN 241 B ASN 256 1_555 Q C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale6 F ND2 ASN 85 D ASN 82 1_555 R C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale7 I ND2 ASN 46 H ASN 54 1_555 S C1 NAG . H NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale8 I ND2 ASN 241 H ASN 256 1_555 T C1 NAG . H NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? 
covale ? covale9 J ND2 ASN 85 J ASN 82 1_555 U C1 NAG . J NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6MLM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 5 NAG A 1 801 801 NAG NAG . 
N 5 NAG A 1 802 803 NAG NAG . 
O 5 NAG C 1 301 802 NAG NAG . 
P 5 NAG B 1 801 801 NAG NAG . 
Q 5 NAG B 1 802 803 NAG NAG . 
R 5 NAG D 1 301 802 NAG NAG . 
S 5 NAG H 1 801 801 NAG NAG . 
T 5 NAG H 1 802 803 NAG NAG . 
U 5 NAG J 1 301 802 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . S 5 155.661 132.948 191.623 1 198.45 ? C1 NAG 801 H 1 
HETATM 2 C C2 NAG . . . S 5 156.878 132.458 192.411 1 206.04 ? C2 NAG 801 H 1 
HETATM 3 C C3 NAG . . . S 5 157.994 132.505 191.422 1 205.13 ? C3 NAG 801 H 1 
HETATM 4 C C4 NAG . . . S 5 157.717 131.659 190.121 1 205.08 ? C4 NAG 801 H 1 
HETATM 5 C C5 NAG . . . S 5 156.456 132.248 189.413 1 201.24 ? C5 NAG 801 H 1 
HETATM 6 C C6 NAG . . . S 5 155.92 131.476 188.234 1 201.03 ? C6 NAG 801 H 1 
HETATM 7 C C7 NAG . . . S 5 157.467 132.958 194.766 1 212.39 ? C7 NAG 801 H 1 
HETATM 8 C C8 NAG . . . S 5 157.393 131.498 195.077 1 214.31 ? C8 NAG 801 H 1 
HETATM 9 N N2 NAG . . . S 5 157.217 133.362 193.513 1 208.49 ? N2 NAG 801 H 1 
HETATM 10 O O3 NAG . . . S 5 159.217 132.075 192.068 1 207.7 ? O3 NAG 801 H 1 
HETATM 11 O O4 NAG . . . S 5 158.815 131.802 189.254 1 219.1 ? O4 NAG 801 H 1 
HETATM 12 O O5 NAG . . . S 5 155.449 132.177 190.345 1 193.94 ? O5 NAG 801 H 1 
HETATM 13 O O6 NAG . . . S 5 156.863 131.328 187.186 1 198.83 ? O6 NAG 801 H 1 
HETATM 14 O O7 NAG . . . S 5 157.753 133.784 195.636 1 213.68 ? O7 NAG 801 H 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           207 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#